f1a2b1cb20
gnu: r-seurat: Update to 2.1.0.
...
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0.
[propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica,
r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr,
r-rcppeigen, r-fastica.
2017-12-18 12:01:35 +01:00
fff9b88439
gnu: Add r-diffusionmap.
...
* gnu/packages/graph.scm (r-diffusionmap): New variable.
2017-12-18 12:01:35 +01:00
007f6d9885
gnu: Add r-ggjoy.
...
* gnu/packages/cran.scm (r-ggjoy): New variable.
2017-12-18 12:01:34 +01:00
f90018e568
gnu: Add r-ggridges.
...
* gnu/packages/cran.scm (r-ggridges): New variable.
2017-12-18 12:01:34 +01:00
ae3f207951
gnu: Add r-scatterplot3d.
...
* gnu/packages/cran.scm (r-scatterplot3d): New variable.
2017-12-18 12:01:34 +01:00
15ef07f00e
gnu: Add r-sdmtools.
...
* gnu/packages/cran.scm (r-sdmtools): New variable.
2017-12-18 12:01:34 +01:00
bf025ff6f2
gnu: Add r-dtw.
...
* gnu/packages/cran.scm (r-dtw): New variable.
2017-12-18 12:01:34 +01:00
ae16426007
gnu: Add r-ica.
...
* gnu/packages/cran.scm (r-ica): New variable.
2017-12-18 12:01:34 +01:00
8271b8d22a
gnu: r-seurat: Fix ModularityOptimizer.jar.
...
* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class
attribute in manifest.
2017-12-18 12:01:34 +01:00
b6313997ad
gnu: qmidiarp: Update to 0.6.5.
...
* gnu/packages/music.scm (qmidiarp): Update to 0.6.5.
2017-12-18 12:01:33 +01:00
cf31d5e114
gnu: Add noise-repellent.
...
* gnu/packages/audio.scm (noise-repellent): New variable.
2017-12-18 12:01:33 +01:00
13edf1b9ea
gnu: Add aj-snapshot.
...
* gnu/packages/music.scm (aj-snapshot): New variable.
2017-12-18 12:01:33 +01:00
39b335849b
gnu: Add jack-capture.
...
* gnu/packages/music.scm (jack-capture): New variable.
2017-12-18 12:01:33 +01:00
4071379357
gnu: Add qjackrcd.
...
* gnu/packages/audio.scm (qjackrcd): New variable.
2017-12-18 12:01:33 +01:00
92b36e3aa5
gnu: Add whysynth.
...
* gnu/packages/music.scm (whysynth): New variable.
2017-12-18 12:01:33 +01:00
f7ce213404
gnu: Add sonivox-eas.
...
* gnu/packages/music.scm (sonivox-eas): New variable.
2017-12-18 12:01:32 +01:00
2ca712bdba
vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.
...
* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci.
* gnu/system/vm.scm (common-qemu-options): Likewise.
2017-12-18 00:39:40 -05:00
87dbb634a9
gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].
...
* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n.
(openssl-1.0.2m): Replace with ...
(openssl-1.0.2n): ... this updated version. Update comment.
2017-12-17 21:10:45 -05:00
98cf8ca89a
gnu: Add mod-wsgi.
...
* gnu/packages/web.scm (mod-wsgi): New variable.
2017-12-17 20:46:46 +00:00
e0d96774dd
gnu: system: vm: Use loose cache for 9p file system.
...
This improves the performance of the shared store for operations involving
lots of files, e.g. searching through the store.
* gnu/system/vm.scm (mapping->file-system): Add cache=loose to options.
2017-12-17 20:46:40 +00:00
56d924a59b
gnu: grammalecte: Fix 'license' field.
...
* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to
'gpl3+'.
2017-12-17 21:38:03 +01:00
e8a051ee7c
services: certbot: Fix certbot renewal job.
...
Quote the list of hosts, to avoid generating a broken job definition.
* gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when
passing them in to the job gexp.
2017-12-17 20:37:12 +00:00
ad564a06ad
gnu: Add grammalecte.
...
* gnu/packages/dictionaries.scm (grammalecte): New variable.
2017-12-17 18:58:17 +01:00
217f704c6a
gnu: gourmet: Fix runtime failure and enhance plugin.
...
Fixes <https://bugs.gnu.org/29227 >.
Reported by Caleb Herbert <csh@bluehome.net>.
* gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml.
[arguments]: Custom install phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-12-17 17:22:31 +01:00
f845793237
gnu: pinentry-tty: Add meta-data for 'guix refresh'.
...
* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field.
2017-12-17 16:49:45 +01:00
e25ca462e5
services: cleanup: Remove "/run/udev/watch.old" directory.
...
* gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory.
2017-12-17 08:32:37 +01:00
bc3d607748
gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].
...
* gnu/packages/code.scm (global): Update to 6.6.1.
2017-12-17 08:51:26 +02:00
bef02e9e1c
gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].
...
* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6.
