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Author SHA1 Message Date
Ben J Woodcroft a522517cdb
gnu: diamond: Update to 0.9.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.9.
 2017-07-04 19:59:01 +10:00
Ben Woodcroft 18dea67dc3
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
 2017-07-04 19:58:42 +10:00
Mark H Weaver c24ea83cd7
gnu: linux-libre: Update to 4.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.11-i686.conf,
gnu/packages/aux-files/linux-libre/4.11-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
 2017-07-04 04:24:58 -04:00
Efraim Flashner fdaf6cd345
gnu: qt: Update to 5.9.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras)
(qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors)
(qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel)
(qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2)
(qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d)
(qtcharts, qtdatavis3d, qtwebkit): Update to 5.9.1.
(qtwebkit)[source]: Change to official qt location.
 2017-07-04 08:55:00 +03:00
Marius Bakke a8a964db83
gnu: python-pylint: Update to 1.7.2. 
* gnu/packages/python.scm (python-pylint): Update to 1.7.2.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2017-07-04 02:52:26 +02:00
Marius Bakke de2f56cf96
gnu: python-astroid: Update to 1.5.3. 
* gnu/packages/python.scm (python-astroid): Update to 1.5.3.
[properties]: Declare python2 variant.
(python2-astroid)[propagated-inputs]: Add PYTHON2-BACKPORTS-FUNCTOOLS-LRU-CACHE,
PYTHON2-ENUM34 and PYTHON2-SINGLEDISPATCH.
 2017-07-04 02:52:26 +02:00
Marius Bakke 96bbc41f8b
gnu: python-pyopenssl: Update to 17.1.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0.
[source]: Remove patch.
[native-inputs]: Add PYTHON-PRETEND.
[arguments]<#:phases>: Disable the network test here instead of via a patch.
Also disable one new test.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-04 02:52:26 +02:00
Marius Bakke 89fc5b82d4
gnu: python-cryptography: Update to 1.9. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.9.
(python-cryptography): Update to 1.9.
[propagated-inputs]: Remove PYTHON-PACKAGING.
 2017-07-04 02:52:25 +02:00
Marius Bakke 029933cf79
gnu: python-cffi: Update to 1.10.0. 
* gnu/packages/python.scm (python-cffi): Update to 1.10.0.
[arguments]<#:phases>: Patch distutils.ccompiler call to use "gcc". Patch
another hard-coded cc invocation. Adjust `py.test` invocation per README.
 2017-07-04 02:52:25 +02:00
Marius Bakke 295f32f34b
gnu: python-cffi: Really enable tests. 
* gnu/packages/python.scm (python-cffi, python2-cffi)[arguments]: Replace
'check' phase with custom expression. Change to 'modify-phases' syntax.
 2017-07-04 02:52:25 +02:00
Marius Bakke 92d7e87c59
gnu: re2: Update to 2017-07-01. 
* gnu/packages/regex.scm (re2): Update to 2017-07-01.
 2017-07-04 02:52:25 +02:00
Marius Bakke 6db571cbf0
install: Drop redundant package after c0f5eee4b2. 
* gnu/system/install.scm (installation-os): Remove SHADOW.
 2017-07-04 02:52:25 +02:00
Tobias Geerinckx-Rice f88eaccf19
gnu: ibus: Update to 1.5.16. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.16.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice e97b75d997
gnu: cdogs-sdl: Update to 0.6.5. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.5.
[inputs]: Add mesa.
[home-page]: Use HTTPS.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice e9e3a69d36
gnu: nnn: Update to 1.2. 
* gnu/packages/admin.scm (nnn): Update to 1.2.
 2017-07-04 00:51:52 +02:00
Kei Kebreau 910f1709a8
gnu: gcr: Correct patch. 
* gnu/packages/patches/gcr-disable-failing-tests.patch: Correct
erroneously committed file.

This is a follow-up to commit 85c774808f.
 2017-07-03 18:42:50 -04:00
Ludovic Courtès d5ec5ed719
packages: Mark 'replacement' as an "innate" field. 
Suggested by Mark H Weaver
at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00355.html>.

