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8360 Commits

Author SHA1 Message Date
David Thompson 85c7e8e611 Revert "gnu: util-linux: Add "static" output." 
This reverts commit df887432be.
 2016-04-14 13:24:10 -04:00
Ricardo Wurmus e6f0ca2f05 gnu: r-htmltools: Update to 0.3.5. 
* gnu/packages/web.scm (r-htmltools): Update to 0.3.5.
[propagated-inputs]: Add r-rcpp.
 2016-04-14 14:54:40 +02:00
Ricardo Wurmus e4785eb816 gnu: Add r-nnet. 
* gnu/packages/machine-learning.scm (r-nnet): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 07f911bab7 gnu: Add r-igraph. 
* gnu/packages/statistics.scm (r-igraph): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b783ff7833 gnu: Add r-nmf. 
* gnu/packages/statistics.scm (r-nmf): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 790034bd23 gnu: Add r-rngtools. 
* gnu/packages/statistics.scm (r-rngtools): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 2d0f7d80bf gnu: Add r-registry. 
* gnu/packages/statistics.scm (r-registry): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 3a6607f00b gnu: Add r-pkgmaker. 
* gnu/packages/statistics.scm (r-pkgmaker): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus dada39aaed gnu: Add r-irlba. 
* gnu/packages/statistics.scm (r-irlba): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b20abbcd74 gnu: Add r-latticeextra. 
* gnu/packages/statistics.scm (r-latticeextra): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus a73f4cd18b gnu: Add r-xtable. 
* gnu/packages/statistics.scm (r-xtable): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 97ee973daa gnu: Add r-locfit. 
* gnu/packages/statistics.scm (r-locfit): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus b1acb44573 gnu: Add r-formula. 
* gnu/packages/statistics.scm (r-formula): New variable.
 2016-04-14 14:53:31 +02:00
Ricardo Wurmus 0837dd0737 gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus 0926b8779f gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2016-04-14 14:53:30 +02:00
Ricardo Wurmus b4d6f4089f gnu: Add r-acepack. 
* gnu/packages/statistics.scm (r-acepack): New variable.
 2016-04-14 14:53:30 +02:00
Ludovic Courtès a2d0e2003f gnu: hwloc: Update to 1.11.2. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.2.  Change URLs to https.
 2016-04-14 10:20:14 +02:00
Alex Kost fc1adab148 gnu: packages: Use 'search-patches' everywhere. 
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
 2016-04-14 10:38:21 +03:00
Alex Kost 25897079a2 packages: Add 'search-patches'. 
* gnu/packages.scm (search-patches): New macro.
 2016-04-14 10:36:11 +03:00
Alex Kost 5c93de7337 gnu: Add maim. 
* gnu/packages/xdisorg.scm (maim): New variable.
 2016-04-14 10:32:56 +03:00
Alex Kost 9f1d33be33 gnu: Add slop. 
* gnu/packages/xdisorg.scm (slop): New variable.
 2016-04-14 10:32:56 +03:00
Mark H Weaver 557a2503bc gnu: linux-libre-4.4: Update to 4.4.7. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.7.
 2016-04-13 21:01:16 -04:00
Mark H Weaver f7cfd80fc6 gnu: linux-libre: Update to 4.5.1. 
* gnu/packages/linux.scm (linux-libre): Update to 4.5.1.
 2016-04-13 21:01:16 -04:00
Raymond Nicholson 58f738a1c8 gnu: pcmanfm, libfm: Update to 1.2.4. 
* gnu/packages/lxde.scm (pcmanfm): Update to 1.2.4.
* gnu/packages/lxde.scm (libfm): Update to 1.2.4.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-13 20:46:14 -04:00
Ricardo Wurmus b0cf3d0fed gnu: qsynth: Update to 0.4.1. 
* gnu/packages/audio.scm (qsynth): Update to 0.4.1.
 2016-04-13 21:34:41 +02:00
Nicolas Goaziou 57497c5753 gnu: Add giac-xcas. 
* gnu/packages/algebra.scm (giac-xcas): New variable.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2016-04-13 19:52:33 +02:00
Nicolas Goaziou 61bb355532 gnu: Add mpfi. 
* gnu/packages/multiprecision.scm (mpfi): New variable.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2016-04-13 19:52:33 +02:00
David Thompson 0de9813905 gnu: geda-gaf: Make gsch2pcb work out-of-the-box. 
* gnu/packages/engineering.scm (geda-gaf)[inputs]: Add m4 and pcb.
[arguments]: Add configure flags that point to PCB data files.
 2016-04-13 12:08:17 -04:00
Andreas Enge 57c9c349b7 gnu: Add GMP-ECM. 
* gnu/packages/algebra.scm (gmp-ecm): New variable.
 2016-04-13 13:32:05 +02:00
Kei Yamashita dfc407f348 gnu: Add gnome-sudoku. 
* gnu/packages/gnome.scm (gnome-sudoku): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-13 14:25:51 +08:00
Kei Yamashita 966dff3b81 gnu: Add qqwing. 
* gnu/packages/game-development.scm (qqwing): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-13 14:25:51 +08:00
Leo Famulari 645deac326 gnu: samba: Update to 4.3.8. 
Fixes CVE-2015-5730, CVE-2016-2110, CVE-2016-2111, CVE-2016-2112,
CVE-2016-2113, CVE-2016-2114, CVE-2016-2115, CVE-2016-2118.

* gnu/packages/samba.scm (samba): Update to 4.3.8.
 2016-04-12 19:39:12 -04:00
Roel Janssen ec8c7e4734 gnu: Add r-pracma. 
* gnu/packages/maths.scm (r-pracma): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-12 14:55:10 -04:00
Christopher Allan Webber b4c400a75c gnu: Add xscreensaver. 
* gnu/packages/xdisorg.scm (xscreensaver): New variable.
 2016-04-12 10:20:13 -05:00
alírio eyng 927e176d2a gnu: fontforge: Update to 20160404. 
* gnu/packages/fontutils.scm (fontforge): Update to 20160404.
  [source](snippet): Remove tottf.c modification.  Update date strings.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2016-04-12 09:39:40 -05:00
Leo Famulari 1e7bd1ec6e gnu: abduco: Update to 0.6. 
* gnu/packages/abduco.scm (abduco): Update to 0.6.
 2016-04-12 04:48:47 -04:00
Tobias Geerinckx-Rice 5f3f3ac287 gnu: btrfs-progs: Add "static" output. 
* gnu/packages/linux.scm (btrfs-progs)[outputs]: New field.
[inputs]: Add "static" outputs of util-linux for libuuid and libblkid.
[arguments]: Add 'build-static' and 'install-static' phases.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:46:21 -04:00
Tobias Geerinckx-Rice df887432be gnu: util-linux: Add "static" output. 
