5ae63362ae
import cran: Distinguish Bioconductor data packages.
...
* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor
data packages.
(bioconductor-data-package?): New procedure.
2017-04-05 18:38:51 +02:00
1108a920bd
gnu: sra-tools: Fix glibc naming conflict.
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* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase
"patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25.
2017-04-05 18:06:51 +02:00
beebe43176
gnu: sra-tools: Use "modify-phases" syntax.
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* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases"
syntax.
2017-04-05 18:06:51 +02:00
fc5b12879f
gnu: diamond: Update to 0.8.37.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37.
2017-04-05 22:49:01 +10:00
b23c1a71be
download: Update the GnuPG mirror list.
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* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror.
2017-04-05 07:07:35 -04:00
52b2d666ca
gnu: kdevelop: Update to 5.1.0.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0.
2017-04-05 12:12:34 +02:00
dfee7daedb
gnu: bc: Update to 1.07.
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* gnu/packages/algebra.scm (bc): Update to 1.07.
[native-inputs]: Add ed and texinfo.
[arguments]: Use default ‘configure’ phase.
2017-04-05 03:31:58 +02:00
f0bacad682
gnu: bc: Actually use readline.
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* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’
to #:configure-flags.
2017-04-05 03:31:58 +02:00
5894b60491
gnu: algebra: Re-order imports.
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* gnu/packages/algebra.scm: Order imports alphabetically.
2017-04-05 03:31:58 +02:00
01fe019166
gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.
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* gnu/packages/graphics.scm (openexr)[arguments]: Add
'set-ilmbase-directory-in-pc-file' phase.
2017-04-05 00:53:03 +02:00
f84011d04a
services: cuirass: Wait for networking.
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* gnu/services/cuirass.scm (cuirass-shepherd-service): Add 'networking'
to 'requirements'.
2017-04-05 00:53:03 +02:00
1c6b2d3f98
build: Export register-root procedure.
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* guix/scripts/build.scm: Export register-root procedure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-05 00:53:03 +02:00
8db947169f
gnu: icecat: Use bundled ICU to avoid crashes.
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* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>:
Temporarily comment out "--with-system-icu".
2017-04-04 20:18:38 +02:00
cca906754d
gnu: icecat: Re-enable parallel build.
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* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build.
2017-04-04 20:18:38 +02:00
33b2520175
gnu: python-django: Specify CPE name.
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* gnu/packages/django.scm (python-django, python2-django)[properties]: Add
"cpe-name".
2017-04-04 18:30:52 +02:00
dcc9b6abc7
gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].
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* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7.
2017-04-04 18:01:32 +02:00
4dc12417d2
gnu: gnupg: Update to 2.1.20.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20.
[source]: Remove patch.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-04-04 17:46:28 +02:00
a3dea99107
gnu: python2-cython: Fix build on 32-bit platforms.
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* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch.
* gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-04-04 17:46:28 +02:00
6beaa5a02a
gnu: moc: Add Ogg Vorbis support.
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* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-04-04 15:16:25 +02:00
0d78e37746
gnu: Add qjackctl.
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* gnu/packages/audio.scm (qjackctl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 14:30:00 +02:00
b7506f74df
gnu: glog: Fix name demangling for GCC 5.
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* gnu/packages/patches/glog-gcc-5-demangling.patch: New file.
* gnu/packages/logging.scm (glog)[sources]: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-04-04 14:30:00 +02:00
6c17422eac
utils: Fix handling of shell arguments for xz compression.
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Fixes test failures related to xz compression in tests/utils.scm.
This is a followup to commit 63102406f2
2017-04-03 23:23:39 -04:00
f49ced6827
gnu: youtube-dl: Update to 2017.04.03.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.04.03.
2017-04-04 00:17:58 +02:00
f751b7596d
gnu: perl-email-simple: Update to 2.213.
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* gnu/packages/mail.scm (perl-email-simple): Update to 2.213.
2017-04-04 00:17:58 +02:00
e26f2c67d6
gnu: perl-email-mime: Update to 1.940.
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* gnu/packages/mail.scm (perl-email-mime): Update to 1.940.
2017-04-04 00:17:57 +02:00
153ea992e8
gnu: perl-lingua-en-tagger: Update to 0.28.
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* gnu/packages/language.scm (perl-lingua-en-tagger): Update to 0.28.
2017-04-04 00:17:29 +02:00
5b5b4edfcc
gnu: perl-lingua-en-number-isordinal: Update to 0.05.
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* gnu/packages/language.scm (perl-lingua-en-number-isordinal): Update to 0.05.
2017-04-04 00:17:29 +02:00
e2fb341f8f
gnu: perl-lingua-en-inflect-number: Update to 1.12.
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* gnu/packages/language.scm (perl-lingua-en-inflect-number): Update to 1.12.
2017-04-04 00:17:29 +02:00
3581c3571a
gnu: perl-lingua-en-inflect: Update to 1.901.
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* gnu/packages/language.scm (perl-lingua-en-inflect): Update to 1.901.
