nixo
/
guix-devel
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity
26,096 Commits 1 Branch 0 Tags 104 MiB
Commit Graph

19924 Commits

Author SHA1 Message Date
Arun Isaac 9364a520ce
gnu: metabat: Use scons-build-system. 
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac 82cc8253de
gnu: serf: Use scons-build-system. 
* gnu/packages/web.scm (serf): Switch to scons-build-system.
 2017-11-30 18:19:32 +05:30
Arun Isaac 2235abb2a2
gnu: gpick: Use scons-build-system. 
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
 2017-11-30 18:19:31 +05:30
Arun Isaac 2b1a5ed854
gnu: linuxdcpp: Use scons-build-system. 
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
 2017-11-30 18:19:31 +05:30
Arun Isaac bf630276a1
gnu: scons: Update to 3.0.1. 
* gnu/packages/python.scm (scons): Update to 3.0.1.
(scons-python2): New variable.
 2017-11-30 18:18:47 +05:30
Mathieu Othacehe c5b2905d92
gnu: dtc: Fix build on 32 bits platforms. 
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and
  dtc-format-modifier.patch to fix build and tests on 32 bits platforms.
* gnu/packages/patches/dtc-32-bits-check.patch : New file.
* gnu/packages/patches/dtc-format-modifier.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add two above patches.
 2017-11-30 13:32:28 +01:00
Roel Janssen 8937abefb2
gnu: Update r-matrix to 1.2-12. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
 2017-11-30 12:52:25 +01:00
Roel Janssen c71558ffed
gnu: Update r-cluster to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-11-30 12:51:54 +01:00
Roel Janssen cbe1314a7e
gnu: Update r-minimal to 3.4.3. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
 2017-11-30 12:50:23 +01:00
Ludovic Courtès 8833a647bb
gnu: guix: Move 'bootstrap' phase after 'unpack'. 
Suggested by Mark H Weaver <mhw@netris.org>
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html>.

* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase back after 'unpack'.
 2017-11-30 11:14:34 +01:00
Efraim Flashner 46ff2dbb4a
gnu: grub-efi: Disable tests on all platforms. 
This is a follow-up to 56f0feb678
and 63087721bb, which accidentally
enabled tests for grub-efi on other platforms.

* gnu/packages/bootloaders.scm (grub-efi)[arguments]: Override inherited
tests field and disable on all platforms.
 2017-11-30 10:17:09 +02:00
Tobias Geerinckx-Rice 3e9013562c
gnu: exim: Update to 4.89.1. 
* gnu/packages/mail.scm (exim): Update to 4.89.1.
[source]: Remove patches for fixed CVEs (all of them).
* gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file...
* gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file...
* gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file.
* gnu/local.mk (dist_patch_DATA): Remove all of them.
 2017-11-30 02:29:09 +01:00
Ludovic Courtès 53d26163c6
gnu: libgit2: Avoid dependency on cURL. 
This reduces the closure size from 225 MiB to 80 MiB, while still
supporting HTTP(S) access.

* gnu/packages/version-control.scm (libgit2)[source](modules, snippet):
New fields.
[inputs]: Remove CURL; add HTTP-PARSER.
 2017-11-29 23:40:39 +01:00
Tobias Geerinckx-Rice 32008a75dc
gnu: spectrwm: Fix description. 
* gnu/packages/wm.scm (spectrwm)[description]: Fix typo and use @dfn.
 2017-11-29 22:03:24 +01:00
Tobias Geerinckx-Rice ead48d0523
gnu: ghc-happy: Update to 1.19.8. 
* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.8.
[arguments]: Delete; run all tests.
 2017-11-29 22:02:42 +01:00
Leo Famulari e6e8352382
gnu: curl: Update to 7.57.0 [fixes CVE-2017-{8816,8817,8818}]. 
* gnu/packages/curl.scm (curl): Update replacement to 7.57.0.
(curl-7.56.1): Replace with ...
(curl-7.57.0): ... new variable.