* gnu/packages/linux.scm: (util-linux)[outputs]: New field.
[arguments]: Remove "--disable-static" from #:configure-flags.
Add 'move-static-libraries' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:45:58 -04:00
Tobias Geerinckx-Rice 916627b484 gnu: btrfs-progs: Update to 4.5.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-11 19:39:57 -04:00
Leo Famulari 097e012b5a gnu: e2fsprogs: Fix misleading comment. 
* gnu/packages/linux.scm (e2fsprogs): Fix misleading comment.
 2016-04-11 19:01:38 -04:00
Leo Famulari a94d455f58 gnu: letsencrypt, python-acme: Update to 0.5.0 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.5.0.
(python-acme, python2-acme): Update to 0.5.0.
 2016-04-11 18:39:55 -04:00
Ricardo Wurmus 6dc6099853 gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3. 
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
  New variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus 943bd6279f gnu: Add r-bsgenome-celegans-ucsc-ce6. 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce6): New
  variable.
 2016-04-11 15:11:16 +02:00
Ricardo Wurmus a3e9028770 gnu: Add r-bsgenome-mmusculus-ucsc-mm9. 
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm9): New
  variable.
 2016-04-11 15:11:15 +02:00
Ricardo Wurmus ae2462f7dd gnu: Add r-motifrg. 
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
 2016-04-11 11:03:27 +02:00
Ricardo Wurmus c90a4baff6 gnu: Add r-bsgenome-hsapiens-ucsc-hg19. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
  variable.
 2016-04-11 11:03:27 +02:00
Ricardo Wurmus 936e7d6774 gnu: Add r-seqlogo. 
* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
 2016-04-11 11:03:27 +02:00
Leo Famulari ce8eeaf7a4 gnu: borg: Update to 1.0.1. 
* gnu/packages/backup.scm (borg): Update to 1.0.1.
 2016-04-11 01:38:38 -04:00
Leo Famulari d87fd79953 gnu: vdirsyncer: Update to 0.9.3. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.3.
 2016-04-10 22:31:32 -04:00
Efraim Flashner 4b47cbfa9a gnu: python-werkzeug: Update to 0.11.5. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.5.
 2016-04-10 23:36:58 +03:00
Efraim Flashner 9ba40f05c8 gnu: python-pytest-localserver: Change inputs. 
* gnu/packages/python.scm (python-pytest-localserver)[native-inputs]:
Remove zip.
[proapgated-inputs]: Move python-werkzeug ...
[inputs]: ... to here.
[propagated-inputs]: Move python-pytest, python-requests, python-six ...
[native-inputs]: ... to here.
 2016-04-10 22:45:53 +03:00
Efraim Flashner 630d938fbe gnu: python-pytest-cache: Change inputs. 
* gnu/packages/python.scm (python-pytest-cache)[propagated-inputs]: Move
python-execnet ...
[inputs]: ... to here. Add python-apipkg, python-py, python-pytest.
 2016-04-10 22:38:44 +03:00
Efraim Flashner 584d068f0f gnu: python-execnet: Change inputs. 
* gnu/packages/python.scm (python-execnet)[propagated-inputs]: Move
python-apipkg ...
[inputs]: ... to here.
 2016-04-10 22:32:39 +03:00
Efraim Flashner b43bab3c2a gnu: python-apipkg: Change inputs. 
* gnu/packages/python.scm (python-apipkg)[native-inputs]: Move
python-pytest.
[inputs]: ... to here.
 2016-04-10 22:30:19 +03:00
Efraim Flashner fbe9abcce4 gnu: python-pytest-xdist: Change inputs. 
* gnu/packages/python.scm (python-pytest-xdist)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Move python-execnet, python-py, python-pytest ...
[inputs]: ... to here. Add python-apipkg.
[properties]: Define python2-pytest-xdist.
(python2-pytest-xdist): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 22:07:45 +03:00
Efraim Flashner 54cd239b35 gnu: python-pytest-runner: Define python2-pytest-runner. 
* gnu/packages/python.scm (python-pytest-runner)[properties]: Define
python2-pytest-runner.
[native-inputs]: Remove python-setuptools.
[home-page]: Project has moved to Github.
(python2-pytest-runner)[native-inputs]: Add python2-setuptools.
 2016-04-10 21:17:10 +03:00
Efraim Flashner 545f4a1c3c gnu: python-pytest-cov: Update to 2.2.1. 
* gnu/packages/python.scm (python-pytest-cov): Update to 2.2.1.
[native-inputs]: Remove python-setuptools. Move python-coverage,
python-pytest ...
[inputs]: ... to here.
[properties]: Define python2-pytest-cov.
(python-pytest-cov): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 21:00:42 +03:00
Efraim Flashner eb3d3503f3 gnu: python-parse: Update to 1.6.6. 
* gnu/packages/python.scm (python-parse): Update to 1.6.6.
 2016-04-10 20:52:04 +03:00
Efraim Flashner ed80839b8c gnu: python-tzlocal: Update to 1.2.2. 
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.2.
[native-inputs]: Move python-pytz ...
[inputs]: ... to here.
 2016-04-10 20:45:49 +03:00
Efraim Flashner eebf6f01e4 gnu: python-parsedatetime: Update to 2.1. 
* gnu/packages/python.scm (parsedatetime): Update to 2.1.
[native-inputs]: Remove python-setuptools, add python-nose, python-pyicu.
[properties]: Define python2-variant.
(python2-parsedatetime): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 20:07:57 +03:00
Efraim Flashner 394b8060b1 gnu: python-dateutil-2: Update to 2.5.2. 
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.2.
[inputs]: Remove python-setuptools.
[properties]: Define python2-dateutil-2.
(python2-dateutil-2): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 19:43:27 +03:00
Efraim Flashner 13f3ff3522 gnu: python-keyring: Update to 8.7. 
* gnu/packages/python.scm (python-keyring): Update to 8.7.
[native-inputs]: Remove python-setuptools, python-mock.
[properties]: Define python2-keyring.
(python2-keyring): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 18:02:32 +03:00
Efraim Flashner fe147c4143 gnu: python-h5py: Update to 2.6.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.6.0.
[inputs]: Add python-six.
[native-inputs]: Add python-pkgconfig.
[properties]: Define python2-h5py.
 2016-04-10 17:12:31 +03:00
Efraim Flashner 61c9babb6e gnu: python-pytz: Update to 2016.3. 
* gnu/packages/python.scm (python-pytz): Update to 2016.3.
 2016-04-10 12:43:42 +03:00
Efraim Flashner 3f37db6b0e gnu: python-babel: Update to 2.3.2. 
* gnu/packages/python.scm (python-babel): Update to 2.3.2.
 2016-04-10 12:21:51 +03:00
Efraim Flashner db5567f753 gnu: python-ccm: Update to 2.1.6. 