* guix/packages.scm (<package>)[replacement]: Mark as "innate".
* gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24)
(glibc-2.23, glibc-2.22, glibc-2.21, glibc-locales): Remove
'replacement' field, which was set to #f.
* gnu/packages/commencement.scm (perl-boot0): Likewise.
* gnu/packages/fontutils.scm (graphite2/fixed): Likewise.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Likewise.
* gnu/packages/gnupg.scm (libgcrypt-1.7.8): Likewise.
* gnu/packages/guile.scm (guile-2.0/fixed, guile-2.2): Likewise.
* gnu/packages/icu4c.scm (icu4c/fixed): Likewise.
* gnu/packages/image.scm (libpng-apng): Likewise.
* gnu/packages/make-bootstrap.scm (%guile-static): Likewise.
* gnu/packages/pcre.scm (pcre/fixed): Likewise.
* gnu/packages/perl.scm (perl/fixed): Likewise.
* gnu/packages/ruby.scm (ruby-2.3, ruby-2.2, ruby-2.1)
(ruby-1.8): Likewise.
* gnu/packages/tls.scm (gnutls-3.5.13, gnutls/guile-2.2): Likewise.
* gnu/packages/xml.scm (expat-2.2.1): Likewise.
 2017-07-03 23:51:22 +02:00
Nicolas Goaziou f6444059dd
gnu: wine: Add stable release. 
* gnu/packages/wine.scm (wine): Refer to stable release instead of development
  one.
(wine-next): New variable.
 2017-07-03 18:10:11 +02:00
Oleg Pykhalov aadd75acd6
gnu: Add emacs-emamux. 
* gnu/packages/emacs.scm (emacs-emamux): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-07-03 22:34:40 +08:00
Danny Milosavljevic 08c1f2d21c
build: Add (gnu build file-systems) import. 
* gnu/build/vm.scm: Add (gnu build file-systems) import.
 2017-07-03 16:33:46 +02:00
Kei Kebreau 85c774808f
gnu: gcr: Enable working tests. 
* gnu/packages/patches/gcr-disable-failing-tests.patch,
gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
* gnu/packages/gnome.scm (gcr)[source]: Use patches.
[arguments]: Enable tests.
 2017-07-03 09:52:59 -04:00
Danny Milosavljevic 4f80be730e
build: Clarify error message when make-iso9660-image fails. 
* gnu/build/vm.scm (make-iso9660-image): Clarify error message.
 2017-07-03 15:13:09 +02:00
Danny Milosavljevic 1feb3076cb
build: Allow specifying volume-uuid with make-iso9660-image. 
* gnu/build/file-systems.scm (iso9660-uuid->string): Export.
* gnu/build/vm.scm (make-iso9660-image): Add volume-uuid.
 2017-07-03 15:07:25 +02:00
宋文武 1ec0c1f30e
gnu: xfce: Propagate search paths of 'xfce4-panel'. 
* gnu/packages/xfce.scm (xfce)[native-search-paths]: New field.
 2017-07-03 19:27:56 +08:00
Roel Janssen fd2d17cdae
gnu: Add emacs-sparql-mode. 
* gnu/packages/emacs.scm (emacs-sparql-mode): New variable.
 2017-07-03 13:02:07 +02:00
Danny Milosavljevic be1033a334
build: Add iso9660 system image generator. 
* build-aux/hydra/gnu-system.scm (qemu-jobs): Add 'iso9660-image .
* gnu/build/vm.scm (make-iso9660-image): New variable.  Export it.
* gnu/system/vm.scm (iso9660-image): New variable.  Use make-iso9660-image.
(system-disk-image): Use iso9660-image.
 2017-07-03 10:07:59 +02:00
Ludovic Courtès 1b0f266e40
gnu: Switch guile-cairo and dependents to Guile 2.2 again. 
Fixes <https://bugs.gnu.org/27551>.
Reported by Leo Famulari <leo@famulari.name>.