 2017-11-29 14:38:51 -05:00
Leo Famulari 2c646b7d52
gnu: libtorrent-rasterbar: Update to 1.1.5. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.5.
 2017-11-29 14:38:47 -05:00
Efraim Flashner 63087721bb
gnu: grub :Disable tests on aarch64. 
* gnu/packages/bootloaders.scm (grub)[arguments]: Add aarch64 to the
architectures where the test suite is not run.
 2017-11-29 20:34:29 +02:00
Tobias Geerinckx-Rice a6d06e8612
gnu: openconnect: Use only vpnc-scripts. 
* gnu/packages/vpn.scm (openconnect)[inputs, arguments]: Substitute
‘vpnc-scripts’ for ‘vpnc’
 2017-11-29 16:08:36 +01:00
Tobias Geerinckx-Rice 101e67ac20
gnu: vpnc: Use newer vpnc-scripts. 
* gnu/packages/vpn.scm (vpnc)[source]: Remove patch.
[inputs]: Remove net-tools and iproute2.  Add vpnc-scripts.
[arguments]: Delete ‘configure’ and ‘wrap-vpnc-script’ #:phases.
Add ‘use-store-paths’ phase.
* gnu/packages/patches/vpnc-script.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-29 16:08:36 +01:00
Tobias Geerinckx-Rice 06d91fd944
gnu: Add vpnc-scripts. 
* gnu/packages/vpn.scm (vpnc-scripts): New variable.
 2017-11-29 16:08:36 +01:00
Mathieu Othacehe 56f0feb678
gnu: grub: Disable tests on ARM platforms. 
* gnu/packages/bootloaders (grub): Disable tests on ARM platforms.
Half of the tests are failing on ARM.
 2017-11-29 15:00:55 +01:00
Roel Janssen 1fd904fb38
gnu: Update r-mutationalpatterns to 1.4.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
 2017-11-29 14:56:28 +01:00
Tobias Geerinckx-Rice 60c8a14b8a
gnu: ghc-tasty-rerun: Update to 1.1.7. 
* gnu/packages/haskell-check.scm (ghc-tasty-rerun): Update to 1.1.7.
 2017-11-29 13:42:06 +01:00
Tobias Geerinckx-Rice d5feb0920e
gnu: limnoria: Update to 2017.10.01. 
* gnu/packages/irc.scm (limnoria): Update to 2017.10.01.
 2017-11-29 13:38:31 +01:00
Marius Bakke b3e53aae08
gnu: libxfont@1: Update to 1.5.4 [fixes CVE-2017-16611]. 
* gnu/packages/xorg.scm (libxfont): Update to 1.5.4.
 2017-11-29 12:53:08 +01:00
Marius Bakke 1ec0b7407f
gnu: libxfont@2: Update replacement to 2.0.3 [fixes CVE-2017-16611]. 
* gnu/packages/xorg.scm (libxfont2/fixed): Rename to ...
(libxfont2-2.0.3): ... this.  Make public.
[version]: New field.
[source]: Add URI and SHA256.  Remove patches.
(libxfont2)[replacement]: Change LIBXFONT2/FIXED to LIBXFONT2-2.0.3.
* gnu/packages/patches/libxfont-CVE-2017-13720.patch,
gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2017-11-29 12:53:08 +01:00
Marius Bakke 4fc61dac3c
gnu: libxcursor: Replace with 1.1.15 [fixes CVE-2017-16612]. 
* gnu/packages/xorg.scm (libxcursor-1.1.15): New public variable.
(libxcursor)[replacement]: New field.
 2017-11-29 12:53:08 +01:00
Marius Bakke 0e7fb0cd9b
gnu: optipng: Fix CVE-2017-1000229. 
* gnu/packages/image.scm (optipng)[source](patches): New field.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-11-29 12:53:08 +01:00
Roel Janssen efa6a1ddb5
gnu: Add r-copynumber. 
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
 2017-11-29 12:46:17 +01:00
Roel Janssen 94989d4bae
gnu: cran: Add r-rmpi. 
* gnu/packages/cran.scm (r-rmpi): New variable.
