45b469a472
gnu: Add r-rvcheck.
...
* gnu/packages/cran.scm (r-rvcheck): New variable.
2019-01-07 18:44:04 +01:00
61d7334906
gnu: Add r-tidytree.
...
* gnu/packages/cran.scm (r-tidytree): New variable.
2019-01-07 18:44:04 +01:00
a6e4413d64
gnu: Add r-colorramps.
...
* gnu/packages/cran.scm (r-colorramps): New variable.
2019-01-07 18:44:04 +01:00
e37935e457
gnu: Add r-wordcloud.
...
* gnu/packages/cran.scm (r-wordcloud): New variable.
2019-01-07 18:44:04 +01:00
f3949fecb3
gnu: Add r-waveslim.
...
* gnu/packages/cran.scm (r-waveslim): New variable.
2019-01-07 18:44:04 +01:00
db084d79ea
gnu: Add r-tiff.
...
* gnu/packages/cran.scm (r-tiff): New variable.
2019-01-07 18:44:04 +01:00
44b0c5b5b1
gnu: Add r-fftwtools.
...
* gnu/packages/cran.scm (r-fftwtools): New variable.
2019-01-07 18:44:03 +01:00
71601a5d92
gnu: Add r-softimpute.
...
* gnu/packages/cran.scm (r-softimpute): New variable.
2019-01-07 18:44:03 +01:00
03a3ec5e18
gnu: Add r-adgoftest.
...
* gnu/packages/cran.scm (r-adgoftest): New variable.
2019-01-07 18:44:03 +01:00
a50abb3614
gnu: Add r-gsl.
...
* gnu/packages/cran.scm (r-gsl): New variable.
2019-01-07 18:44:03 +01:00
ced51a204e
gnu: Add r-stabledist.
...
* gnu/packages/cran.scm (r-stabledist): New variable.
2019-01-07 18:44:03 +01:00
dcd1aa2e64
gnu: perl-lingua-translit: Update to 0.28.
...
* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
2019-01-07 19:42:41 +02:00
4e5b8f7215
gnu: Add containerd.
...
* gnu/packages/docker.scm (containerd): New variable.
2019-01-07 16:41:17 +01:00
7f2d67c826
gnu: Add dummy linker for arm-elf.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
2019-01-07 16:39:35 +01:00
2a2760a08f
gnu: Move R packages from geo.scm to cran.scm.
...
* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere,
r-ggmap): Move from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:55:06 +01:00
576e74eee8
gnu: emacs-ess: Move to (gnu packages statistics).
...
* gnu/packages/emacs.scm (emacs-ess): Move from here...
* gnu/packages/statistics.scm (emacs-ess): ...to here.
2019-01-07 15:55:06 +01:00
61f2587db9
gnu: python-rpy2: Move to (gnu packages statistics).
...
* gnu/packages/python.scm (python-rpy2): Move from here...
* gnu/packages/statistics.scm (python-rpy2): ...to here.
2019-01-07 15:55:06 +01:00
e0d3f4bf1a
gnu: Remove reference to (gnu packages statistics).
...
* gnu/packages/web.scm: Remove obsolete use-module clause.
2019-01-07 15:55:06 +01:00
d9bec9a87b
gnu: r-rmysql: Move from databases.scm to cran.scm
...
* gnu/packages/databases.scm (r-rmysql): Move from here...
* gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-07 15:55:06 +01:00
41a010875b
gnu: biber: Update to 2.12.
...
* gnu/packages/tex.scm (biber): Update to 2.12.
[source]: Use 'git-fetch'. Add patch.
[inputs]: Add perl-file-slurper. Remove perl-file-slurp.
* gnu/packages/patches/biber-fix-encoding-write.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-01-07 15:40:58 +01:00
60a166c629
gnu: r-feather: Move from serialization.scm to cran.scm.
...
* gnu/packages/serialization.scm (r-feather): Move from here...
* gnu/packages/cran.scm (r-feather): ...to here.
2019-01-07 15:21:09 +01:00
67eebb19b7
gnu: Fix top-level circular references between emacs.scm and llvm.scm.
...
Previously, loading either of these two modules could fail somewhat
non-deterministically because each top-level was referencing a variable
defined by the other module's top-level.
* gnu/packages/emacs.scm (package-elisp-from-package): Move to...
* gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep
private.
2019-01-07 15:09:30 +01:00
37e461e6f4
gnu: perl-file-slurper: Update to 0.012.
...
* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012.
[native-inputs]: Add perl-test-warnings.
2019-01-07 15:08:08 +01:00
92ce188331
gnu: Move R packages from web.scm to cran.scm.
...
* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools,
r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny,
r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these
from here...
* gnu/packages/cran.scm: ...to here.
2019-01-07 15:05:27 +01:00
3a3d4d9d54
Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files"
...
This reverts commit 5bc2e14add
2019-01-07 14:58:40 +01:00
6fd2ed23ac
gnu: mantis: Limit to x86_64-linux.
...
* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
2019-01-07 15:47:34 +02:00
e97b23e4bd
gnu: package-elisp-from-package: Clarify docstring.
...
* gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify.
2019-01-07 14:45:21 +01:00
5bc2e14add
gnu: Use package-elisp-from-package for clangs emacs lisp files
...
Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename.
Also remove package-from-clang-elisp-file as it is not needed anymore.
* gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package
* gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package
* gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function
2019-01-07 14:45:21 +01:00
7d5856bd45
gnu: Add package-elisp-from-package
...
Add a function to generate package definitions that packages single elisp
files from other packages.
* gnu/packages/emacs.scm (package-elisp-from-package): New function
2019-01-07 14:45:21 +01:00
915c6bf60c
gnu: python2-fastlmm: Move to machine-learning.scm.