This reinstates the following commits:

  e3ddb1e83 * gnu: guile-cairo: Switch to Guile 2.2.
  ae5c6ef39 * gnu: guile-gnome: Update to 2.16.5.
  0fd8013fc * gnu: guile-rsvg: Update to commit 05c6a2fd.
  66b9183c4 * gnu: guile-lib: Switch to Guile 2.2.

and adds the following changes:

* gnu/bootloader/grub.scm (svg->png): Add 'package->derivation' call for
GUILE-2.2.  Pass #:guile-for-build to 'gexp->derivation'.
* gnu/build/svg.scm (svg->png): Add 'em' and 'ex' to the 'let-values'
form to account for all the values returned by
'rsvg-handle-get-dimensions', which Guile 2.2 does not truncate.
 2017-07-02 22:52:30 +02:00
Theodoros Foradis 61f81618a8
gnu: Add toxic. 
* gnu/packages/messaging.scm (toxic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-02 22:52:27 +02:00
Danny Milosavljevic ed3485fa9c
linux-initrd: Add isofs if necessary. 
* gnu/system/linux-initrd.scm (base-initrd): Add isofs.
 2017-07-02 20:27:26 +02:00
Alex Kost 3fb8e281b7
gnu: emacs-guix: Update to 0.3.2. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.2.
[arguments]: Add '--with-guix-site-ccache-dir' configure flag, as Guix
installs its .go files separately nowadays.
 2017-07-02 20:45:18 +03:00
Danny Milosavljevic 9c0a05b31e
file-systems: iso9660-uuid->string: Use "-" as separator in the result. 
* gnu/build/file-systems.scm (iso9660-uuid->string): Use "-" as separator
in the result.
 2017-07-02 19:27:25 +02:00
Leo Famulari f277dea2e2
gnu: beets: Update to 1.4.5. 
* gnu/packages/music.scm (beets): Update to 1.4.5.
 2017-07-02 11:35:04 -04:00
Ludovic Courtès 50cb948f1c
install: Re-add /bin/sh. 
Reported by Divan Santana <divan@santanas.co.za>.
/bin/sh had disappeared in commit
387e175492.

* gnu/system/install.scm (%installation-services): Add
'special-files-service-type' instance.
 2017-07-02 16:44:59 +02:00
Leo Famulari e00a59097e
gnu: python-vobject: Update to 0.9.5. 
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.5.
 2017-07-02 09:17:20 -04:00
Leo Famulari 477aa33400
gnu: vdirsyncer: Update to 0.16.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.0.
[license]: Change to bsd-3.
 2017-07-02 09:17:16 -04:00
Efraim Flashner bfba12695a
gnu: ovmf: Fix build on x86_64. 
This is a follow-up to 2eb95ade8f.

* gnu/packages/firmware.scm (ovmf)[arguments]: Fix the syntax used when
following the x86_64 fork of the arguments.
 2017-07-02 13:13:35 +03:00
Efraim Flashner dd78efe39a
gnu: font-google-noto: Update to 20170403. 
* gnu/packages/fonts.scm (font-google-noto): Update to 20170403.
[source]: Update source uri.
 2017-07-01 23:45:20 +03:00
Efraim Flashner fc19cee18c
gnu: font-gnu-unifont: Update to 10.0.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.03.
[properties]: Add 'upstream-name' to ease updates.
 2017-07-01 23:45:19 +03:00
Leo Famulari 5ace0919c2
Revert "gnu: guile-lib: Switch to Guile 2.2." 
This reverts commit 66b9183c4f.
 2017-07-01 16:08:47 -04:00
Leo Famulari 6b820ef15d
Revert "gnu: guile-rsvg: Update to commit 05c6a2fd." 
This reverts commit 0fd8013fca.
 2017-07-01 16:08:47 -04:00
Leo Famulari 5e1f9b3042
Revert "gnu: guile-gnome: Update to 2.16.5." 
This reverts commit ae5c6ef393.
 2017-07-01 16:08:47 -04:00
Leo Famulari f3bb868a71
Revert "gnu: guile-cairo: Switch to Guile 2.2." 
This commit caused the build of grub-image.png to fail, prevent the
build of grub.cfg and reconfiguring of GuixSD:

