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13332 Commits

Author SHA1 Message Date
Ricardo Wurmus 0e6ee10c07
gnu: libmtp: Update to 1.1.11. 
* gnu/packages/patches/libmtp-devices.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
 2016-07-10 18:02:04 +02:00
Ben Woodcroft 7f575d3e56
gnu: diamond: Update to 0.8.12. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
 2016-07-10 22:32:57 +10:00
Alex Griffin 0e74bb5bd6
gnu: Add gnome-mpv. 
* gnu/packages/video.scm (gnome-mpv): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-10 07:11:08 +03:00
Alex Griffin 6cf83e3f83
gnu: mpv: Enable shared library support. 
* gnu/packages/video.scm (mpv): Enable shared library support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-10 07:10:55 +03:00
Efraim Flashner 9d5448f35f
gnu: ccache: Update to 3.2.5. 
* gnu/packages/ccache.scm (ccache): Update to 3.2.5.
[native-inputs]: Add which.
 2016-07-10 06:48:27 +03:00
Efraim Flashner e9fd10a83b
gnu: ldb: Update to 1.1.26. 
* gnu/packages/samba.scm (ldb): Update to 1.1.26.
 2016-07-10 06:48:27 +03:00
Efraim Flashner ea26457dad
gnu: tevent: Update to 0.9.28. 
* gnu/packages/samba.scm (tevent): Update to 0.9.28.
 2016-07-10 06:48:27 +03:00
Efraim Flashner 67e7452dda
gnu: talloc: Update to 2.1.7. 
* gnu/packages/samba.scm (talloc): Update to 2.1.7.
 2016-07-10 06:48:27 +03:00
Efraim Flashner 8b21d22d6a
gnu: samba: Update to 4.3.11 [fixes CVE-2016-2119]. 
* gnu/packages/samba.scm (samba): Update to 4.3.11.
 2016-07-10 06:48:27 +03:00
Leo Famulari 1a6d3d2df7
gnu: dropbear: Update to 2016.73. 
* gnu/packages/ssh.scm (dropbear): Update to 2016.73.
 2016-07-09 19:38:36 -04:00
Danny Milosavljevic a502dfbf4c
gnu: Add python-jedi. 
* gnu/packages/python.scm (python-jedi, python2-jedi): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-09 14:12:14 -04:00
Ben Woodcroft ec2a67de88
gnu: Add python-dendropy. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-09 08:00:34 +10:00
Ben Woodcroft c11f79a49e
gnu: star: Restrict supported systems to 64-bit systems. 
* gnu/packages/bioinformatics.scm (star)[supported-systems]: Restrict to
x86_64-linux and mips64el-linux.
 2016-07-08 22:10:05 +10:00
Leo Famulari 71ca053928
gnu: rxvt-unicode: Update to 9.22. 
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.22.
 2016-07-07 20:46:29 -04:00
ng0 6c12abbdb2
services: nginx: Fix typo. 
* gnu/services/web.scm (nginx-service): Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-07 20:42:58 -04:00
John J. Foerch 614023981a
gnu: Add di. 
* gnu/packages/admin.scm (di): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-07 20:38:49 -04:00
Efraim Flashner 1a5fd02a82
gnu: getmail: Update to 4.49.0. 
* gnu/packages/mail.scm (getmail): Update to 4.49.0.
 2016-07-07 20:02:11 +03:00
Efraim Flashner a0b15f5eef
gnu: python-pyusb: Update to 1.0.0. 
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.0.
 2016-07-07 19:59:25 +03:00
Efraim Flashner 6b810897a0
gnu: python-websocket-client: Update to 0.37.0. 
* gnu/packages/python.scm (python-websocket-client): Update to 0.37.0.
[source]: Use pypi uri format.
 2016-07-07 19:44:11 +03:00
Efraim Flashner 697e86ddca
gnu: ansible: Update to 2.1.0.0. 
* gnu/packages/admin.scm (ansible): Update to 2.1.0.0.
[source]: Use pypi format.
 2016-07-07 18:59:28 +03:00
Efraim Flashner 88535a4453
gnu: python-psutil: Update to 4.3.0. 
* gnu/packages/python.scm (python-psutil): Update to 4.3.0.
[home-page]: Update home-page.
 2016-07-07 17:38:20 +03:00
Ben Woodcroft d285657eae
gnu: bedtools: Update to 2.26.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
 2016-07-07 23:27:19 +10:00
Ben Woodcroft 7c7643a7f0
gnu: diamond: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
 2016-07-07 18:21:10 +08:00
Efraim Flashner 0b166a7559
gnu: quassel: Build with modular qt. 