2017-12-16 17:04:05 -05:00
1475d5c6c7
gnu: krita: Enhance krita.
...
* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr.
[native-inputs]: Add vc.
[arguments]: Set path to headers for ilmbase.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2017-12-16 16:50:31 -05:00
e908a5af89
gnu: borg: Fix a data loss bug.
...
See <https://github.com/borgbackup/borg/issues/3444 > for more information.
* gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/backup.scm (borg)[source]: Use it.
2017-12-16 16:33:32 -05:00
ca6182a1be
gnu: guix: Update snapshot to 02345c.
...
* gnu/packages/package-management.scm (guix): Update to 02345c.
2017-12-16 18:43:49 +01:00
25504aaff8
gnu: lookingglass: Limit to Intel compatable systems.
...
* gnu/packages/virtualization.scm (lookingglass)[supported-systems]: New
field.
2017-12-16 19:19:15 +02:00
d9f65bd32d
gnu: gx-saturator-lv2: Update to 0-3.605330f43.
...
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-3.605330f43.
2017-12-16 18:06:08 +01:00
d921a1f4dd
gnu: gx-slow-gear-lv2: Update to 0-3.5d37e775b.
...
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-3.5d37e775b.
2017-12-16 18:06:08 +01:00
1b74b126fe
gnu: gx-vbass-preamp-lv2: Update to 0-2.eb999b0ca.
...
* gnu/packages/music.scm (gx-vbass-preamp-lv2): Update to 0-2.eb999b0ca.
[inputs]: Add gtk+-2.
[native-inputs]: Add pkg-config.
(gx-overdriver-lv2, gx-tone-mender-lv2, gx-push-pull-lv2,
gx-switchless-wah-lv2): Inherit from gx-guvnor-lv2.
2017-12-16 18:06:08 +01:00
67df7164e0
gnu: Add libvdpau-va-gl.
...
* gnu/packages/video.scm (libvdpau-va-gl): New variable.
* gnu/packages/patches/libvdpau-va-gl-unbundle.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-12-16 18:58:50 +02:00
02345c963e
gnu: Add knights.
...
* gnu/packages/games.scm (knights): New variable.
2017-12-16 10:23:05 +01:00
341bddb315
gnu: axoloti-runtime: Update ChibiOS URL.
...
* gnu/packages/axoloti.scm (axoloti-runtime)[inputs]: Update URL for ChibiOS
sources.
2017-12-16 09:01:57 +01:00
fe049d2180
gnu: mod-utilities: Update to 0-2.80ea3ea9f.
...
* gnu/packages/music.scm (mod-utilities): Update to 0-2.80ea3ea9f.
[arguments]: Set PREFIX and CC.
2017-12-16 09:01:57 +01:00
0febd67387
gnu: gx-vintage-fuzz-master-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2)[source]: Fetch from git.
2017-12-16 09:01:57 +01:00
5057535f29
gnu: gx-super-fuzz-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-super-fuzz-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
d42c66132e
gnu: gx-voodoo-fuzz-lv2: Fetch sources from git
...
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
37519239ac
gnu: gx-hyperion-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-hyperion-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
48b95a193c
gnu: gx-suppa-tone-bender-lv2: Fetch sources from git.
...
* gnu/packages/music.scm (gx-suppa-tone-bender-lv2)[source]: Fetch from git.
2017-12-16 09:01:56 +01:00
45ab28a713
gnu: gx-vbass-preamp-lv2: Inherit phases from gx-guvnor-lv2.
...
* gnu/packages/music.scm (gx-vbass-preamp-lv2)[arguments]: Remove field.
2017-12-16 09:01:56 +01:00
6ac8c78c89
gnu: gx-guvnor-lv2: Download sources from git.
...
* gnu/packages/music.scm (gx-guvnor-lv2)[source]: Download from git.
[arguments]: Decouple "install" target from build target.
2017-12-16 09:01:56 +01:00
4b35953257
gnu: gx-guvnor-lv2: Correct license.
...
* gnu/packages/music.scm (gx-guvnor-lv2)[license]: Use GPLv3+.
2017-12-16 09:01:55 +01:00
86e6b4c931
services: base: Use make-static-device-nodes.
...
Fixes <https://bugs.gnu.org/22050 >.
* gnu/services/base.scm (udev-shepherd-service): Use make-static-device-nodes.
2017-12-16 07:33:12 +01:00
97817e7f18
linux-boot: Add make-static-device-nodes.
...
* gnu/build/linux-boot.scm (make-static-device-nodes): New variable.
(<device-node>): New variable.
(read-static-device-nodes): New variable.
(report-system-error): New variable.
(catch-system-error): New variable.
(create-device-node): New variable.
(mkdir-p*): New variable.
Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
2017-12-16 07:33:09 +01:00
5985d01bd8
gnu: mutt: Update to 1.9.2.
...
* gnu/packages/mail.scm (mutt): Update to 1.9.2.
2017-12-15 23:18:02 -05:00
Ricardo Wurmus