2923f3e5b9
gnu: r-msnid: Expand abbreviation in description.
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* gnu/packages/bioinformatics.scm (r-msnid)[description]: Expand "MS/MS"
to "tandem mass spectrometry".
2017-01-20 15:38:03 +01:00
e614d6398a
gnu: r-msnbase: Expand abbreviation in description.
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* gnu/packages/bioinformatics.scm (r-msnbase)[description]: Expand "MS"
to "mass spectrometry".
2017-01-20 15:38:03 +01:00
e431eb670d
gnu: Add r-fastica.
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* gnu/packages/statistics.scm (r-fastica): New variable.
2017-01-20 15:38:03 +01:00
793f2edbbc
gnu: Add r-lars.
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* gnu/packages/statistics.scm (r-lars): New variable.
2017-01-20 15:38:03 +01:00
efba686c80
gnu: Add r-mixtools.
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* gnu/packages/statistics.scm (r-mixtools): New variable.
2017-01-20 15:38:03 +01:00
c6017f7222
gnu: Add r-cowplot.
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* gnu/packages/statistics.scm (r-cowplot): New variable.
2017-01-20 15:38:02 +01:00
b726096bc5
services: network-manager: Use record for configuration.
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* gnu/services/network-manager.scm (<network-manager-configuration>): New
record type.
(network-manager-shpeherd-service): Change to use the
network-manager-configuration record, rather than a package. Generate a
simple configuration file from the network-manager-configuration record.
(network-manager-service-type): Update extensions to take the
network-manager-configuration rather than a package.
(network-manager-service): Remove function, the network-manager-service-type
can be used instead, and this avoids keeping the function signature and value
coresponding to the service type in sync.
* doc/guix.texi (Networking Services): Remove documentation for the removed
network-manager-service procedure, and add documentation of the
network-manager-service-type variable and network-manager-configuration
record.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-01-20 21:45:56 +08:00
4f98c3c553
gnu: obs: Update to 17.0.2.
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* gnu/packages/video.scm (obs): Update to 17.0.2.
[inputs]: Add alsa-lib, fontconfig, speex.
2017-01-20 11:33:19 +02:00
10a8746968
gnu: mariadb: Update to 10.1.21 [security fixes].
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Fixes CVE-2016-3238 and CVE-2017-{3238,3243,3244,3257,3258,3265,3291,3312,3317,
3318}.
* gnu/packages/databases.scm (mariadb): Update to 10.1.21.
2017-01-19 21:24:25 -05:00
caa7816673
services: Create /var/run/utmpx upon activation.
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This fixes a bug whereby /var/run/utmpx would never be created, and thus
accounting information would be missing.
* gnu/services.scm (activation-script): Create /var/run/utmpx.
* gnu/tests/base.scm (run-basic-test)["utmpx entry"]: New test.
2017-01-19 23:45:11 +01:00
150309726f
syscalls: Add utmpx procedures and data structure.
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* guix/build/syscalls.scm (<utmpx-entry>): New record type.
(%utmpx): New C struct.
(login-type): New bits.
(setutxent, endutxent, getutxent, utmpx-entries): New procedures.
2017-01-19 23:21:25 +01:00
57f068bec5
syscalls: Extract 'bytes->string'.
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* guix/build/syscalls.scm (bytes->string): New procedure.
(bytevector->string-list): Use it.
2017-01-19 23:20:57 +01:00
0691c9c05d
gnu: ansible: Update to 2.2.1 [fixes CVE-2016-9587].
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* gnu/packages/admin.scm (ansible): Update to 2.2.1.
2017-01-19 17:59:23 +01:00
d18b79fed8
import: github: Catch HTTP 403 error during fetch.
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* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
raised if a github token has not been set.
Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 17:17:16 +01:00
11f3885bb5
tests: Add 'nginx-service-type' test.
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* gnu/tests/web.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2017-01-19 14:44:59 +01:00
dc72a7f7f7
services: nginx: Add default values for <nginx-configuration> fields.
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* gnu/services/web.scm (<nginx-configuration>)[nginx, log-directory]
[run-directory, server-blocks, upstream-blocks, file]: Add default
values.