* gnu/packages/python.scm (python-ccm): Update to 2.1.6.
 2016-04-10 12:16:44 +03:00
Efraim Flashner 286f1bac9e gnu: python-httplib2: Update to 0.9.2. 
* gnu/packages/python.scm (python-httplib2): Update to 0.9.2.
 2016-04-10 12:13:02 +03:00
Efraim Flashner 81b9bbbd57 gnu: python-paramiko: Update to 1.16.0. 
* gnu/packages/python.scm (python-paramiko): Update to 1.16.0.
 2016-04-10 11:57:11 +03:00
Efraim Flashner 623cd1ab18 gnu: youtube-dl: Update to 2016.04.06. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.04.06.
[native-inputs]: Remove python-setuptools.
 2016-04-10 11:17:55 +03:00
Efraim Flashner 6a308947b4 gnu: python-requests: Rearrange inputs. 
* gnu/packages/python.scm (python-requests)[propagated-inputs]: Move
python-py, python-pytest, python-pytest-cov, python-wheel from here...
[native-inputs]: ... to here.
 2016-04-10 10:55:28 +03:00
Efraim Flashner 5b9fe59fbe gnu: livestreamer: Remove extra inputs. 
* gnu/packages/video.scm (livestreamer)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Remove python-singledispatch.
 2016-04-10 10:33:59 +03:00
Efraim Flashner 42aa73b337 gnu: offlineimap: Add sqlite support. 
* gnu/packages/mail.scm (offlineimap)[inputs]: Add python2-pysqlite.
[arguments]: Wrap binary with python2-pysqlite's path.
 2016-04-10 09:01:00 +03:00
Efraim Flashner 58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
John Darrington 9c45c51992 gnu: Add c-graph. 
* gnu/packages/maths.scm (c-graph): New variable.
 2016-04-09 09:16:48 +02:00
Chris Marusich 1c6ae41875 gnu: Add ibus-anthy. 
* gnu/packages/ibus.scm (ibus-anthy): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>.
 2016-04-09 09:36:29 +08:00
Chris Marusich 4862910d0a gnu: Add anthy. 
* gnu/packages/anthy.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-09 09:34:05 +08:00
Kei Yamashita 2331e5e860 gnu: Add wmclock. 
* gnu/packages/gnustep.scm (wmclock): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-08 17:50:10 +03:00
McKinley Olsen 1ccc3da8d2 gnu: pcre2: Update to 10.21. 
gnu/packages/pcre.scm (pcre2): Update to 10.21.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-08 19:28:47 +08:00
Andreas Enge 7d4c6ee878 gnu: singular: Update hash. 
* gnu/packages/algebra.scm (singular)[source]: Update upstream hash. See
  http://www.singular.uni-kl.de:8002/trac/ticket/754 .
 2016-04-08 11:17:46 +02:00
Mark H Weaver 1a9f5e9ff3 gnu: linux-libre-4.1: Update to 4.1.21. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.21.
 2016-04-07 21:20:28 -04:00
David Thompson 4da5fe6f88 gnu: redis: Update to 3.0.7. 
* gnu/packages/databases.scm (redis): Update to 3.0.7.
 2016-04-07 16:44:04 -04:00
Mathieu Lirzin a0c6a36b28 gnu: python-pkgconfig: Add license prefix. 
* gnu/packages/python.scm (python-pkgconfig)[license]: Fix prefix.
 2016-04-07 20:12:14 +02:00
John Darrington c791efde74 gnu: Add macchanger. 
* gnu/packages/networking.scm (macchanger): New variable.
 2016-04-07 19:12:28 +02:00
David Thompson c5b5e275a7 gnu: node: Update to 5.10.0. 
* gnu/packages/node.scm (node): Update to 5.10.0.
 2016-04-07 11:52:02 -04:00
David Thompson 73b8714fb1 gnu: libuv: Update to 1.8.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.8.0.
 2016-04-07 11:52:02 -04:00
Efraim Flashner 5eabbc3e90 gnu: abiword: Add epub, goffice support. 
* gnu/packages/abiword.scm (abiword.scm)[arguments]: Add "epub" and
"goffice" to "enable-plugins" configure flag.
[inputs]: Add goffice, libchamplain, telepathy-glib.
 2016-04-07 11:02:52 +03:00
Andreas Enge 435a0462be gnu: python-cython: Update to 0.24. 
* gnu/packages/python.scm (python-cython): Update to 0.24.
 2016-04-07 00:45:08 +02:00
Andreas Enge 8e45188525 gnu: Add python-cysignals. 
* gnu/packages/python.scm (python-cysignals, python2-cysignals): New
  variables.
 2016-04-07 00:45:08 +02:00
Roel Janssen 9e3ba31c53 gnu: Add r-zlibbioc. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Roel Janssen b669d9c4c8 gnu: Add r-variantannotation. 
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Efraim Flashner 0ea4079f34 gnu: abiword: Update to 3.0.1. 
* gnu/packages/abiword.scm (abiword): Update to 3.0.1.
[source]: Remove 4 patches.
[arguments]: Disable tests.
[inputs]: Add libxslt, replace gtk+-2 with gtk+.
[native-inputs]: Add libtool.
* gnu/packages/patches/abiword-link-plugins-against-backend.patch,
gnu/packages/patches/abiword-no-include-glib-internal-headers.patch,
gnu/packages/patches/abiword-pass-no-undefined-to-linker.patch,
gnu/packages/patches/abiword-use-proper-png-api.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-06 23:15:59 +03:00
Leo Famulari 17946534a4 gnu: hexchat: Update to 2.12.0. 
* gnu/packages/messaging.scm (hexchat): Update to 2.12.0.
 2016-04-06 16:11:57 -04:00
Kei Yamashita bd688698b6 gnu: Add wmcpuload. 
* gnu/packages/gnustep.scm (wmcpuload): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 14:51:27 -04:00
Andreas Enge 4323a5f0fd gnu: Add python-pkgconfig. 
* gnu/packages/python.scm (python-pkgconfig, python2-pkgconfig): New
  variables.
 2016-04-06 20:10:41 +02:00
Roel Janssen 4971d5d072 gnu: Add progress. 
* gnu/packages/admin.scm (progress): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:16:50 +03:00
Kei Yamashita 7407f7fef6 gnu: Add wmnd. 
* gnu/packages/gnustep.scm (wmnd): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-06 09:05:37 +03:00
Andreas Enge aae03c484f gnu: Add singular. 
* gnu/packages/algebra.scm (singular): New variable.
 2016-04-06 01:28:03 +02:00
Tobias Geerinckx-Rice 998afc3608 gnu: Add iodine. 
* gnu/packages/networking.scm (iodine): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-05 23:24:34 +02:00
Andreas Enge 53696f10c1 gnu: Add cddlib. 