 2017-11-29 12:15:33 +01:00
Leo Famulari 3519f2841d
gnu: libtorrent-rasterbar: Update to 1.1.4. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.4.
[source]: Remove 'libtorrent-rasterbar-boost-compat.patch'.
* gnu/packages/patches/libtorrent-rasterbar-boost-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-11-29 01:12:18 -05:00
Ben Sturmfels d2bdee8a69
gnu: synergy: Fix install test/install error. 
* gnu/packages/synergy.scm (synergy)[arguments]: Adjust the build directory in
accordance with the package's new upstream name.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 18:26:20 -05:00
Leo Famulari 48adc61c14
gnu: exim: Fix CVE-2017-16944. 
* gnu/packages/patches/exim-CVE-2017-16944.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/mail.scm (exim)[source]: Use it.
 2017-11-28 18:22:49 -05:00
Leo Famulari 38faa2b546
gnu: qemu: Fix CVE-2017-{15118,15119}. 
* gnu/packages/patches/qemu-CVE-2017-15118.patch,
gnu/packages/patches/qemu-CVE-2017-15119.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/virtualization.scm (qemu)[source]: Use them.
 2017-11-28 18:16:22 -05:00
ng0 20d2c6e749
gnu: Add nototools. 
* gnu/packages/fontutils.scm (nototools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:55:13 -05:00
ng0 3715aff59b
gnu: Add python2-defcon. 
* gnu/packages/fontutils.scm (python2-defcon): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:52:58 -05:00
ng0 76040f71f1
gnu: Add python2-booleanoperations. 
* gnu/packages/python.scm (python2-booleanoperations): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:51:45 -05:00
ng0 a39211febd
gnu: Add python-pyclipper. 
* gnu/packages/python.scm (python-pyclipper, python2-pyclipper): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:49:08 -05:00
ng0 9b3c7520eb
gnu: Add python-setuptools-scm-git-archive. 
* gnu/packages/python.scm (python-setuptools-scm-git-archive,
python2-setuptools-scm-git-archive): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:49:07 -05:00
ng0 427a51fd8f
gnu: Add python2-ufolib. 
* gnu/packages/fontutils.scm (python2-ufolib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:40:43 -05:00
ng0 0ee27df06b
gnu: add font-fira-sans. 
* gnu/packages/fonts.scm (font-fira-sans): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:26:20 -05:00
ng0 4eb4742060
gnu: Add font-lato. 
* gnu/packages/fonts.scm (font-lato): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:22:28 -05:00
ng0 27a1077580
gnu: Add font-dosis. 
* gnu/packages/fonts.scm (font-dosis): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 14:18:25 -05:00
Leo Famulari 4440e40c6a
gnu: zsh: Update to 5.4.2. 
* gnu/packages/shells.scm (zsh): Update to 5.4.2.
[arguments]: Add a 'patch-test' build phase.
 2017-11-28 13:52:36 -05:00
Rutger Helling fbf5ca3c5e
gnu: libressl: Update to 2.6.3. 
* gnu/packages/tls.scm (libressl): Update to 2.6.3.
 2017-11-28 13:50:04 -05:00
Rutger Helling 142535c3c2
gnu: you-get: Update to 0.4.985. 
* gnu/packages/video.scm (you-get): Update to 0.4.985.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-28 13:50:03 -05:00
Oleg Pykhalov 2cdf78df2d
gnu: python-internetarchive: Enable tests. 
* gnu/packages/web.scm (python-internetarchive): Enable tests.
 2017-11-28 20:23:46 +03:00
Oleg Pykhalov 25fa22a99b
gnu: python-internetarchive: Update to 1.7.4. 
* gnu/packages/web.scm (python-internetarchive): Update to 1.7.4.
 2017-11-28 20:23:46 +03:00
Ludovic Courtès e463a94ce7
gnu: guix: Update snapshot to 0a154c1. 
* gnu/packages/package-management.scm (guix): Update to commit 0a154c1.
 2017-11-28 18:17:45 +01:00
Oleg Pykhalov a6d02fc168
gnu: Add eless. 