2017-01-19 14:44:59 +01:00
9c557a69ae
services: nginx: Add support for 'location' blocks.
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* gnu/services/web.scm (<nginx-server-configuration>): Add field 'locations'.
(<nginx-location-configuration>): New record type.
(<nginx-named-location-configuration>): New record type.
(nginx-location-config): New function.
(default-nginx-server-config): Include locations.
* doc/guix.texi (Web Services): Document the new nginx-location-configuration
and nginx-named-location-configuration data types, as well as the changes to
the nginx-server-configuration.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 14:44:59 +01:00
cb341293fa
services: nginx: Add support the 'upstream' module.
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* gnu/services/web.scm (<nginx-upstream-configuration>): New record type.
(<nginx-configuration>): Add new field upstream-blocks.
(nginx-upstream): New function.
(default-nginx-config): Add upstream-list parameter.
(nginx-service): Add optional upstream list keyword argument.
* doc/guix.texi (Web Services): Document the new nginx-upstream-configuration
data type and changes to the nginx function.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 14:44:59 +01:00
cb6d322afc
gnu: dnsmasq: Enable dbus support.
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* gnu/pacakges/dns.scm (dnsmasq): Enable dbus support to allow for
NetworkManager to use dnsmasq.
[native-inputs]: Add pkg-config.
[inputs]: Add dbus.
[arguments]: Add COPTS="-DHAVE_DBUS" to make-flags.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-01-19 20:05:24 +08:00
e87cb754a6
gnu: Add libgig.
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* gnu/packages/music.scm (libgig): New variable.
2017-01-19 09:54:15 +01:00
8a9cffb202
doc: Show how to deploy any version of Guix.
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* doc/guix.texi (Invoking guix pull): Give some examples of how to deploy
arbitrary Guix versions with the --url option.
2017-01-18 22:01:30 -05:00
840f38ba37
guix environment, build: Allow absolute file names with '--root'.
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Reported by Chris Webber.
* guix/scripts/build.scm (register-root): If ROOT is absolute, keep it
as is.
* guix/scripts/environment.scm (register-gc-root): Likewise.
* tests/guix-environment.sh (expected): Add test.
2017-01-19 00:11:15 +01:00
67fee545cc
gnu: Add Heimdal.
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* gnu/packages/kerberos.scm (heimdal): New variable.
2017-01-19 00:11:15 +01:00
89e34644d9
gnu: Move Kerberos implemetations to (gnu packages kerberos).
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* gnu/packages/mit-krb5.scm: Remove.
* gnu/packages/shishi.scm: Remove.
* gnu/packages/kerberos.scm: New file, from the concatenation of these
two.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gsasl.scm, gnu/packages/java.scm,
gnu/packages/networking.scm, gnu/packages/nfs.scm,
gnu/packages/onc-rpc.scm, gnu/packages/ssh.scm,
gnu/packages/web.scm: Adjust accordingly.
2017-01-19 00:11:15 +01:00
877c6163fa
gnu: stagit: Update to 0.5.
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* gnu/packages/version-control.scm (stagit): Update to 0.5.
2017-01-18 22:46:50 +01:00
9ca1972767
gnu: qemu: Fix CVE-2017-5525, CVE-2017-5526.
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* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2017-5525.patch,
gnu/packages/patches/qemu-CVE-2017-5526.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-01-18 23:32:49 +02:00
df893a3855
gnu: Add python-cram.
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* gnu/packages/python.scm (python-cram, python2-cram): New variables.
2017-01-18 21:28:59 +01:00
b9f771a795
gnu: Add leveldb.
...
* gnu/packages/databases.scm (leveldb): New variable.
2017-01-18 21:23:23 +01:00
cd4a232dd5
gnu: Add mcabber.
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* gnu/packages/messaging.scm (mcabber): New variable.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-01-18 20:24:18 +01:00
fdfb4b9604
gnu: Add loudmouth.
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* gnu/packages/messaging.scm (loudmouth): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-18 20:24:16 +01:00
395751c05d
gnu: Add menumaker.
