7138c48e6e
gnu: r-survival: Update to 2.42-6.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22 00:03:44 +02:00
311f06c94a
gnu: Add sqlcrush.
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* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22 00:03:43 +02:00
9763102bd7
gnu: Add python-pymysql.
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* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New
public variables.
2018-08-22 00:03:43 +02:00
f998453559
gnu: luakit: Fix crash on startup.
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* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the
wrapping phase.
This fixes a crash when no configuration file is present in the user's home
directory. It allows luakit to use it's own default configuration files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21 23:27:09 +02:00
c305ac30c3
gnu: guile-ssh: Don't build libguile-ssh.a.
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* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21 23:27:08 +02:00
f7dfda2c73
gremlin: 'elf-dynamic-info-needed' test is no longer skipped.
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* tests/gremlin.scm (%guile-executable): Use /proc/self/exe instead
of (command-line). For a while now, the first element of (command-line)
was "./build-aux/test-driver.scm"; consequently the test was always
skipped.
2018-08-21 23:27:08 +02:00
f43d2dcd80
linux-modules: Adjust 'section-contents' procedure.
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* gnu/build/linux-modules.scm (section-contents): Honor SECTION as was
intended.
(modinfo-section-contents): Pass 'section-contents' a section, not a
section name.
2018-08-21 23:27:08 +02:00
a81b59b1bf
inferior: Adjust for Guile 2.0.
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Partly fixes <https://bugs.gnu.org/32326 >.
Reported by Michael Bowcutt <mbowcutt@riseup.net>.
* guix/inferior.scm (open-inferior): Wrap 'setvbuf' call in 'cond-expand'.
2018-08-21 23:27:08 +02:00
6cd2c4a83c
gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].
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* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21 11:16:30 -04:00
2fbc38e33b
gnu: python-paramiko: Add some missing dependencies.
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* gnu/packages/python-crypto.scm (python-paramiko,
python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21 11:04:47 -04:00
15e57838c6
gnu: asymptote: Use minimal texlive-union.
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* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:32:22 +02:00
756fc3e1ef
gnu: texlive-latex-base: Include support files.
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* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21 16:32:22 +02:00
9b02a79bb0
gnu: mit-scheme: Use minimal texlive-union.
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* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21 16:30:22 +02:00
dece8c91a9
build-system/asdf: Fix typo in "dependency".
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* guix/build-system/asdf.scm (default-lisp): Fix typo in "dependency".
2018-08-21 16:27:03 +02:00
49dcfb5045
gnu: sl: Don't use unstable tarball.
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* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21 07:17:06 +02:00
20b5b97381
gnu: python-rpy2: Update to 2.9.4.
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* gnu/packages/python.scm (python-rpy2): Update to 2.9.4.
[arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM*
now that we can.
2018-08-21 07:17:06 +02:00
db09a450d2
gnu: python-rpy2: Update home page.
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* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21 07:17:05 +02:00
93f9e0d9e9
gnu: r-iterators: Update to 1.0.10.
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* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21 07:17:05 +02:00
4370881631
gnu: r-foreign: Update to 0.8-71.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21 07:17:05 +02:00
6fb6ac6857
gnu: services: Fix pcscd activation bug.
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Fixes: <https://bugs.gnu.org/32478 >.
* gnu/services/security-token.scm (pcscd-activation): Idempotently create the
/var/lib/pcsc symlink so that it does not fail when it already exists.
2018-08-20 21:43:56 -07:00
6d863cdedd
gnu: r-openssl: Update to 1.0.2.
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* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21 03:25:42 +02:00
4481004fa4
gnu: r-modeltools: Update to 0.2-22.
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* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-21 03:25:41 +02:00
8ecf3f7ea5
gnu: mysql: Update to 5.7.23.
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* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20 20:17:20 +02:00
7cbf06d8c2
gnu: mysql: Fix build.
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MySQL demands boost@1.59.0, and lying about it no longer works:
sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’:
sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token
catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &)
^
[...]
* gnu/packages/databases.scm (boost-for-mysql): New variable.
(mysql)[inputs]: Use that instead of the regular boost.
[arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20 20:17:20 +02:00
725449bd7a
gnu: python-pyodbc: Update to 4.0.24.
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* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20 20:17:19 +02:00
28635e5266
gnu: python-mysqlclient: Update to 1.3.13.
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* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20 20:17:19 +02:00
db4e76416c
gnu: perl-dbd-sqlite: Update to 1.58.