<https://bugs.gnu.org/27551>

This reverts commit e3ddb1e832.
 2017-07-01 16:08:47 -04:00
Leo Famulari dc03f32dea
gnu: guile-git: Update source URL. 
* gnu/packages/guile.scm (guile-git)[source]: Update URL.
 2017-07-01 15:25:21 -04:00
Ben Woodcroft ba773f65f0
gnu: cd-hit: Update to 4.6.8. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.8.
 2017-07-01 10:49:37 +10:00
Ben Woodcroft fd99d95b3f
gnu: bwa: Update to 0.7.15. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.15.
 2017-07-01 09:48:20 +10:00
Tobias Geerinckx-Rice 97d451540c
gnu: btrfs-progs: Update to 4.11.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.1.
 2017-07-01 01:23:41 +02:00
Tobias Geerinckx-Rice 0c7ce625b7
gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377]. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.9.
 2017-07-01 00:20:53 +02:00
Feng Shu f4ade9b6c8
gnu: Add emacs-exwm-x. 
* gnu/packages/emacs.scm (emacs-exwm-x): New variable.
 2017-06-30 23:30:31 +02:00
Feng Shu 58addd2b20
gnu: Add emacs-switch-window. 
* gnu/packages/emacs.scm (emacs-switch-window): New variable.
 2017-06-30 23:30:31 +02:00
Ludovic Courtès e3ddb1e832
gnu: guile-cairo: Switch to Guile 2.2. 
This patch adjusts dependent packages accordingly.

* gnu/packages/gtk.scm (guile-cairo)[inputs]: Switch to GUILE-2.2 and
GUILE-LIB.
(guile-rsvg)[inputs]: Likewise.
(guile-present)[inputs]: Likewise.
(guile-gnome)[inputs]: Likewise.
* gnu/packages/plotutils.scm (guile-charting)[inputs]: Switch go
GUILE-2.2.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès ae5c6ef393
gnu: guile-gnome: Update to 2.16.5. 
* gnu/packages/gtk.scm (guile-gnome): Update to 2.16.5.
[arguments] <pre-configure>: Use @GUILE_EFFECTIVE_VERSION@ instead of
"2.0".
[properties]: New field.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 0fd8013fca
gnu: guile-rsvg: Update to commit 05c6a2fd. 
* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd.
[source](url): Change to gitlab.com.
(snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0".
* gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use
"$GUILE_EFFECTIVE_VERSION" instead of "2.0".
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 66b9183c4f
gnu: guile-lib: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-lib)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
(guile2.0-lib): New variable.
(guile2.2-lib): Mark as deprecated.
* gnu/packages/guile.scm (guile-ics): Use GUILE2.0-LIB.
* gnu/packages/gtk.scm (guile-cairo, guile-rsvg)
(guile-present, guile-gnome): Likewise.
* gnu/packages/skribilo.scm (skribilo): Likewise.
 2017-06-30 23:20:33 +02:00
Ludovic Courtès 30f17d73d6
gnu: guile-lib: Update to 0.2.5.1. 
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.1.
 2017-06-30 23:20:33 +02:00
Leo Famulari f48a9d4a46
gnu: npth: Update to 1.5. 
* gnu/packages/gnupg.scm (npth): Update to 1.5.
 2017-06-30 16:54:05 -04:00
Leo Famulari 9570b01631
gnu: libreoffice: Update to 5.3.2.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.2.2.
 2017-06-30 16:11:45 -04:00
Ludovic Courtès 798b7678a0
gnu: hwloc: Add "lib" and "debug" outputs. 
* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
 2017-06-30 18:44:41 +02:00
Ludovic Courtès 7eb9f31cd9
gnu: hwloc: Use /var as the localstatedir. 
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
 2017-06-30 18:44:41 +02:00
Gregor Giesen 2973ebf504
gnu: Add mkvtoolnix. 
* gnu/packages/video.scm (mkvtoolnix): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 15f1d02aad
gnu: Add libmatroska. 
* gnu/packages/video.scm (libmatroska): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 5bc2d5798d
gnu: Add libebml. 
* gnu/packages/xml.scm (libebml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen bf7c369940
gnu: Add nlohmann-json-cpp. 
* gnu/packages/serialization.scm (nlohmann-json-cpp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:40 -04:00
Leo Famulari ecb232bdfc
gnu: isc-dhcp: Update bundled bind to 9.9.10-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P2.
 2017-06-30 11:59:31 -04:00
Leo Famulari faa1369e3c
gnu: bind: Update to 9.11.1-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P2.
 2017-06-30 11:59:28 -04:00
Arun Isaac 0ac042324a
gnu: Add jo. 
* gnu/packages/web.scm (jo): New variable.
 2017-06-30 20:02:13 +05:30
Oleg Pykhalov c97979d629
gnu: Add emacs-org-edit-latex. 
* gnu/packages/emacs.scm (emacs-org-edit-latex): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-06-30 19:09:32 +05:30
Ricardo Wurmus 3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript. 
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
 2017-06-30 13:57:42 +02:00
Ricardo Wurmus 612a387fe7
gnu: gnuplot: Use texlive-tiny. 
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a023ec6e4c
gnu: giac-xcas: Use texlive-tiny. 
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a8b0948b7c
gnu: pari-gp: Use texlive-tiny. 
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus 84889519bb
gnu: po4a: Use texlive-tiny. 
* gnu/packages/gettext.scm (po4a)[native-inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ludovic Courtès 87941d1df4
system: Use "@" to refer to the 'shadow' package. 
Reported by Mark H Weaver
at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00349.html>.