* gnu/packages/emacs.scm (eless): New variable.
 2017-11-28 20:13:48 +03:00
Kei Kebreau 07f3b3794c
gnu: Add roguebox-adventures. 
* gnu/packages/games.scm (roguebox-adventures): New variable.
 2017-11-28 09:54:13 -05:00
Ludovic Courtès 1da3d2a3a1
gnu: perl-markdown-discount: Use a shorter patch file name. 
* gnu/packages/patches/perl-text-markdown-discount-use-system-markdown.patch:
Rename to...
* gnu/packages/patches/perl-text-markdown-discount-unbundle.patch:
... this.
* gnu/packages/markup.scm (perl-text-markdown-discount): Adjust accordingly.
 2017-11-28 14:57:16 +01:00
Ludovic Courtès dd1640eed6
gnu: guix: Add guile-bytestructures to the search path. 
* gnu/packages/package-management.scm (guix)[arguments]: In
'wrap-program' phase, add guile-bytestructures to the path.
 2017-11-28 13:29:47 +01:00
Ludovic Courtès 91c619ebdf
gnu: guix: Provide the correct version string. 
Fixes <https://bugs.gnu.org/29429>.
Reported by Arun Isaac <arunisaac@systemreboot.net>.

* gnu/packages/package-management.scm (guix)[arguments]: Move
'bootstrap' phase before 'configure'.  Create '.tarball-version' file.
 2017-11-28 13:25:04 +01:00
Brendan Tildesley 04c3573726
gnu: xdg-utils: Add perl-file-mimeinfo as an input. 
* gnu/packages/freedesktop.scm (perl-file-mimeinfo)
[input]: Add perl-file-mimeinfo.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-28 10:41:22 +01:00
Brendan Tildesley d0ce96bc17
gnu: Add perl-file-mimeinfo. 
* gnu/packages/freedesktop.scm (perl-file-mimeinfo): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-28 10:40:45 +01:00
Brendan Tildesley 825cebdb33
gnu: Add perl-file-desktopentry. 
* gnu/packages/freedesktop.scm (perl-file-desktopentry): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-28 10:35:29 +01:00
Brendan Tildesley b32596ecfc
gnu: Add perl-file-basedir. 
* gnu/packages/freedesktop.scm: (perl-file-basedir): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-28 10:33:59 +01:00
Mike Gerwitz 797d238789
gnu: node: Update to 8.9.1. 
* gnu/packages/node.scm (node): Update to 8.9.1.
[source]: Apply 'node-test-http2-server-rst-stream.patch'.
[arguments]: Skip 'doc-only' target in 'check', which attempts to use
npm to retrieve 'js-yaml' package.  Remove test/doctool/test-make-doc.js.
Do not remove now-missing test case.  Remove new test case that fails in
containers due to networking.
* gnu/packages/patches/node-test-http2-server-rst-stream.patch: New file.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-28 10:04:26 +01:00
Efraim Flashner ff6dcc1ae9
gnu: libmicrohttpd: Update to 0.9.57. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.57.
[description]: Fix line breaks.
 2017-11-28 09:38:27 +02:00
Efraim Flashner 62028e9125
gnu: nano: Update to 2.9.1. 
* gnu/packages/nano.scm (nano): Update to 2.9.1.
 2017-11-28 09:38:24 +02:00
Clément Lassieur 769e715508
gnu: emacs-org-contrib: Fix sha256 checksum due to emacs-org update. 
* gnu/packages/emacs.scm (emacs-org-contrib)[source]: Fix sha256 checksum.
 2017-11-28 03:49:47 +01:00
Clément Lassieur 149b2c439e
gnu: lua-lpeg: Avoid code repetition. 
* gnu/packages/lua.scm (make-lua-lpeg): New procedure.
(lua-lpeg, lua5.2-lpeg): Call make-lua-lpeg.
 2017-11-28 03:49:47 +01:00
ng0 1aace3dc34
gnu: gnurl: Update to 7.56.1-2. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1-2.