2017-04-04 00:17:28 +02:00
84f06e540c
gnu: perl-lingua-en-findnumber: Update to 1.32.
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* gnu/packages/language.scm (perl-lingua-en-findnumber): Update to 1.32.
2017-04-04 00:17:28 +02:00
dd0cfb37da
gnu: perl-db-file: Update to 1.840.
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* gnu/packages/databases.scm (perl-db-file): Update to 1.840.
2017-04-04 00:17:28 +02:00
2273b75154
gnu: perl-dbd-sqlite: Update to 1.54.
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* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.54.
2017-04-04 00:17:28 +02:00
4d40c6aab0
gnu: perl-dbd-pg: Update to 3.5.3.
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* gnu/packages/databases.scm (perl-dbd-pg): Update to 3.5.3.
2017-04-04 00:17:28 +02:00
f73bb91ebe
tests: Adjust search-paths test following the introduction of aarch64.
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Fixes a regression introduced in
3b88f3767d
2017-04-04 00:10:00 +02:00
76c486196f
packages: Catch invalid input errors for structs.
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Reported by Thomas Sigurdsen <thomas.sigurdsen@gmail.com>
at <https://lists.gnu.org/archive/html/help-guix/2017-04/msg00007.html >.
* guix/packages.scm (expand-input): Add 'guard' form around call to
'package-source-derivation'.
* tests/packages.scm (dummy): New test.
2017-04-04 00:10:00 +02:00
3e43166ffc
gexp: 'lower-object' raises an exception when passed an invalid object.
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* guix/gexp.scm (&gexp-error, &gexp-input-error): New error conditions.
(lower-object): Raise &gexp-input-error when 'lookup-compiler' returns #f.
* tests/gexp.scm ("lower-object & gexp-input-error?"): New test.
* guix/ui.scm (call-with-error-handling): Add case for 'gexp-input-error?'.
2017-04-04 00:10:00 +02:00
b98d4ec0aa
gnu: Add python-mando-0.3.1
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* gnu/packages/python.scm (python-mando-0.3.1): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-04 00:10:00 +02:00
b4dcfce51b
gnu: Add cifs-utils.
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* gnu/packages/samba.scm (cifs-utils): New variable.
2017-04-03 21:45:53 +02:00
350a30845c
gnu: python-pexpect: Use python-pytest@3.0.
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* gnu/packages/python.scm (python-pexpect, python2-pexpect)[native-inputs]:
Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
2017-04-03 19:25:57 +02:00
26bad5d7eb
gnu: nss, nss-certs: Update to 3.30.
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* gnu/packages/gnuzilla.scm (nss): Update to 3.30.
* gnu/packages/certs.scm (nss-certs): Update to 3.30.
* gnu/packages/patches/nss-increase-test-timeout.patch: Adjust patch context.
2017-04-03 19:25:57 +02:00
cd158a2b77
gnu: python-cython: Update to 0.25.2.
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* gnu/packages/python.scm (python-cython, python2-cython): Update to 0.25.2.
2017-04-03 19:25:56 +02:00
9a49129651
gnu: audacity: Update to 2.1.3.
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* gnu/packages/audacity.scm (audacity): Update to 2.1.3.
[source]: Fetch gzipped tar archive instead of a zip archive; remove
unnecessary patch.
[native-inputs]: Add autoconf, automake and libtool.
[arguments]: Add autoreconf phase to detect system libraries.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: Delete patch.
* gnu/local.mk: Remove reference to removed patch.
2017-04-03 11:51:52 -04:00
568f977f9c
gnu: emacs-elfeed: Enable tests.
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* gnu/packages/emacs.scm (emacs-elfeed)[arguments]: Add a 'check' phase.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-04-02 23:08:55 -04:00
b53fa16f9c
gnu: brdf-explorer: Use HTTPS source URL.
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* gnu/packages/graphics.scm (brdf-explorer)[source]: Use HTTPS URL.
2017-04-02 20:00:52 -04:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
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* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
9167488490
gnu: jbig2dec: Fix CVE-2016-9601.
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* gnu/packages/patches/jbig2dec-CVE-2016-9601.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (jbig2dec)[source]: Use it.
2017-04-02 19:38:56 -04:00
2a0d5de5a9
Merge branch 'core-updates'
2017-04-03 00:13:06 +02:00
245575eaf3
gnu: guile-git: Install .go files to /site-ccache.
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* gnu/packages/guile.scm (guile-git)[arguments] <bootstrap>: Change
"/ccache" to "/site-ccache" in Makefile.am.
2017-04-03 00:12:51 +02:00
60f37e3cb1
gnu: sddm: Build without greenisland.
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This Wayland compositor is currently abandonware and has known problems.
* gnu/packages/display-managers.scm (sddm)[inputs]: Remove GREENISLAND.
2017-04-02 23:42:56 +02:00
41f6d18fb6
gnu: guitarix: Update to 0.35.3.
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* gnu/packages/audio.scm (guitarix): Update to 0.35.3.
2017-04-02 18:30:42 +02:00
Ricardo Wurmus