* gnu/system.scm (%base-packages): Use '@' for shadow.  This fixes an
error on Guile 2.0 where 'shadow' alone resolves to the (gnu system
shadow) module.
 2017-06-30 11:27:30 +02:00
Mark H Weaver 588b22575d
gnu: linux-libre: Update to 4.11.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.8.
(%linux-libre-hash): Update hash.
 2017-06-30 00:13:36 -04:00
Mark H Weaver 426187d278
gnu: linux-libre@4.9: Update to 4.9.35. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.35.
 2017-06-30 00:12:55 -04:00
Mark H Weaver 5d7f9c156e
gnu: linux-libre@4.4: Update to 4.4.75. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.75.
 2017-06-30 00:12:16 -04:00
Mark H Weaver 5a1b5dccf0
gnu: linux-libre@4.1: Update to 4.1.42 [mitigates CVE-2017-1000364]. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.42.
 2017-06-30 00:11:10 -04:00
Ludovic Courtès a2278922fe
vm: Use 'fold2' from (guix combinators). 
* gnu/build/vm.scm: Use (guix combinators).
(fold2): Remove.
 2017-06-30 00:16:51 +02:00
Ludovic Courtès a8ac4f081a
vm: Estimate the disk size by default. 
* gnu/build/vm.scm (estimated-partition-size): New procedure.
* gnu/system/vm.scm (expression->derivation-in-linux-vm):
Change #:disk-image-size default to 'guess.
[builder]: When DISK-IMAGE-SIZE is 'guess, use
'estimated-partition-size' and compute and estimate of the image size.
(qemu-image): Likewise.
* guix/build/store-copy.scm (file-size, closure-size): New procedures.
* guix/scripts/system.scm (%default-options): Change 'image-size' to
'guess.
* doc/guix.texi (Building the Installation Image): Remove '--image-size'
flag from example.
(Invoking guix system): Document the image size estimate.
 2017-06-30 00:16:50 +02:00
Ludovic Courtès a2cf57e79e
vm: Display the disk and partition sizes. 
* gnu/build/vm.scm (load-in-linux-vm): Add 'format' call when
MAKE-DISK-IMAGE? is true.
(initialize-partition-table): Show the size of the partitions being
created.
 2017-06-30 00:16:50 +02:00
Ludovic Courtès 6efb98ed3c
vm: Fix 'load-in-linux-vm' docstring. 
* gnu/build/vm.scm (load-in-linux-vm): Change default value of
  #:disk-image-size.  Update docstring to note that DISK-IMAGE-SIZE is
  in bytes.
 2017-06-30 00:16:50 +02:00
Leo Famulari 95bbaa02aa
gnu: poppler: Fix CVE-2017-{9775,9776}. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler-0.56.0): New variable.
(poppler-qt4, poppler-qt5): Use 'package/inherit'.
 2017-06-29 16:40:10 -04:00
Efraim Flashner 1b6d3b7a23
gnu: thermald: Add file-name for source. 
* gnu/packages/admin.scm (thermald)[source]: Add file-name field.
 2017-06-29 23:09:24 +03:00
Efraim Flashner 86ee76254b
gnu: thermald: Only build on i686 and x86_64. 
* gnu/packages/admin.scm (thermald)[supported-systems]: New field.
 2017-06-29 23:08:17 +03:00
Efraim Flashner ef2c7fb5da
gnu: libgcrypt: Add mitigation for CVE-2017-7526. 
* gnu/packages/gnupg.scm (libgcrypt)[replacment]: New field.
(libgcrypt-1.7.8): New variable.
(libgcrypt-1.5)[replacment]: New field.
 2017-06-29 21:04:33 +03:00
Jan Nieuwenhuizen 604e494dc0
gnu: mes: Update to 0.8. 
* gnu/packages/mes.scm (mes): Update to 0.8.
 2017-06-29 18:11:34 +02:00
Jan Nieuwenhuizen 9ae3fcb9e8
gnu: Add mescc-tools. 
* gnu/packages/mes.scm (mescc-tools): New variable.
 2017-06-29 18:09:42 +02:00
Ludovic Courtès c0f5eee4b2
system: Add 'shadow' to %BASE-PACKAGES. 
Suggested by Göktuğ Kayaalp <self@gkayaalp.com>.