* gnu/packages/irc.scm (quassel)[inputs]: Remove qt, add qtbase,
qttools, qtscript.
[arguments]: Disable webkit.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 5f2074ca66
gnu: snorenotify: Build with modular qt. 
* gnu/packages/kde.scm (snorenotify)[inputs]: Remove qt, add qtbase, qttools.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 05b9c00e59
gnu: qca: Build with qtbase. 
* gnu/packages/kde.scm (qca)[inputs]: Remove qt, add qtbase.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 4742c4decc
gnu: Add qtscript. 
* gnu/packages/qt.scm (qtscript): New variable.
 2016-07-07 12:23:39 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc. 
* gnu/packages/statistics.scm (r-domc): New variable.
 2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper. 
* gnu/packages/statistics.scm (r-multitaper): New variable.
 2016-07-07 10:46:30 +02:00
Ricardo Wurmus 274da826f9
gnu: Add r-seqinr. 
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
 2016-07-07 10:46:17 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4. 
* gnu/packages/statistics.scm (r-ade4): New variable.
 2016-07-07 10:46:05 +02:00
Efraim Flashner 939cf41c3f
gnu: python-oslosphinx: Update to 4.3.0. 
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.3.0.
 2016-07-07 06:54:06 +03:00
Efraim Flashner 8157af2e09
gnu: khmer: Limit to x86_64 systems only. 
* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
 2016-07-07 06:33:28 +03:00
Leo Famulari 25a814ceab
gnu: httpd: Update to 2.4.23. 
Fixes CVE-2016-4979.

* gnu/packages/web.scm (httpd): Update to 2.4.23.
 2016-07-06 14:37:46 -04:00
Efraim Flashner 15ca556bbc
gnu: pumpa: Remove extra input. 
* gnu/packages/pumpio.scm (pumpa)[inputs]: Remove qjson.
 2016-07-06 21:22:36 +03:00
Roel Janssen 8f82641ac9
gnu: Add emacs-hl-todo. 
* gnu/packages/emacs.scm (emacs-hl-todo): New variable.
 2016-07-06 19:02:13 +02:00
Roel Janssen 41184943ae
gnu: Add emacs-ess. 
* gnu/packages/emacs.scm (emacs-ess): New variable.
 2016-07-06 13:25:50 +02:00
Ricardo Wurmus 26112c0abb
gnu: python-numexpr: Update to 2.6.0. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.0.
 2016-07-06 12:02:18 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite. 
* gnu/packages/statistics.scm (r-svglite): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools. 
* gnu/packages/statistics.scm (r-gdtools): New variable.
 2016-07-06 15:17:29 +08:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-06 07:28:09 +03:00
Efraim Flashner fda746b198
gnu: menu-cache: Update to 1.0.1. 
* gnu/packages/lxde.scm (menu-cache): Update to 1.0.1.
 2016-07-05 22:36:13 +03:00
Efraim Flashner d78c952dfd
gnu: lxtask: Update to 0.1.7. 
* gnu/packages/lxde.scm (lxtask): Update to 0.1.7.
 2016-07-05 22:33:20 +03:00
Efraim Flashner d7ec759a7a
gnu: lxrandr: Update to 0.3.1. 
* gnu/packages/lxde.scm (lxrandr): Update to 0.3.1.
 2016-07-05 22:30:38 +03:00
Efraim Flashner 2c2a9ef79e
gnu: lxappearance: Update to 0.6.2. 
* gnu/packages/lxde.scm (lxappearance): Update to 0.6.2.
 2016-07-05 22:27:11 +03:00
Ricardo Wurmus 5fb5dffbd4
gnu: Add multiqc. 
* gnu/packages/bioinformatics.scm (multiqc): New variable.
 2016-07-05 16:32:37 +02:00
Roel Janssen 091963c69b
gnu: Add perltidy. 
* gnu/packages/perl.scm (perltidy): New variable.
 2016-07-05 16:12:23 +02:00
Ricardo Wurmus 1f1b20b8be
gnu: Add bits. 
* gnu/packages/bioinformatics.scm (bits): New variable.
 2016-07-05 15:43:36 +02:00
Ricardo Wurmus 66e40e0065
gnu: Add EMBOSS. 
* gnu/packages/bioinformatics.scm (emboss): New variable.
 2016-07-05 12:32:12 +02:00