Commit Graph

640 Commits (f1ae27b6088da4dbe87024f9e9be0eae50414403)

Author SHA1 Message Date
Ricardo Wurmus a6ec5b7043
gnu: r-withr: Update to 2.1.0.
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
Ricardo Wurmus fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fb415cb50
gnu: r-purrr: Update to 0.2.4.
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
Ricardo Wurmus c8818f5577
gnu: r-irlba: Update to 2.3.1.
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
Ricardo Wurmus 116e9837b5
gnu: r-checkmate: Update to 1.8.5.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
Ricardo Wurmus fde66e3018
gnu: r-multitaper: Update to 1.0-14.
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
Ricardo Wurmus 0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
Ricardo Wurmus b5a2f37157
gnu: r-pryr: Update to 0.1.3
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
Ricardo Wurmus bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
Ricardo Wurmus 1f6f4c40c1
gnu: Add r-tgconfig.
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
Ricardo Wurmus 7941d1ed5d
gnu: Add r-tgstat.
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
Efraim Flashner 8ba3f751b6
gnu: r-nloptr: Update package hash.
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.

* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
2017-10-26 10:46:02 +03:00
Kyle Meyer 4c77abc4da
gnu: Add r-forcats.
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 16:24:03 +02:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Ricardo Wurmus e059bdc9a7
gnu: r-tidyr: Update to 0.7.2.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
2017-10-17 20:58:24 +02:00
Ricardo Wurmus d8455fe146
gnu: r-tidyselect: Update to 0.2.2.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
2017-10-17 20:58:24 +02:00
Ricardo Wurmus c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
2017-10-17 20:58:24 +02:00
Ricardo Wurmus 711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2.
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
2017-10-17 20:58:23 +02:00
Ricardo Wurmus 767ad2f7ad
gnu: r-chron: Update to 2.3-51.
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
2017-10-17 20:58:23 +02:00
Ricardo Wurmus dc6cb56dec
gnu: r-dplyr: Update to 0.7.4.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
2017-10-17 20:58:23 +02:00
Roel Janssen 6de897ac5a
gnu: Add r-ggdendro.
* gnu/packages/statistics.scm (r-ggdendro): New variable.
2017-10-11 10:02:08 +02:00
Ricardo Wurmus 6048986c89
gnu: r-lme4: Update to 1.1-14.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 26cd4194ef
gnu: r-doparallel: Update to 1.0.11.
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 7147d8f7ad
gnu: r-checkmate: Update to 1.8.4.
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
2017-09-28 22:00:44 +02:00
Ricardo Wurmus 2c49184e2c
gnu: r-backports: Update to 1.1.1.
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
2017-09-28 22:00:43 +02:00
Ricardo Wurmus 1344deb937
gnu: r-minimal: Update to 3.4.2.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
2017-09-28 20:21:18 +02:00
Ricardo Wurmus 91316f31d4
gnu: r-glmnet: Update to 2.0-13.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
2017-09-24 11:36:17 +02:00
Ricardo Wurmus d9400ee46a
gnu: r-segmented: Update to 0.5-2.2.
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
2017-09-24 11:36:17 +02:00
Ricardo Wurmus 29457c43bf
gnu: r-mgcv: Update to 1.8-22.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
2017-09-24 11:36:17 +02:00
Ricardo Wurmus 2c67f96b1b
gnu: r-glmnet: Update to 2.0-12.
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 0b2fc9836b
gnu: r-lambda-r: Update to 1.2.
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
2017-09-18 14:23:03 +02:00
Ricardo Wurmus 9f14fffea6
gnu: r-gridextra: Update to 2.3.
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus 37c6a738f3
gnu: r-dplyr: Update to 0.7.3.
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus b0c8cba485
gnu: r-crayon: Update to 1.3.4.
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus ea008095c3
gnu: r-svglite: Update to 1.2.1.
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus 7904531e5b
gnu: r-mgcv: Update to 1.8-21.
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
2017-09-18 14:23:02 +02:00
Ricardo Wurmus d9c65e5a9c
gnu: r-caret: Update to 6.0-77.
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
2017-09-18 11:33:26 +02:00
Ricardo Wurmus 9272144a88
gnu: r-rstudioapi: Update to 0.7.
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
2017-09-18 11:33:26 +02:00
Ricardo Wurmus 0dc3b4d41e
gnu: r-openssl: Update to 0.9.7.
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
2017-09-18 11:33:25 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
2017-09-05 16:59:45 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect.
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1.
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00