* gnu/packages/maths.scm (cddlib): New variable.
 2016-04-05 19:22:36 +02:00
Andreas Enge b146763a86 gnu: Add 4ti2. 
* gnu/packages/maths.scm (4ti2): New variable.
 2016-04-05 18:48:02 +02:00
Andreas Enge 14e6520e2b gnu: Add NTL. 
* gnu/packages/algebra.scm (ntl): New variable.
 2016-04-05 17:43:50 +02:00
Efraim Flashner 588ad54ed3 gnu: mercurial: Update to 3.7.3 [fixes CVE-2016-{3068,3069,3630}]. 
* gnu/packages/version-control.scm (mercurial): Update to 3.7.3.
 2016-04-05 17:31:34 +03:00
Efraim Flashner 877889f3ca gnu: python-futures: Remove variable. 
* gnu/packages/python.scm (python-futures): Remove it.
 2016-04-05 15:02:30 +03:00
Efraim Flashner f71d1a08a1 gnu: git-annex-remote-hubic: Change to python2. 
* gnu/packages/version-control.scm (git-annex-remote-hubic)
[arguments]: Build with python2.
 2016-04-05 15:02:30 +03:00
Kei Yamashita f9ab1da0fa gnu: Add wmbattery. 
* gnu/packages/gnustep.scm (wmbattery): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:32:09 +03:00
Roel Janssen 9b36e25607 gnu: vcftools: Update to 0.1.14. 
* gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.14.
[arguments]: Do not modify phases as it is not needed anymore.
[native-inputs]: Add 'pkg-config'.
[home-page]: Update to new location.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-05 11:29:32 +03:00
Efraim Flashner 17130e3919 gnu: mutt: Update to 1.6.0. 
* gnu/packages/mail.scm (mutt): Update to 1.6.0.
 2016-04-05 11:28:39 +03:00
Efraim Flashner 7a93feb874 gnu: vim: Use 'modify-phases'. 
* gnu/packages/vim.scm (vim)[arguments]: Use 'modify-phases' syntax.
 2016-04-05 10:03:07 +03:00
Leo Famulari c613a21ba6 gnu: mpd: Update to 0.19.14. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.14.
 2016-04-05 00:34:52 -04:00
Mark H Weaver 37b2dba1cc gnu: libextractor: Improve ffmpeg-3 patch. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: Add additional
fixes and harmonize with patches in upstream repository.
 2016-04-04 23:49:48 -04:00
Mark H Weaver fd7fd3c167 gnu: libextractor: Add patch to fix build with ffmpeg-3. 
* gnu/packages/patches/libextractor-ffmpeg-3.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnunet.scm (libextractor)[source]: Add patch.
 2016-04-04 22:55:52 -04:00
Ludovic Courtès ae05e366be system: Define 'GTK_DATA_PREFIX' globally. 
Fixes <http://bugs.gnu.org/23200>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

* gnu/system.scm (operating-system-environment-variables): Add
'GTK_DATA_PREFIX'.
 2016-04-04 23:45:57 +02:00
Raymond Nicholson e71b20e5b5 gnu: mplayer: Update to 1.3.0. 
* gnu/packages/video.scm (mplayer): Update to 1.3.0.
 2016-04-04 16:33:23 -04:00
Raymond Nicholson 2a972b2fdf gnu: gst-libav: Update to 1.8.0. 
* gnu/packages/ffmpeg.scm (gst-libav): Update to 1.8.0.
 2016-04-04 16:27:04 -04:00
Efraim Flashner 49c90efb66 gnu: global: Update to 6.5.4. 
* gnu/packages/code.scm (global): Update to 6.5.4.
 2016-04-04 23:05:30 +03:00
Mark H Weaver 4c95bbba78 gnu: network-manager: Update to 1.0.12. 
* gnu/packages/gnome.scm (network-manager): Update to 1.0.12.
 2016-04-04 15:14:56 -04:00
Efraim Flashner 5c4d98ab50 gnu: scheme48: Update to 1.9.2. 
* gnu/packages/scheme.scm (scheme48): Update to 1.9.2.
 2016-04-04 22:01:40 +03:00
Leo Famulari 2fc629ddc4 gnu: python-pyopenssl: Update to 16.0.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to
16.0.0.
[arguments]: Remove field.
 2016-04-04 12:32:59 -04:00
Leo Famulari 4f363e73f8 gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.1. 
These packages should be udpated together.

* gnu/packages/python.scm (python-cryptography): Update to 1.3.1.
(python-cryptogprahy-vectors): Update to 1.3.1.
 2016-04-04 12:32:59 -04:00
Leo Famulari 61a4332d9e gnu: python-pytest: Update to 2.7.3. 
* gnu/packages/python.scm (python-pytest, python2-pytest): Update to 2.7.3.
 2016-04-04 12:32:59 -04:00
Efraim Flashner 560c07954c gnu: i3-wm: Update to 4.12. 
* gnu/packages/wm.scm (13-wm): Update to 4.12.
 2016-04-04 10:24:31 +03:00
John Darrington 0b65f1a013 gnu: Move pspp from maths.scm to statistics.scm 
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
 2016-04-04 07:15:14 +02:00
Efraim Flashner 16736e0234 gnu: irssi: Update to 0.8.19. 
* gnu/packages/irc.scm (irssi): Update to 0.8.19.
 2016-04-04 07:24:31 +03:00
Efraim Flashner 6c277c8999 gnu: libpsl: Update to 0.13.0. 
* gnu/packages/web.scm (libpsl): Update to 0.13.0.
[arguments]: Remove bootstrap phase.
[inputs]: Add python-2.
[native-inputs]: Remove autoconf, automake, gettext, which, libtool,
pkg-config.
 2016-04-03 23:35:29 +03:00
Leo Famulari 8d9ac92622 gnu: libsrtp: Update to 1.5.4 [fixes CVE-2015-6360]. 
* gnu/packages/telephony.scm (libsrtp): Update to 1.5.4.
 2016-04-03 14:05:12 -04:00
Jochem Raat 0f3449fe3c gnu: check: Update home page URL. 
* gnu/packages/check.scm (check)[home-page]: Update to new location.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-03 20:16:10 +03:00
Alex Kost 000bc04d52 gnu: magit: Update to 2.6.0. 
* gnu/packages/emacs.scm (magit): Update to 2.6.0.
 2016-04-03 20:15:33 +03:00
rain1 c5e1fcd0ae gnu: ffmpeg: Update to 3.0.0. 
* gnu/packages/video.scm (ffmpeg): Update to 3.0.0.
[inputs]: Remove libquvi.
[arguments]: Remove '--enable-libquvi" configure flag, rename mipsdspri1
flag to mipsdsp.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-03 19:39:40 +03:00
Ben Woodcroft e25f017422 gnu: Remove duplicate python-pbr. 
