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13290 Commits

Author SHA1 Message Date
Ricardo Wurmus c90a4baff6 gnu: Add r-bsgenome-hsapiens-ucsc-hg19. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19): New
  variable.
 2016-04-11 11:03:27 +02:00
Ricardo Wurmus 936e7d6774 gnu: Add r-seqlogo. 
* gnu/packages/bioinformatics.scm (r-seqlogo): New variable.
 2016-04-11 11:03:27 +02:00
Leo Famulari ce8eeaf7a4 gnu: borg: Update to 1.0.1. 
* gnu/packages/backup.scm (borg): Update to 1.0.1.
 2016-04-11 01:38:38 -04:00
Leo Famulari d87fd79953 gnu: vdirsyncer: Update to 0.9.3. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.3.
 2016-04-10 22:31:32 -04:00
Efraim Flashner 4b47cbfa9a gnu: python-werkzeug: Update to 0.11.5. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.5.
 2016-04-10 23:36:58 +03:00
Efraim Flashner 9ba40f05c8 gnu: python-pytest-localserver: Change inputs. 
* gnu/packages/python.scm (python-pytest-localserver)[native-inputs]:
Remove zip.
[proapgated-inputs]: Move python-werkzeug ...
[inputs]: ... to here.
[propagated-inputs]: Move python-pytest, python-requests, python-six ...
[native-inputs]: ... to here.
 2016-04-10 22:45:53 +03:00
Efraim Flashner 630d938fbe gnu: python-pytest-cache: Change inputs. 
* gnu/packages/python.scm (python-pytest-cache)[propagated-inputs]: Move
python-execnet ...
[inputs]: ... to here. Add python-apipkg, python-py, python-pytest.
 2016-04-10 22:38:44 +03:00
Efraim Flashner 584d068f0f gnu: python-execnet: Change inputs. 
* gnu/packages/python.scm (python-execnet)[propagated-inputs]: Move
python-apipkg ...
[inputs]: ... to here.
 2016-04-10 22:32:39 +03:00
Efraim Flashner b43bab3c2a gnu: python-apipkg: Change inputs. 
* gnu/packages/python.scm (python-apipkg)[native-inputs]: Move
python-pytest.
[inputs]: ... to here.
 2016-04-10 22:30:19 +03:00
Efraim Flashner fbe9abcce4 gnu: python-pytest-xdist: Change inputs. 
* gnu/packages/python.scm (python-pytest-xdist)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Move python-execnet, python-py, python-pytest ...
[inputs]: ... to here. Add python-apipkg.
[properties]: Define python2-pytest-xdist.
(python2-pytest-xdist): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 22:07:45 +03:00
Efraim Flashner 54cd239b35 gnu: python-pytest-runner: Define python2-pytest-runner. 
* gnu/packages/python.scm (python-pytest-runner)[properties]: Define
python2-pytest-runner.
[native-inputs]: Remove python-setuptools.
[home-page]: Project has moved to Github.
(python2-pytest-runner)[native-inputs]: Add python2-setuptools.
 2016-04-10 21:17:10 +03:00
Efraim Flashner 545f4a1c3c gnu: python-pytest-cov: Update to 2.2.1. 
* gnu/packages/python.scm (python-pytest-cov): Update to 2.2.1.
[native-inputs]: Remove python-setuptools. Move python-coverage,
python-pytest ...
[inputs]: ... to here.
[properties]: Define python2-pytest-cov.
(python-pytest-cov): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 21:00:42 +03:00
Efraim Flashner eb3d3503f3 gnu: python-parse: Update to 1.6.6. 
* gnu/packages/python.scm (python-parse): Update to 1.6.6.
 2016-04-10 20:52:04 +03:00
Efraim Flashner ed80839b8c gnu: python-tzlocal: Update to 1.2.2. 
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.2.
[native-inputs]: Move python-pytz ...
[inputs]: ... to here.
 2016-04-10 20:45:49 +03:00
Efraim Flashner eebf6f01e4 gnu: python-parsedatetime: Update to 2.1. 
* gnu/packages/python.scm (parsedatetime): Update to 2.1.
[native-inputs]: Remove python-setuptools, add python-nose, python-pyicu.
[properties]: Define python2-variant.
(python2-parsedatetime): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 20:07:57 +03:00
Efraim Flashner 394b8060b1 gnu: python-dateutil-2: Update to 2.5.2. 
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.2.
[inputs]: Remove python-setuptools.
[properties]: Define python2-dateutil-2.
(python2-dateutil-2): Build with 'strip-python2-variant'.
[inputs]: Add python2-setuptools.