...
This is a step towards removing OCaml modules from the closure
of (gnu packages python).
* gnu/packages/python.scm (python2-fastlmm): Move to...
* gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
2019-01-07 14:41:01 +01:00
6fd5a80dbe
gnu: Remove unnecessary build-side module imports.
...
* gnu/packages/batik.scm, gnu/packages/boost.scm,
gnu/packages/calendar.scm, gnu/packages/gl.scm,
gnu/packages/lua.scm, gnu/packages/qt.scm, gnu/packages/simulation.scm,
gnu/packages/terminals.scm: Remove unnecessary import of (guix build
utils).
* gnu/packages/emacs.scm: Remove unnecessary imports of (guix ...).
* gnu/packages/libcanberra.scm: Use (srfi srfi-1) instead of (guix build
utils) for 'alist-delete'.
* gnu/packages/wxwidgets.scm: Likewise.
2019-01-07 14:41:00 +01:00
db1eb632be
gnu: Move Emacs modes for Dedukti to ocaml.scm.
...
This removes OCaml-related modules from the closure of (gnu packages
emacs).
* gnu/packages/emacs.scm (emacs-dedukti-mode, emacs-flycheck-dedukti):
Move to ...
* gnu/packages/ocaml.scm: ... here.
2019-01-07 14:41:00 +01:00
59a075047d
gnu: Move OCaml packages away from maths.scm.
...
This removes (gnu packages ocaml) and related build system modules from
the closure of (gnu packages maths).
* gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to...
* gnu/packages/ocaml.scm: ... here.
2019-01-07 14:41:00 +01:00
54ddb6a154
lint: Avoid 'dirname' call at the top level.
...
* guix/scripts/lint.scm (%distro-directory): Wrap in 'mlambda'.
(check-patch-file-names): Adjust accordingly.
2019-01-07 14:41:00 +01:00
46cf4cd676
Remove (guix build pull).
...
This module had been unused since commit
5f93d97005
2019-01-07 14:40:59 +01:00
3b451546ed
gnu: Add rmlint.
...
* gnu/packages/disk.scm (rmlint): New variable.
2019-01-07 14:32:44 +01:00
e0aa5b5bbf
gnu: Add prosody-http-upload.
...
* gnu/packages/messaging.scm (prosody-http-upload): New variable.
2019-01-07 14:15:57 +01:00
e942813aac
gnu: Add mantis.
...
* gnu/packages/bioinformatics.scm (mantis): New variable.
2019-01-07 11:56:18 +01:00
ad6f13308b
gnu: Add sdsl-lite.
...
* gnu/packages/datastructures.scm (sdsl-lite): New variable.
2019-01-07 11:56:14 +01:00
c71bbfcca9
gnu: autoconf-archive: Update to 2019.01.06.
...
* gnu/packages/autotools.scm (autoconf-archive): Update to 2019.01.06.
2019-01-07 11:19:06 +02:00
4d674b4143
gnu: Add jose.
...
* gnu/packages/jose.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-01-07 10:15:37 +02:00
bd86a1bede
gnu: Add slurp.
...
* gnu/packages/image.scm (slurp): New variable.
2019-01-07 08:31:14 +01:00
c824dedf71
gnu: libarchive: Replace with libarchive 3.3.3 and fix CVE-2018-{1000877,1000878,1000880}.
...
* gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS.
[replacement]: New field.
(libarchive-3.3.3): New variable.
* gnu/packages/patches/libarchive-CVE-2018-1000877.patch,
gnu/packages/patches/libarchive-CVE-2018-1000878.patch,
gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2019-01-07 05:42:34 +08:00
b7ec276e57
gnu: Add kitty.
...
* gnu/packages/terminals.scm (kitty): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-06 21:41:07 +01:00
b5f8c2c885
hydra: Compute jobs in an inferior.
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Previously we would rely on auto-compilation of all the Guix modules.
The complete evaluation would take ~15mn on berlin.guixsd.org and
require lots of RAM. This approach should be faster since potentially
only part of the modules are rebuilt. Furthermore, as a side-effect, it
builds the derivations that 'guix pull' uses.
* build-aux/hydra/gnu-system.scm: Remove 'eval-when' form.
(hydra-jobs): New procedure.
* gnu/ci.scm (package->alist, qemu-jobs, system-test-jobs)
(tarball-jobs): Return strings for the 'license' field.
* guix/self.scm (compiled-guix)[*cli-modules*]: Add (gnu ci).
2019-01-06 21:41:07 +01:00
65ff85dcee
hydra: evaluate: Add the checkout to the store.
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* build-aux/hydra/evaluate.scm <top level>: Add call to 'add-to-store'.
Use that as the 'file-name' attribute. Call 'primitive-load' in a
directory excursion to SOURCE.
2019-01-06 21:41:07 +01:00
59fb5c1cdb
hydra: Move job definitions to (gnu ci).
...
* build-aux/hydra/gnu-system.scm: Move code to...
* gnu/ci.scm: ... here. New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-01-06 21:41:07 +01:00
afb82831fa
build-self: Don't clobber the output port.
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The newline is meant to follow the spinner's traces so it must go to the
error port as well.
* build-aux/build-self.scm (build): Send newline to the error port.
2019-01-06 21:41:07 +01:00
0f763db448
gnu: gama: Update to 2.02.
...
* gnu/packages/gps.scm (gama): Update to 2.02.
2019-01-06 15:42:06 +02:00
644353d80d
gnu: moe: Update to 1.10.
...
* gnu/packages/moe.scm (moe): Update to 1.10.
[license]: Fix license, gpl2+.
2019-01-06 15:42:06 +02:00
Ricardo Wurmus