This is a follow-up to commit 1ef09c0c75.

* gnu/packages/openstack.scm (python-pbr, python2-pbr): Move from here ...
* gnu/packages/python.scm: ... to here.
(python-pbr, python2-pbr): Delete duplicate packages.
 2016-04-03 21:09:17 +10:00
Ben Woodcroft 692add53bc gnu: python-lockfile: Update to 0.12.2. 
* gnu/packages/python.scm (python-lockfile): Update to 0.12.2.
[native-inputs]: Add python-pbr.
(python2-lockfile): Update to 0.12.2.
[native-inputs]: Add python2-setuptools, python2-pbr.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft 1804527ab0 gnu: python-lockfile Use 'python2-variant'. 
* gnu/packages/python.scm (python-lockfile): Use 'python2-variant'.
[properties]: New field.
(python2-lockfile): Use 'strip-python2-variant'.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft 1ef09c0c75 gnu: Add python-pbr. 
* gnu/packages/python.scm (python-pbr, python2-pbr): New variables.
 2016-04-03 16:08:11 +10:00
Ben Woodcroft 78c0d323e9 gnu: python-pandas: Update to 0.18.0. 
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.18.0.
[arguments]: Enable tests.
 2016-04-03 16:08:11 +10:00
Efraim Flashner fd7575d479 gnu: pspp: Update to 0.10.1. 
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
 2016-04-03 08:47:35 +03:00
Efraim Flashner e94616b996 gnu: iso-codes: Update to 3.67. 
* gnu/packages/iso-codes.scm (iso-codes): Update to 3.67.
[inputs]: Replace python-2 with python-wrapper.
[home-page]: Use https.
 2016-04-03 07:43:41 +03:00
Ludovic Courtès 0736643424 gnu: transmission: Move '.desktop' file to the "gui" output. 
Fixes <http://bugs.gnu.org/23066>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/packages/bittorrent.scm (transmission)[arguments]: In 'move-gui',
move 'share/applications' to the 'gui' output.
 2016-04-02 22:40:18 +02:00
Efraim Flashner 451c1436a3 gnu: mc: Update to 4.8.16. 
* gnu/packages/mc.scm (mc): Update to 4.8.16.
[source]: Remove patch.
* gnu/packages/patches/mc-fix-ncurses-build.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-02 23:39:32 +03:00
Efraim Flashner 57818b6e3c gnu: gnucash: Update to 2.6.12. 
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.12.
[home-page]: Update to new homepage.
 2016-04-02 22:10:29 +03:00
Ben Woodcroft a754eaf16d gnu: ruby-2.1: Update to 2.1.10. 
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.10.
 2016-04-02 09:16:17 +10:00
Efraim Flashner f04433773d gnu: glpk: Update to 4.60. 
* gnu/packages/maths.scm (glpk): Update to 4.60.
 2016-04-01 16:52:54 +03:00
Ludovic Courtès 915363a3e2 gnu: wicd: Add template for WPA2-TTLS. 
* gnu/packages/patches/wicd-wpa2-ttls.patch: New file.
* gnu/packages/wicd.scm (wicd)[source]: Add it.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-01 13:59:58 +02:00
Ludovic Courtès f5480572d0 gnu: wicd: Update to 1.7.4. 
* gnu/packages/wicd.scm (wicd): Update to 1.7.4.
[source]: Remove 'wicd-template-instantiation.patch'.
* gnu/packages/patches/wicd-template-instantiation.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
 2016-04-01 13:59:58 +02:00
Efraim Flashner dbeaf8f203 gnu: postgresql: Update to 9.5.2. [fixes CVE-2016-2193, CVE-2016-3065] 
* gnu/packages/databases.scm (postgresql): Update to 9.5.2.
 2016-04-01 13:57:21 +03:00
Ricardo Wurmus 6499b70ebf gnu: Add r-ztable. 
* gnu/packages/statistics.scm (r-ztable): New variable.
 2016-04-01 11:46:19 +02:00
Jelle Licht ec67294611 gnu: Add jq. 
* gnu/packages/web.scm: (jq): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:56:30 +03:00
Jelle Licht 2d8cf0b3e7 gnu: Add oniguruma. 
* gnu/packages/textutils.scm (oniguruma): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-04-01 11:38:06 +03:00
alírio eyng 52af45adeb gnu: fontforge: Build fonts bit-reproducibly. 
* gnu/packages/fontutils.scm (fontforge)[source](snippet): Modify
tottf.c.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen 2cdeecbe4d gnu: move miscfiles into gnu-doc.scm 
* gnu/packages/miscfiles.scm: Remove file.
* gnu-sytem.am: Remove it.
* gnu/packages/gnu-doc.scm (miscfiles): Move here.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Jan Nieuwenhuizen ec0730cb67 gnu: Add gnu-standards. 
* gnu/packages/gnu-doc.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
alírio eyng 47268eec13 gnu: font-gnu-freefont-ttf: Update to 20120503 and build from source. 
* gnu/packages/fonts.scm (font-gnu-freefont-ttf): Update to 20120503.
[arguments]: Build from source.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-04-01 00:05:42 +02:00
Efraim Flashner b5afe6f031 gnu: gnupg-2.0: Update to 2.0.30. 
* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.30.
 2016-03-31 21:14:25 +03:00
Taylan Ulrich Bayırlı/Kammer d0457553d5 gnu: Add nmap. 
* gnu/packages/admin.scm (nmap): New variable.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-03-31 02:08:56 -04:00
Chris Marusich 12af303f47 gnu: Add python2-s3cmd. 
* gnu/packages/python.scm (python2-s3cmd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Chris Marusich daeeea7154 gnu: Add python-magic. 
* gnu/packages/python.scm (python-magic, python2-magic): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-30 23:39:47 +02:00
Kei Yamashita 21d1811301 gnu: Add MilkyTracker. 
* gnu/packages/music.scm (milkytracker): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2016-03-30 23:45:44 +03:00
Efraim Flashner ddb8312911 gnu: python2-pbcore: Update to 1.2.8. 
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.8.
[native-inputs]: Add python2-docutils, python2-nose, python2-sphinx.
 2016-03-30 22:45:35 +03:00
rain1 96e9f097ee gnu: linux-libre: Avoid introducing timestamps into the build. 
* gnu/packages/linux.scm (linux-libre)[build-phase]: Set the
KCONFIG_NOTIMESTAMP and KBUILD_BUILD_TIMESTAMP environment variables to
avoid introducing timestamps into the build outputs.
 2016-03-30 15:22:04 -04:00
Efraim Flashner 8caf80fcf4 gnu: libcue: Fix source url. 
* gnu/packages/cdrom.scm (libcue)[source]: Fix url.