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* gnu/packages/wm.scm (menumaker): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-18 19:11:22 +01:00
0d53d55cca
gnu: xf86-input-evdev: Update to 2.10.5.
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* gnu/packages/xorg.scm (xf86-input-evdev): Update to 2.10.5.
2017-01-18 18:28:35 +01:00
e19b0bd157
gnu: xf86-video-r128: Update to 6.10.2.
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* gnu/packages/xorg.scm (xf86-video-r128): Update to 6.10.2.
2017-01-18 18:25:55 +01:00
a354c7d8b4
gnu: xf86-video-savage: Update to 2.3.9.
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* gnu/packages/xorg.scm (xf86-video-savage): Update to 2.3.9.
2017-01-18 18:23:53 +01:00
619ff9329d
gnu: xf86-video-trident: Update to 1.3.8.
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* gnu/packages/xorg.scm (xf86-video-trident): Update to 1.3.8.
2017-01-18 18:22:12 +01:00
a0029fda3b
gnu: xf86-video-glint: Update to 1.2.9.
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* gnu/packages/xorg.scm (xf86-video-glint): Update to 1.2.9.
[source]: Remove upstreamed patch.
* gnu/packages/patches/xf86-video-glint-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-18 18:19:49 +01:00
f733e60345
gnu: xf86-video-nv: Update to 2.1.21.
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* gnu/packages/xorg.scm (xf86-video-nv): Update to 2.1.21.
[source]: Remove upstreamed patch.
* gnu/packages/patches/xf86-video-nv-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-18 18:15:56 +01:00
3a50b71298
gnu: xf86-video-siliconmotion: Update to 1.7.9.
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* gnu/packages/xorg.scm (xf86-video-siliconmotion): Update to 1.7.9.
2017-01-18 18:11:42 +01:00
c2a970582e
gnu: xf86-video-mga: Update to 1.6.5.
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* gnu/packages/xorg.scm (xf86-video-mga): Update to 1.6.5.
2017-01-18 18:10:04 +01:00
798dd616e3
gnu: xf86-video-sis: Update to 0.10.9.
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* gnu/packages/xorg.scm (xf86-video-sis): Update to 0.10.9.
2017-01-18 18:08:35 +01:00
76400ca594
gnu: xf86-video-tdfx: Update to 1.4.7.
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* gnu/packages/xorg.scm (xf86-video-tdfx): Update to 1.4.7.
2017-01-18 18:05:40 +01:00
1778ea740e
gnu: multiqc: Add python-nose to inputs.
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* gnu/packages/bioinformatics.scm (multiqc)[propagated-inputs]: Add
python-nose.
2017-01-18 16:09:49 +01:00
7c524e0f6b
gnu: screen: Update to 4.5.0.
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* gnu/packages/screen.scm (screen): Update to 4.5.0.
[home-page]: Use https.
2017-01-18 15:51:04 +02:00
899bcad310
gnu: Add emacs-sx.
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* gnu/packages/emacs.scm (emacs-sx): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-01-18 12:57:23 +03:00
cf006d2e73
gnu: Add emacs-ag.
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* gnu/packages/emacs.scm (emacs-ag): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2017-01-18 12:57:23 +03:00
12b8f6b401
gnu: Add font-wqy-microhei.
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* gnu/packages/fonts.scm (font-wqy-microhei): New variable.
2017-01-18 09:43:14 +01:00
3163a289ab
gnu: Add mlmmj.
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* gnu/packages/mail.scm (mlmmj): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-17 23:57:15 +01:00
6cd1059340
doc: Add '--manifest' example using 'specification->package+output'.
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* doc/guix.texi (Invoking guix package): Add --manifest example using
'specification->package+output'.
2017-01-17 23:57:15 +01:00
1f4f2360ad
gnu: guile-json: Update to 0.6.0.
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* gnu/packages/guile.scm (guile-json): Update to 0.6.0.
2017-01-17 23:57:15 +01:00
fd6e260ef7
gnu: Add ocaml-ocurl.
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* gnu/pcakages/ocaml.scm (ocaml-ocurl): New variable.
2017-01-17 23:22:07 +01:00
Ricardo Wurmus