[arguments]: Adjust the #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-27 15:49:17 -05:00
Efraim Flashner aad2dbfb6c
gnu: Add vim-fugitive. 
* gnu/packages/vim.scm (vim-fugitive): New variable.
 2017-11-27 22:26:17 +02:00
Efraim Flashner b200ecdeb2
gnu: Add gama. 
* gnu/packages/gps.scm (gama): New variable.
 2017-11-27 22:18:27 +02:00
Christopher Baines 03800de180
gnu: Patch udisks to directly reference cryptsetup and parted. 
This fixes some functionality in gnome-disks, which uses udisks. Adding
cryptsetup enables creating partitions using LUKS, and adding parted enables
editing the partition tables through the disks application.

* gnu/packages/freedesktop.scm (udisks)[inputs]: Add cryptsetup and parted.
  (arguments): Rename set-mount-file-name phase, and add cryptsetup and
  parted.
 2017-11-27 19:41:17 +00:00
Leo Famulari 080e023d45
gnu: openntpd: Enable use of TLS-based time constraints. 
* gnu/packages/ntp.scm (openntpd)[inputs]: Add libressl.
 2017-11-27 13:29:18 -05:00
Vasile Dumitrascu 12a130b011
gnu: monero-core: Update to 0.11.1.0. 
* gnu/packages/finance.scm (monero-core): Update to 0.11.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-27 12:56:36 -05:00
Vasile Dumitrascu 14e09e9039
gnu: monero: Update to 0.11.1.0. 
* gnu/packages/finance.scm (monero): Update to 0.11.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-11-27 12:56:33 -05:00
Tobias Geerinckx-Rice 7832785def
gnu: steghide: Fix description. 
* gnu/packages/image.scm (steghide)[description]: Remove typos and improve
grammar.
 2017-11-27 17:07:12 +01:00
Tobias Geerinckx-Rice 778c4a2fa1
gnu: rhythmbox: Update to 3.4.2. 
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.2.
 2017-11-27 17:06:26 +01:00
Tobias Geerinckx-Rice 47aba9ddc9
gnu: libgweather: Update to 3.26.1. 
* gnu/packages/gnome.scm (libgweather): Update to 3.26.1.
 2017-11-27 17:06:25 +01:00
Tobias Geerinckx-Rice ac25f5972d
gnu: glade@3: Update to 3.20.2. 
* gnu/packages/gnome.scm (glade3): Update to 3.20.2.
 2017-11-27 17:06:25 +01:00
Tobias Geerinckx-Rice 26ff9cb370
gnu: libzip: Run all tests. 
* gnu/packages/compression.scm (libzip)[arguments]: Delete
‘remove-failing-stest’ phase.
 2017-11-27 16:16:20 +01:00
Tobias Geerinckx-Rice 18533bcf2d
gnu: borg: Use new borgbackup.org home page. 
* gnu/packages/backup.scm (borg)[home-page]: Update.
 2017-11-27 14:12:25 +01:00
Tobias Geerinckx-Rice b46ea394a4
gnu: python-prompt-toolkit: Update to 1.0.15. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.15.
 2017-11-27 14:12:25 +01:00
Tobias Geerinckx-Rice 8fab029dbc
gnu: python-pyicu: Update home page. 
* gnu/packages/python.scm (python-pyicu)[home-page]: Update.
 2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice d152d9338f
gnu: python-pyicu: Update to 1.9.8. 
* gnu/packages/python.scm (python-pyicu): Update to 1.9.8.
[arguments]: Delete.
[native-inputs]: Add python-pytest and python-six.
 2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice 36c5cf758c
gnu: rapicorn: Update home page. 
* gnu/packages/graphics.scm (rapicorn)[home-page]: Use extant domain.
 2017-11-27 14:12:24 +01:00
Tobias Geerinckx-Rice 5f169014ec
gnu: borg: Update to 1.1.3 [fixes CVE-2017-15914]. 
* gnu/packages/backup.scm (borg): Update to 1.1.3.
[arguments]: Skip ‘test_mount_hardlinks’ test.