[home-page]: Project has moved to Github.
 2016-03-30 13:39:42 +03:00
Roel Janssen fa9f0e6c25 gnu: r-devtools: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.10.0.
   (r-devtools)[propagated-inputs]: Add r-withr.
 2016-03-30 12:02:40 +02:00
Roel Janssen a080e50c15 gnu: Add r-withr. 
* gnu/packages/statistics.scm (r-withr): New variable.
 2016-03-30 12:02:28 +02:00
Ricardo Wurmus f315f4fcab gnu: r-genomation: Update to 1.2.2. 
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.2.2.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus 571f0b63d5 gnu: r-genomicfeatures: Update to 1.22.13. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to
  1.22.13.
 2016-03-30 11:59:16 +02:00
Ricardo Wurmus ffaf72ad96 gnu: r-rtracklayer: Update to 1.30.4. 
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.30.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus ac2d8b0fb8 gnu: r-genomicalignments: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to
  1.6.3.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 7eade1c5f9 gnu: r-summarizedexperiment: Update to 1.0.2. 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to
  1.0.2.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 53fd0f5e1d gnu: r-biostrings: Update to 2.38.4. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.38.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 5fe3115415 gnu: r-genomicranges: Update to 1.22.4. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.22.4.
 2016-03-30 11:59:15 +02:00
Ricardo Wurmus 9cc22d28d8 gnu: r-genomeinfodb: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.6.3.
 2016-03-30 11:59:15 +02:00
Efraim Flashner 48fa9312ab gnu: libpaper: Update source url. 
Reported by shanemikel_ on irc.

* gnu/packages/ghostscript.scm (libpaper)[source]: Update source url to
download from Fedora.
[home-page]: Use https.
 2016-03-30 10:49:03 +03:00
Ludovic Courtès 61cdad351d gnu: guix: Ignore the user's 'GUILE_LOAD_COMPILED_PATH'. 
Reported by <rain1@openmailbox.org>.

* gnu/packages/package-management.scm (guix-0.10.0)[arguments]: Use '=
instead of 'prefix in call to 'wrap-program'.
 2016-03-29 22:13:20 +02:00
Rene Saavedra 3a9a4c51e8 gnu: Add libzapojit. 
* gnu/packages/gnome.scm (libzapojit): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-29 22:13:20 +02:00
Leo Famulari b7fbf297c8 gnu: khal: Disable failing tests. 
* gnu/packages/calendar.scm (khal)[arguments]: Disable failing tests in
'disable-tests' phase.
 2016-03-29 15:35:00 -04:00
Efraim Flashner d1ceedf8b1 gnu: gst-plugins-good: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.0.
[home-page]: Use https.
[arguments]: Disable tests that fail non-deterministically.
 2016-03-29 21:34:52 +03:00
Efraim Flashner 40dad30c5e gnu: gst-plugins-ugly: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner d2b5dec5b0 gnu: python-gst: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner 70e863e53e gnu: gst-plugins-base: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.8.0.
[home-page]: Use https.
 2016-03-29 21:34:52 +03:00
Efraim Flashner ab0a56201d gnu: gstreamer: Update to 1.8.0. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.8.0.
 2016-03-29 21:34:52 +03:00
Ludovic Courtès 50ebd439c7 Merge branch 'version-0.10.0' 2016-03-29 16:13:41 +02:00
Ludovic Courtès f98b48dc51 gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 7611393.
(guix): Set to GUIX-DEVEL.
 2016-03-29 09:35:22 +02:00
宋文武 67c2fc01a0 gnu: Add uwsgi. 
* gnu/packages/web.scm (uwsgi): New variable.
 2016-03-29 11:50:24 +08:00
宋文武 7ad1fee52e gnu: Add cgit. 
* gnu/packages/version-control.scm (cgit): New variable.
 2016-03-29 11:50:24 +08:00
Ludovic Courtès 7611393547 gnu: guix: Default to 0.10.0. 
This updates 58f0aae.

* gnu/packages/package-management.scm (guix): Set to GUIX-0.10.0.
 2016-03-28 23:54:48 +02:00
Ludovic Courtès 58f0aae5cb gnu: guix: Update to 0.10.0. 
* gnu/packages/package-management.scm (guix-0.8.3): Rename to...
(guix-0.10.0): ... this.  Adjust users.
(guix): Set to GUIX-0.10.0.
 2016-03-28 23:38:00 +02:00
Ricardo Wurmus e0b90dbf65 gnu: qtractor: Update to 0.7.5. 
* gnu/packages/music.scm (qtractor): Update to 0.7.5.
 2016-03-28 09:52:16 +02:00
Leo Famulari 36c2c8c826 gnu: beets: Run tests with python-nose. 
* gnu/packages/music.scm (nose)[native-inputs]: Add python-nose.
[arguments]: Replace 'check' and use python-nose.
 2016-03-27 18:24:19 -04:00
Leo Famulari d3e3468fb8 gnu: python-pyechonest: Clean up description. 
* gnu/packages/music.scm (pyechonest)[description]: Remove "open source" from
the description.
 2016-03-26 17:25:13 -04:00
Efraim Flashner e12f047f75 gnu: pspp: Update to 0.10.0. 
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
 2016-03-26 22:39:29 +03:00
David Thompson 8d50632373 gnu: sdl2-ttf: Update to 2.0.14. 
* gnu/packages/sdl.scm (sdl2-ttf): Update to 2.0.14 and remove bundled
  libraries from source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson 64ee72e124 gnu: sdl2-image: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-image): Update to 2.0.1.
 2016-03-26 13:35:06 -04:00
David Thompson efd75ade17 gnu: sdl2-mixer: Update to 2.0.1. 
* gnu/packages/sdl.scm (sdl2-mixer): Update to 2.0.1 and remove bundled
  libraries in source tarball.
 2016-03-26 13:35:06 -04:00
David Thompson a313e0850c gnu: sdl-mixer: Add ModPlug support. 
* gnu/packages/sdl.scm (sdl-mixer)[inputs]: Add libmodplug.
 2016-03-26 13:35:06 -04:00
David Thompson 4c0e59d1a8 gnu: sdl2: Update to 2.0.4. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.4.
 2016-03-26 13:35:06 -04:00
David Thompson 7c776ddcc0 gnu: crossguid: Set explicit file name for source checkout. 
* gnu/packages/kodi.scm (crossguid)[source]: Set explicit file-name to
  satisfy linter.
 2016-03-26 09:52:28 -04:00
Mark H Weaver c7762233fb Revert "gnu: expat: Replace with 2.1.1 [fixes CVE-2015-1283]." 
This reverts commit 6458876597.
 2016-03-25 17:20:57 -04:00
Leo Famulari 15bdd91cc4 gnu: diffoscope: Update to 51. 