 2016-04-10 19:43:27 +03:00
Efraim Flashner 13f3ff3522 gnu: python-keyring: Update to 8.7. 
* gnu/packages/python.scm (python-keyring): Update to 8.7.
[native-inputs]: Remove python-setuptools, python-mock.
[properties]: Define python2-keyring.
(python2-keyring): Build with 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
 2016-04-10 18:02:32 +03:00
Efraim Flashner fe147c4143 gnu: python-h5py: Update to 2.6.0. 
* gnu/packages/python.scm (python-h5py): Update to 2.6.0.
[inputs]: Add python-six.
[native-inputs]: Add python-pkgconfig.
[properties]: Define python2-h5py.
 2016-04-10 17:12:31 +03:00
Efraim Flashner 61c9babb6e gnu: python-pytz: Update to 2016.3. 
* gnu/packages/python.scm (python-pytz): Update to 2016.3.
 2016-04-10 12:43:42 +03:00
Efraim Flashner 3f37db6b0e gnu: python-babel: Update to 2.3.2. 
* gnu/packages/python.scm (python-babel): Update to 2.3.2.
 2016-04-10 12:21:51 +03:00
Efraim Flashner db5567f753 gnu: python-ccm: Update to 2.1.6. 
* gnu/packages/python.scm (python-ccm): Update to 2.1.6.
 2016-04-10 12:16:44 +03:00
Efraim Flashner 286f1bac9e gnu: python-httplib2: Update to 0.9.2. 
* gnu/packages/python.scm (python-httplib2): Update to 0.9.2.
 2016-04-10 12:13:02 +03:00
Efraim Flashner 81b9bbbd57 gnu: python-paramiko: Update to 1.16.0. 
* gnu/packages/python.scm (python-paramiko): Update to 1.16.0.
 2016-04-10 11:57:11 +03:00
Efraim Flashner 623cd1ab18 gnu: youtube-dl: Update to 2016.04.06. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.04.06.
[native-inputs]: Remove python-setuptools.
 2016-04-10 11:17:55 +03:00
Efraim Flashner 6a308947b4 gnu: python-requests: Rearrange inputs. 
* gnu/packages/python.scm (python-requests)[propagated-inputs]: Move
python-py, python-pytest, python-pytest-cov, python-wheel from here...
[native-inputs]: ... to here.
 2016-04-10 10:55:28 +03:00
Efraim Flashner 5b9fe59fbe gnu: livestreamer: Remove extra inputs. 
* gnu/packages/video.scm (livestreamer)[native-inputs]: Remove
python-setuptools.
[propagated-inputs]: Remove python-singledispatch.
 2016-04-10 10:33:59 +03:00
Efraim Flashner 42aa73b337 gnu: offlineimap: Add sqlite support. 
* gnu/packages/mail.scm (offlineimap)[inputs]: Add python2-pysqlite.
[arguments]: Wrap binary with python2-pysqlite's path.
 2016-04-10 09:01:00 +03:00
Efraim Flashner 58e87f66ce gnu: icecat: Update to 38.7.1-gnu1. 
* gnu/packages/gnuzilla.scm (icecat): Update to 38.7.1-gnu1.
[sources]: Remove numerous patches.
* gnu/packages/patches/icecat-CVE-2015-4477.patch,
gnu/packages/patches/icecat-CVE-2015-7207.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt01.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt02.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt03.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt04.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt05.patch,
gnu/packages/patches/icecat-CVE-2016-1952-pt06.patch,
gnu/packages/patches/icecat-CVE-2016-1954.patch,
gnu/packages/patches/icecat-CVE-2016-1960.patch,
gnu/packages/patches/icecat-CVE-2016-1961.patch,
gnu/packages/patches/icecat-CVE-2016-1962.patch,
gnu/packages/patches/icecat-CVE-2016-1964.patch,
gnu/packages/patches/icecat-CVE-2016-1965.patch,
gnu/packages/patches/icecat-CVE-2016-1966.patch,
gnu/packages/patches/icecat-CVE-2016-1974.patch,
gnu/packages/patches/icecat-icecatbug-1248851.patch,
gnu/packages/patches/icecat-update-graphite2.patch,
gnu/packages/patches/icecat-update-graphite2-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
 2016-04-10 08:40:42 +03:00
John Darrington 9c45c51992 gnu: Add c-graph. 
* gnu/packages/maths.scm (c-graph): New variable.
 2016-04-09 09:16:48 +02:00
Chris Marusich 1c6ae41875 gnu: Add ibus-anthy. 
* gnu/packages/ibus.scm (ibus-anthy): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>.