 2017-11-27 14:12:23 +01:00
Tobias Geerinckx-Rice 216614a4b3
gnu: youtube-dl: Update to 2017.11.26. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.11.26.
 2017-11-27 14:12:23 +01:00
Ludovic Courtès e8374e6912
gnu: guile-wisp: Move .go files to 'lib/guile/2.2/site-ccache'. 
* gnu/packages/guile.scm (guile-wisp)[arguments]: Remove (system base
compile) from #:modules, and (ice-9 rdelim) and (ice-9 popen).
In 'install-go-files' phase, invoke 'guild' to compile, and write to
lib/guile/X.Y/site-ccache.
 2017-11-27 14:06:27 +01:00
Ludovic Courtès 89c4bfe7f8
gnu: guile-wisp: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-wisp)[inputs]: Use GUILE-2.2 instead of
GUILE-2.0.
 2017-11-27 14:05:58 +01:00
Ludovic Courtès e084090554
gnu: guile-wisp: Update to 0.9.8. 
* gnu/packages/guile.scm (guile-wisp): Update to 0.9.8.
[inputs]: Remove PYTHON.
[native-inputs]: New field.
[arguments]: Keep 'install' phase.  Add 'install-go-files' phase.
Adjust 'substitute-before-config' phase.
 2017-11-27 14:05:58 +01:00
Ricardo Wurmus 776d2fb1bf
gnu: Add java-jbzip2. 
* gnu/packages/compression.scm (java-jbzip2): New variable.
 2017-11-27 12:12:41 +01:00
Ricardo Wurmus d7f24778de
gnu: Add java-picard-1.113. 
* gnu/packages/bioinformatics.scm (java-picard-1.113): New variable.
 2017-11-27 12:12:41 +01:00
Ricardo Wurmus fa6c4213c6
gnu: Add ant-junit. 
* gnu/packages/java.scm (ant-junit): New variable.
 2017-11-27 12:12:41 +01:00
Ricardo Wurmus 9ce7ac992e
gnu: Add ant-apache-bcel. 
* gnu/packages/java.scm (ant-apache-bcel): New variable.
 2017-11-27 12:12:41 +01:00
Ricardo Wurmus 5e3abfc83f
gnu: Add java-commons-bcel. 
* gnu/packages/java.scm (java-commons-bcel): New variable.
 2017-11-27 12:12:41 +01:00
Ricardo Wurmus c5ff11dcc1
gnu: Add java-cofoja. 
* gnu/packages/java.scm (java-cofoja): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus d7fed31ad2
gnu: Add java-picard. 
* gnu/packages/bioinformatics.scm (java-picard): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus bd94b6f850
gnu: java-htsjdk: Update to 2.3.0. 
* gnu/packages/bioinformatics.scm (java-htsjdk): Update to 2.3.0.
[arguments]: Build with JDK 8.
[inputs]: Add java-ngs, java-snappy, java-commons-compress,
java-commons-logging-minimal, java-commons-jexl-2, and java-xz.
[native-inputs]: Add java-testng.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus 9e325e8c05
gnu: Add java-commons-jexl-2. 
* gnu/packages/java.scm (java-commons-jexl-2): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus 6688c41e16
gnu: Add javacc-4. 
* gnu/packages/java.scm (javacc-4): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus fc8d100b24
gnu: Add javacc. 
* gnu/packages/java.scm (javacc): New variable.
 2017-11-27 12:12:40 +01:00
Ricardo Wurmus 933ad809f1
gnu: Add java-snappy-1. 
* gnu/packages/compression.scm (java-snappy-1): New variable.
 2017-11-27 12:12:39 +01:00
Ricardo Wurmus 9cc51d16cb
gnu: librecad: Ensure that icons are found at runtime. 
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"wrap-executable".
 2017-11-27 12:11:58 +01:00
Ricardo Wurmus 35e78aaa25
gnu: r-rhdf5: Fix build phase. 
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Fix "unpack-smallhdf5"
phase.
 2017-11-27 12:11:52 +01:00