* gnu/system.scm (%base-packages): Add SHADOW.
 2017-06-29 16:28:28 +02:00
Ricardo Wurmus b8d3a000ef
gnu: libxfce4ui: Do not propagate gtk+-2. 
Propagation of both gtk+ and gtk+-2 causes a conflict to be detected,
preventing the installation of xfce.

* gnu/packages/xfce.scm (libxfce4ui)[propagated-inputs]: Move "gtk+-2"...
[inputs]: ...to here.
(garcon)[inputs]: Add "gtk+-2".
(xfce4-appfinder)[inputs]: Add "gtk+-2".
(xfce4-power-manager)[inputs]: Add "gtk+-2".
(ristretto)[inputs]: Add "gtk+-2".
 2017-06-29 16:06:14 +02:00
Ricardo Wurmus c860d6ef23
gnu: xfce: Build union instead of propagating inputs. 
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: Move all...
[inputs]: ...here.
[arguments]: Build a union.
 2017-06-29 16:06:14 +02:00
Alex Vong d34970ee2b
gnu: clojure: Update "tools-reader-src" to 1.0.0. 
* gnu/packages/java.scm (clojure)[inputs]: Update "tools-reader-src" to
1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Dave Love a73e7dd3b0
gnu: Add procenv. 
* gnu/packages/linux.scm (procenv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Jelle Licht b786661309
gnu: ansible: Apply experimental patch to deal with wrapping of ansible script. 
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the
rationale.

* gnu/packages/patches/ansible-wrap-program-hack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (ansible)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Jelle Licht aafcfffd93
gnu: node: Update to 8.1.2. 
* gnu/packages/node.scm (node): Update to 8.1.2.
(node)[arguments]: Disabled more tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Ludovic Courtès 3ab869b63f
gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64. 
This fixes a regression introduced in
ef39a17717, which would break
python-scipy ("undefined reference to `zungqr_'").

* gnu/packages/maths.scm (lapack)[arguments]: Add
"-DCMAKE_INSTALL_LIBDIR" to #:configure-flags.
 2017-06-29 15:21:17 +02:00
Efraim Flashner 2eb95ade8f
gnu: ovmf: Only build 32-bit firmware on i686-linux. 
* gnu/packages/firmware.scm (ovmf)[arguments]: Only when the build
machine is x86_64-linux should the 64-bit firmware be built and
installed.
 2017-06-29 12:54:54 +03:00
Efraim Flashner 8363a83517
gnu: openh264: Fix building on armhf and aarch64. 
* gnu/packages/video.scm (openh264)[arguments]: Add 'CC=gcc' to
the #:make-flags.
 2017-06-29 11:44:49 +03:00
Efraim Flashner fcf4003950
gnu: r-spams: Update to 2.6-2017-03-22. 
* gnu/packages/statistics.scm (r-spams): Update to 2.6-2017-03-22.
[arguments]: Remove R-3.3 work-around and syntax fixes, add phase to
prevent tuning r-spams to the compiling hardware.
 2017-06-29 10:02:58 +03:00
Eric Bavier 691ae7fa7a
gnu: wdiff: Remove unused screen input. 
* gnu/packages/wdiff.scm (wdiff): 'inputs' -> 'native-inputs'.
[native-inputs]: Remove unused screen input.
[arguments]: Use modify-phases.
 2017-06-28 23:25:23 -05:00
Eric Bavier 57dfc9f86c
gnu: screen: Update to 4.6.0. 
* gnu/packages/screen.scm (screen): Update to 4.6.0.
[source]: Remove patch.
* gnu/packages/patches/screen-fix-info-syntax-error.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-06-28 22:59:41 -05:00
Eric Bavier 59b53c4227
gnu: moe: Update to 1.9. 
* gnu/packages/moe.scm (moe): Update to 1.9.
 2017-06-28 22:54:14 -05:00