 2016-04-09 09:36:29 +08:00
Chris Marusich 4862910d0a gnu: Add anthy. 
* gnu/packages/anthy.scm: New file.
* gnu-system.am: Add it.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-09 09:34:05 +08:00
Kei Yamashita 2331e5e860 gnu: Add wmclock. 
* gnu/packages/gnustep.scm (wmclock): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-04-08 17:50:10 +03:00
McKinley Olsen 1ccc3da8d2 gnu: pcre2: Update to 10.21. 
gnu/packages/pcre.scm (pcre2): Update to 10.21.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-04-08 19:28:47 +08:00
Andreas Enge 7d4c6ee878 gnu: singular: Update hash. 
* gnu/packages/algebra.scm (singular)[source]: Update upstream hash. See
  http://www.singular.uni-kl.de:8002/trac/ticket/754 .
 2016-04-08 11:17:46 +02:00
Mark H Weaver 1a9f5e9ff3 gnu: linux-libre-4.1: Update to 4.1.21. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.21.
 2016-04-07 21:20:28 -04:00
David Thompson 4da5fe6f88 gnu: redis: Update to 3.0.7. 
* gnu/packages/databases.scm (redis): Update to 3.0.7.
 2016-04-07 16:44:04 -04:00
Mathieu Lirzin a0c6a36b28 gnu: python-pkgconfig: Add license prefix. 
* gnu/packages/python.scm (python-pkgconfig)[license]: Fix prefix.
 2016-04-07 20:12:14 +02:00
John Darrington c791efde74 gnu: Add macchanger. 
* gnu/packages/networking.scm (macchanger): New variable.
 2016-04-07 19:12:28 +02:00
David Thompson c5b5e275a7 gnu: node: Update to 5.10.0. 
* gnu/packages/node.scm (node): Update to 5.10.0.
 2016-04-07 11:52:02 -04:00
David Thompson 73b8714fb1 gnu: libuv: Update to 1.8.0. 
* gnu/packages/libevent.scm (libuv): Update to 1.8.0.
 2016-04-07 11:52:02 -04:00
David Thompson fe463dbcf7 environment: container: Work around read-only /etc/resolv.conf issue. 
* guix/scripts/environment.scm (launch-environment/container): Mount
/etc/resolv.conf as a writable file.
 2016-04-07 11:48:31 -04:00
Efraim Flashner 5eabbc3e90 gnu: abiword: Add epub, goffice support. 
* gnu/packages/abiword.scm (abiword.scm)[arguments]: Add "epub" and
"goffice" to "enable-plugins" configure flag.
[inputs]: Add goffice, libchamplain, telepathy-glib.
 2016-04-07 11:02:52 +03:00
Andreas Enge 435a0462be gnu: python-cython: Update to 0.24. 
* gnu/packages/python.scm (python-cython): Update to 0.24.
 2016-04-07 00:45:08 +02:00
Andreas Enge 8e45188525 gnu: Add python-cysignals. 
* gnu/packages/python.scm (python-cysignals, python2-cysignals): New
  variables.
 2016-04-07 00:45:08 +02:00
Roel Janssen 9e3ba31c53 gnu: Add r-zlibbioc. 
* gnu/packages/bioinformatics.scm (r-zlibbioc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Roel Janssen b669d9c4c8 gnu: Add r-variantannotation. 
* gnu/packages/bioinformatics.scm (r-variantannotation): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-04-06 17:38:42 -04:00
Ludovic Courtès a7681d29dc gnu: pcre: Fix CVE-2016-3191. 
* gnu/packages/pcre.scm (pcre)[replacement]: New field.
(pcre-fixed): New variable.
* gnu/packages/patches/pcre-CVE-2016-3191.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
 2016-04-06 23:27:10 +02:00
Ludovic Courtès a70a50048b doc: Update reproducible-builds.org URL. 
* doc/guix.texi (Invoking guix challenge): Update reproducible-builds
URL.
 2016-04-06 23:23:56 +02:00
Ludovic Courtès ddbc7f7d81 doc: Use more https URLs. 
* doc/guix.texi (Invoking guix challenge): Use https instead of http.
 2016-04-06 23:22:49 +02:00
Ludovic Courtès 7cffaeb604 challenge: Really exit with non-zero upon hash mismatch. 
Reported by John Darrington.

* guix/scripts/challenge.scm (guix-challenge): Add an explicit 'exit'
call when ISSUES is empty.
* scripts/guix.in: Add comment about 'exit'.
* doc/guix.texi (Invoking guix challenge): Mention the behavior and exit
code.
 2016-04-06 23:21:26 +02:00