* gnu/packages/package-management.scm (diffoscope): Update to 51.
 2016-03-25 17:17:06 -04:00
Leo Famulari 54c30ebcb1 gnu: python-atomicwrites: Update to 1.0.0. 
* gnu/packages/python.scm (python-atomicwrites, python2-atomicwrites):
Update to 1.0.0.
 2016-03-25 17:08:47 -04:00
Mark H Weaver 6458876597 gnu: expat: Replace with 2.1.1 [fixes CVE-2015-1283]. 
* gnu/packages/xml.scm (expat)[replacement]: New field.
(expat-2.1.1): New variable.
 2016-03-25 17:04:28 -04:00
Ludovic Courtès a2da8c173a gnu: guix: Update development snapshot to dd21308. 
* gnu/packages/package-management.scm (guix-devel): Update to dd21308.
 2016-03-25 10:52:25 +01:00
Ricardo Wurmus 7affb2c1ac gnu: lilypond: Fix check for fontforge version. 
* gnu/packages/music.scm (lilypond)[arguments]: Patch configure script
  to find actual fontforge version.
 2016-03-25 10:03:11 +01:00
John Darrington dd21308225 gnu: postgresql: Substitute hard coded "/bin/sh". 
* gnu/packages/databses.scm (postgresql): substitute /bin/sh
with location of bash binary.
 2016-03-25 08:04:56 +01:00
Leo Famulari 43a58615bf gnu: htop: Update to 2.0.1. 
* gnu/packages/admin.scm (htop): Update to 2.0.1.
 2016-03-24 23:06:09 -04:00
Ludovic Courtès 68abb9b04c install: Use 'info-reader' instead of Texinfo 4. 
* gnu/system/install.scm (installation-os)[packages]: Remove TEXINFO-4
since %BASE-PACKAGES already provides the Info reader.
(log-to-info): Use INFO-READER instead of TEXINFO-4.
 2016-03-24 22:47:15 +01:00
Ludovic Courtès 02683c3331 system: Use 'info-reader' instead of Texinfo to avoid dragging Perl. 
* gnu/system.scm (%base-packages): Use INFO-READER instead of TEXINFO.
 2016-03-24 22:47:15 +01:00
Ludovic Courtès 7feebd33ae gnu: Add 'info-reader'. 
* gnu/packages/texinfo.scm (info-reader): New variable.
 2016-03-24 22:47:15 +01:00
Ludovic Courtès 0feefb530f install: Remove cgroup and elogind file systems. 
* gnu/system/install.scm (installation-os): Explicitly list three file
systems instead of using %BASE-FILE-SYSTEMS.
 2016-03-24 22:47:15 +01:00
Ludovic Courtès 2fa909b27b activation: Copy account skeletons silently. 
* gnu/build/activation.scm (copy-account-skeletons): Pass #:log to
'copy-recursively'.
 2016-03-24 22:47:15 +01:00
Ludovic Courtès ee03b75dfb install: Add /tmp as a tmpfs. 
Fixes <http://bugs.gnu.org/23056>.
Reported by Michael Downey <shaggy814@yandex.com>
and Kei <kei@openmailbox.org>.

* gnu/system/install.scm (installation-os)[file-systems]: Add "/tmp".
 2016-03-24 22:47:15 +01:00
Ludovic Courtès cc7234aede services: nscd: Make respawnable. 
* gnu/services/base.scm (nscd-shepherd-service): Remove 'respawn?' field.
 2016-03-24 22:47:15 +01:00
Leo Famulari 229b36617a gnu: python-llfuse-0.41: Update to 0.41.1. 
* gnu/packages/python.scm (python-llfuse-0.41): Update to 0.41.1.
 2016-03-24 15:30:51 -04:00
Leo Famulari 6fc5c11b81 gnu: Add borg. 
* gnu/packages/backup.scm (borg): New variable.
 2016-03-24 15:30:51 -04:00
Leo Famulari 5a39b07f8a gnu: attic: Specify dependency on python-llfuse-0.41. 
* gnu/packages/backup.scm (attic)[inputs]: Specify dependency on
python-llfuse-0.41.
 2016-03-24 15:30:51 -04:00
Leo Famulari cd0569c498 gnu: python-llfuse: Update to 1.0, keep 0.41 variant. 
* gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.0.
(python-llfuse)[properties]: New field.
[license]: Remove 'expat'.
(python2-llfuse): Use 'strip-python2-variant'.
[propagated-inputs]: Add python2-contextlib2.
(python-llfuse-0.41): New variable.
 2016-03-24 15:30:51 -04:00
Leo Famulari bd74be7b8c gnu: python-msgpack: Use 'python2-variant'. 
* gnu/packages/python.scm (python-msgpack)[native-inputs]: Remove field.
[properties]: New field.
(python2-msgpack): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-03-24 15:30:51 -04:00
Leo Famulari ae831df428 gnu: python-msgpack: Update to 0.4.7. 
* gnu/packages/python.scm (python-msgpack, python2-msgpack): Update to 0.4.7.
[source]: Use pypi-uri.
 2016-03-24 15:30:51 -04:00
Alex Kost 453cdf8606 system: Do not create "site-start.el". 
After commits 004ea62 and 092dd65, Emacs can find packages in a system
profile, so it autoloads guix code without additional hacks, which can
be removed now.

* gnu/system.scm (emacs-site-file, emacs-site-directory): Remove.
(operating-system-etc-service): Adjust accordingly.
(operating-system-environment-variables): Remove EMACSLOADPATH.
 2016-03-24 18:49:59 +03:00
Ricardo Wurmus 1d216b6ec9 gnu: Remove "r-repository" property. 
* gnu/packages/bioinformatics.scm (r-biocgenerics, r-s4vectors,
r-iranges, r-genomeinfodb, r-xvector, r-genomicranges)[properties]:
Remove "r-repository" property.
 2016-03-24 16:18:01 +01:00
Andreas Enge 08595262db gnu: pari-gp: Syntactic changes. 
* gnu/packages/algebra.scm (pari-gp)[arguments]: Use modify-phases syntax.
 2016-03-24 14:44:08 +01:00
Ludovic Courtès f2ab925028 services: xorg: Fix ~/.xsession handling. 
Fixes a regression introduced in c510cbb4ec.

* gnu/services/xorg.scm (xinitrc)[builder]: Add missing 'apply' when
XSESSION-FILE exists.
 2016-03-24 11:01:07 +01:00
Efraim Flashner 473dbe9b19 gnu: modem-manager: Update to 1.4.14. 
* gnu/packages/freedesktop.scm (modem-manager): Update to 1.4.14.
 2016-03-24 08:37:07 +02:00
Mark H Weaver 385b1be8d0 gnu: webkitgtk: Update to 2.12.0. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.12.0.