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* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20 20:17:19 +02:00
9c112bee91
gnu: r-energy: Update to 1.7-5.
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* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
2018-08-20 20:17:19 +02:00
8b0701d97a
gnu: r-tinytex: Update to 0.6.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.6.
[propagated-inputs]: Add r-xfun.
2018-08-20 20:17:18 +02:00
2045af8035
gnu: r-xfun: Update to 0.3.
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* gnu/packages/cran.scm (r-xfun): Update to 0.3.
2018-08-20 20:17:18 +02:00
9b77f724c0
gnu: r-jomo: Update to 2.6-3.
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* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
2018-08-20 20:17:18 +02:00
cd4abb6d4a
gnu: r-trend: Update to 1.1.1.
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* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
2018-08-20 20:17:18 +02:00
dc98bbcad4
gnu: r-lava: Update to 1.6.3.
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* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
2018-08-20 20:17:17 +02:00
632cefdac9
gnu: r-mitml: Update to 0.3-6.
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* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
2018-08-20 20:17:17 +02:00
658e37b6e8
gnu: r-vgam: Update to 1.0-6.
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* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
2018-08-20 20:17:17 +02:00
cfad074ef5
nls: Update 'fr' translation.
2018-08-20 14:02:08 -04:00
52773e5cf4
gnu: python-py: Use HTTPS home page.
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* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
2018-08-20 16:36:20 +02:00
c85626bb0f
gnu: xpad: Update to 5.1.0.
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* gnu/packages/gnome.scm (xpad): Update to 5.1.0.
[arguments]: Remove obsolete ‘run-autogen’ phase.
2018-08-20 16:35:55 +02:00
bc2f9dc3ce
gnu: emacs-f: Update to 0.20.0.
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* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
2018-08-20 16:35:55 +02:00
bd0570f21d
gnu: emacs-f: Don't use unstable tarball.
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* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2018-08-20 16:35:55 +02:00
cb4baa4da6
gnu: gimp: Report bugs to Guix.
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Upstream prints this when running ./configure. Take the hint.
NOTE: if you plan on packaging GIMP for distribution, it is
recommended to override the bug report URL with option:
--with-bug-report-url=https://example.com/
so that you can filter packaging bugs from core bugs before
reporting upstream.
* gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
2018-08-20 16:35:54 +02:00
0f83d6029e
gnu: gimp: Update to 2.10.6.
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* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
2018-08-20 16:35:54 +02:00
901888a854
gnu: gegl: Update to 0.4.8.
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* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
2018-08-20 16:35:54 +02:00
3cae7f582e
gnu: babl: Update to 0.1.56.
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* gnu/packages/gimp.scm (babl): Update to 0.1.56.
2018-08-20 16:35:54 +02:00
bab4dc58f7
import: github: Filter out tags that don't look like version numbers.
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* guix/import/github.scm (latest-released-version): Filter out RELEASE
if it doesn't start with digit.
2018-08-20 16:32:18 +02:00
64bcc76c00
gnu: guile-ssh: Update to 0.11.3.
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* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
2018-08-20 16:32:18 +02:00
0ec3800274
gnu: guile-json: Update to 1.1.1.
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* gnu/packages/guile.scm (guile-json): Update to 1.1.1.
[source]: Remove snippet.
[native-inputs]: Add PKG-CONFIG.
2018-08-20 16:32:18 +02:00
45c01189cc
import: github: Get /tags when /releases returns the empty list.
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This allows "guix refresh" to work for many packages where it would
previously fail with "no updater for PACKAGE".
* guix/import/github.scm (fetch-releases-or-tags): New procedure.
(latest-released-version): Use it instead of calling 'json-fetch'.
Adjust 'hash-ref' call.
2018-08-20 16:32:18 +02:00
2766282f5a
import: github: Request API v3 in the 'Accept' header.
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* guix/import/json.scm (json-fetch): Add #:headers argument and honor it.
* guix/import/github.scm (latest-released-version): Pass #:headers to
'json-fetch'.
2018-08-20 16:32:18 +02:00
a50eed201b
gnu: guile-redis: Update to 1.0.0.
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* gnu/packages/guile.scm (guile-redis): Update to 1.0.0.
[source]: Fetch from github.com. Remove snippet.
[native-inputs]: Add AUTOCONF, AUTOMAKE, and PKG-CONFIG.
2018-08-20 16:32:17 +02:00
Tobias Geerinckx-Rice