 2016-03-23 18:47:41 -04:00
Ludovic Courtès ee37e1e501 gnu: shepherd: Update to 0.3.1. 
* gnu/packages/admin.scm (shepherd): Update to 0.3.1.
 2016-03-23 23:43:50 +01:00
Nils Gillmann 7b150a24fe gnu: libressl: Update to 2.3.3. 
* gnu/packages/tls.scm (libressl): Update to 2.3.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-03-23 13:39:17 -04:00
Ricardo Wurmus c1f73569be gnu: Add AIDE. 
* gnu/packages/admin.scm (aide): New variable.
 2016-03-23 08:08:02 +01:00
Leo Famulari 6139fed563 gnu: icecast: Update to 2.4.3 [fixes CVE-2015-3026]. 
* gnu/packages/xiph.scm (icecast): Update to 2.4.3.
 2016-03-22 23:13:58 -04:00
Ludovic Courtès 9b1cee97a5 services: postgresql: Use syslog. 
Fixes <http://bugs.gnu.org/23064>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/services/databases.scm (%default-postgres-config): Add
'log_destination' line.
(postgresql-shepherd-service): Add requirement on 'syslogd'.
 2016-03-23 00:23:12 +01:00
Ludovic Courtès d038b674cf doc: Add "lightweight desktop" OS config example. 
* gnu/system/examples/desktop.tmpl (packages): Remove XFCE and
RATPOISON.
(services): Add 'gnome-desktop-service' and 'xfce-desktop-service'.
* gnu/system/examples/lightweight-desktop.tmpl: New file.
* Makefile.am (EXAMPLES): Add it.
* doc.am (OS_CONFIG_EXAMPLES_TEXI): Add
doc/os-config-lightweight-desktop.texi.
* gnu/system/install.scm (/etc/configuration-files)[directory]: Add
lightweight-desktop.tmpl.
 2016-03-23 00:23:12 +01:00
Mark H Weaver 58cc369f32 gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws]. 
Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081,
CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153,
CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731,
CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748,
CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801,
CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928.

* gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10.
[source]: Remove patch.
 2016-03-22 07:38:22 -04:00
Mark H Weaver 1020fb6ac7 gnu: linux-libre-4.1: Update to 4.1.20. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.20.
 2016-03-21 22:53:55 -04:00
Ludovic Courtès cd6cc144e0 Merge branch 'security-updates' 2016-03-22 00:14:03 +01:00
Ricardo Wurmus ffc13e753b gnu: chicken: Build with GCC 4.8. 
* gnu/packages/scheme.scm (chicken)[native-inputs]: Add GCC 4.8.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus 416a5a9a51 gnu: chicken: Disable port tests. 
* gnu/packages/scheme.scm (chicken)[arguments]: Do not run port tests.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus acb3807079 gnu: chicken: Use "modify-phases" syntax. 
* gnu/packages/scheme.scm (chicken)[arguments]: Use "modify-phases"
  syntax.
 2016-03-21 22:08:24 +01:00
Ricardo Wurmus d0d9411015 gnu: chicken: Update to 4.10.0. 
* gnu/packages/scheme.scm (chicken): Update to 4.10.0.
 2016-03-21 22:08:23 +01:00
Leo Famulari b0bb013698 gnu: mutt: Enable header caching. 
* gnu/packages/mail.scm (mutt)[inputs]: Add gdbm.
[arguments]: Pass --enable-hcache to #:configure-flags.
 2016-03-21 16:48:39 -04:00
Efraim Flashner 506379664a gnu: gmtp: Update to 1.3.10. 
* gnu/packages/libusb.scm (gmtp): Update to 1.3.10.
 2016-03-21 20:52:26 +02:00
Ricardo Wurmus c84ceace14 gnu: artanis: Update to 0.1.2. 
* gnu/packages/guile.scm (artanis): Update to 0.1.2.
[arguments]: Set DESTDIR.
 2016-03-21 17:44:39 +01:00
Ricardo Wurmus 71cafa0472 gnu: Add r-doparallel. 
* gnu/packages/statistics.scm (r-doparallel): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus b2cdb0271b gnu: Add r-foreach. 
* gnu/packages/statistics.scm (r-foreach): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus 7a6f5f0323 gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus 264df1a49d gnu: Add r-iterators. 
* gnu/packages/statistics.scm (r-iterators): New variable.
 2016-03-21 15:54:05 +01:00
Ricardo Wurmus 9128db2178 gnu: Add ustr. 
* gnu/packages/textutils.scm (ustr): New variable.
 2016-03-21 15:53:40 +01:00
Efraim Flashner ce16d1dc94 gnu: ddrescue: Update to 1.21. 
* gnu/packages/disk.scm (ddrescue): Update to 1.21.
 2016-03-21 15:22:31 +02:00
Ludovic Courtès c035145968 gnu: udisks: Enforce non-reference of the "doc" output. 
* gnu/packages/freedesktop.scm (udisks)[arguments]: Add
  #:disallowed-references.
 2016-03-20 22:52:33 +01:00
Ludovic Courtès e71ef7adae system: Make sure fonts are searched for in the system profile. 
This fixes a bug whereby fonts in /run/current-system/profile would be
invisible to Fontconfig.

* gnu/packages/fontutils.scm (fontconfig): Add comment about system
profile not being searched.
* gnu/system/shadow.scm (default-skeletons)[fonts.conf-content,
fonts.conf]: New variable.
Add FONTS.CONF to the skeletons.
 2016-03-20 15:27:44 +01:00
Ludovic Courtès 0bd3597bbe gnu: gnome: Add dependency on font-abattis-cantarell. 
* gnu/packages/gnome.scm (gnome)[propagated-inputs]: Add
FONT-CANTARELL.
 2016-03-20 15:05:12 +01:00
Ludovic Courtès 4e8b7502e3 system: Allow account skeletons to be directories. 
* gnu/system/shadow.scm (skeleton-directory): Use 'copy-recursively'
instead of 'copy-file'.
* gnu/build/activation.scm (copy-account-skeletons): Likewise.
 2016-03-20 15:02:38 +01:00
Ludovic Courtès 71be99b8b6 gnu: Add font-abattis-cantarell. 
* gnu/packages/fonts.scm (font-cantarell): New variable.
 2016-03-20 01:07:37 +01:00
Ludovic Courtès 329a702634 gnu: fontforge: Make builds bit-reproducible. 
* gnu/packages/fontutils.scm (fontforge)[source](snippet, modules): New
fields.
 2016-03-19 15:57:07 +01:00
alírio eyng 56586557dd gnu: fontforge: Update to 20150824. 
* gnu/packages/fontutils.scm (fontforge): Update to 20150824.
[inputs]: Add libltdl, libxft, python.
[native-inputs]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-03-19 15:36:26 +01:00