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Author SHA1 Message Date
Leo Famulari a08a9b8c38
gnu: certbot, python-acme: Update to 0.16.0. 
* gnu/pckages/tls.scm (certbot, python-acme, python2-acme): Update to 0.16.0.
 2017-07-14 10:47:50 -04:00
Ben Woodcroft 06e372360e
gnu: bowtie: Use 'modify-phases'. 
* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Use 'modify-phases'
syntax.
 2017-07-14 19:23:37 +10:00
Ben Woodcroft d6e63cf31c
gnu: bowtie: Update to 2.3.2. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.3.2.
[inputs]: Add zlib.
 2017-07-14 18:54:10 +10:00
Tobias Geerinckx-Rice 78a81e37cd
gnu: terminals: Clean up module imports. 
* gnu/packages/terminals.scm: Remove duplicate module imports and order the
remainder alphabetically.
 2017-07-14 09:53:56 +02:00
Tobias Geerinckx-Rice 9e455df91a
gnu: hplip: Update to 3.17.6. 
* gnu/packages/cups.scm (hplip): Update to 3.17.6.
 2017-07-14 09:47:35 +02:00
Tobias Geerinckx-Rice 5e57867491
gnu: mit-krb5: Add ‘cpe-name’. 
* gnu/packages/kerberos.scm (mit-krb5)[properties]: New field.
 2017-07-14 09:47:34 +02:00
Tobias Geerinckx-Rice 674d4e1380
gnu: kbd: Recursively search $LOADKEYS_KEYMAP_PATH. 
Fix a regression since commit fd7000fe33.

* gnu/packages/linux.scm (kbd)[native-search-paths]: Add a double asterisk.
 2017-07-14 09:47:34 +02:00
Marius Bakke 9383cee38d
gnu: git: Update to 2.13.3. 
* gnu/packages/version-control.scm (git): Update to 2.13.3.
 2017-07-13 21:21:16 +02:00
Marius Bakke 5887d554ec
gnu: evince: Fix CVE-2017-1000083. 
* gnu/packages/patches/evince-CVE-2017-1000083.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (evince)[source]: Use it.
 2017-07-13 21:11:15 +02:00
Mark H Weaver a6ae4f83a4
gnu: linux-libre: Update to 4.12.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.1.
(%linux-libre-hash): Update hash.
 2017-07-13 13:48:47 -04:00
Mark H Weaver 2dfdedfbf7
gnu: linux-libre@4.9: Update to 4.9.37. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.37.
 2017-07-13 13:47:59 -04:00
Leo Famulari 3e879d1add
gnu: spice-protocol: Update to 0.12.13. 
* gnu/packages/spice.scm (spice-protocol): Update to 0.12.13.
 2017-07-13 12:32:15 -04:00
Leo Famulari dcd9a33147
gnu: httpd: Update to 2.4.27 [fixes CVE-2017-{9788,9789}]. 
* gnu/packages/web.scm (httpd): Update to 2.4.27.
 2017-07-13 11:35:22 -04:00
Leo Famulari df08f38570
gnu: libressl: Provide a TLS-enabled implementation of netcat. 
* gnu/packages/tls.scm (libressl)[arguments]: Pass '--enable-nc'
to #:configure-flags.
 2017-07-13 00:42:28 -04:00
Leo Famulari 1d919d32d7
gnu: libressl: Update to 2.5.5. 
* gnu/packages/tls.scm (libressl): Update to 2.5.5.
[source]: Use HTTPS URL.
 2017-07-13 00:42:27 -04:00
Leo Famulari 6fb622bf45
gnu: lynx: Update to 2.8.9dev.15. 
* gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.15.
 2017-07-12 22:41:05 -04:00
Leo Famulari 6c2481ef0f
gnu: libaacs: Use HTTPS URL. 
* gnu/packages/video.scm (libaacs)[source]: Use HTTPS URL.
 2017-07-12 21:57:40 -04:00
Leo Famulari 6f13c4fdd2
gnu: libbdplus: Use HTTPS URL. 
* gnu/packages/video.scm (libbdplus)[source]: Use HTTPS URL.
 2017-07-12 21:57:36 -04:00
Leo Famulari e3baf59cb3
gnu: xclip: Use a descriptive source file name. 
* gnu/packages/xdisorg.scm (xclip)[source]: Set the file-name.
 2017-07-12 21:12:09 -04:00
Ludovic Courtès c96ed00910
gnu: guix: Update snapshot. 
* gnu/packages/package-management.scm (guix): Update to b547349.
 2017-07-12 22:42:06 +02:00
Alex Vong 63cd4d53fb
gnu: Add simplescreenrecorder. 
* gnu/packages/video.scm (simplescreenrecorder): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-13 02:01:47 +05:30
Leo Famulari d89ce52096
gnu: spice: Fix CVE-2017-7506. 
* gnu/packages/patches/spice-CVE-2017-7506.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (spice)[source]: Use it.
 2017-07-12 16:27:40 -04:00
Leo Famulari 301565266f
gnu: usbredir: Use HTTPS home-page URL. 
* gnu/packages/spice.scm (usbredir)[home-page]: Use HTTPS URL.
 2017-07-12 16:27:40 -04:00
Leo Famulari 83ad0dfcbe
gnu: virt-viewer: Update to 5.0. 
* gnu/packages/spice.scm (virt-viewer): Update to 5.0.
 2017-07-12 16:27:37 -04:00
Kei Kebreau 5149ff1b5f
gnu: hyperrogue: Update to 9.4n. 
* gnu/packages/games.scm (hyperrogue): Update to 9.4n.
 2017-07-12 10:51:19 -04:00
Tobias Geerinckx-Rice 839ee8d547
gnu: et: Fix typo in description. 
* gnu/packages/ssh.scm (et)[description]: Fix typo.
 2017-07-12 09:47:48 +02:00
Leo Famulari 287900936b
gnu: man-db: Update to 2.7.6.1 [fixes CVE-2015-1336]. 
* gnu/packages/man.scm (man-db): Update to 2.7.6.1.
[arguments]: Add '--disable-cache-owner' to #:configure-flags.
 2017-07-11 22:52:25 -04:00
Marius Bakke e23cf9394e
gnu: nginx: Update to 1.12.1 [fixes CVE-2017-7529]. 
* gnu/packages/web.scm (nginx): Update to 1.12.1.
 2017-07-12 00:22:33 +02:00
Ludovic Courtès ce6223e68e
gnu: shadow: Fix cross-compilation. 
* gnu/packages/admin.scm (shadow)[arguments] <set-nscd-file-name>: Refer
to "cross-libc" when cross-compiling.
 2017-07-11 22:40:27 +02:00
Ludovic Courtès e4015e570c
gnu: inetutils: Allow for cross-compilation. 
* gnu/packages/admin.scm (inetutils)[arguments]: Pass
"--with-path-procnet-dev".
 2017-07-11 22:26:05 +02:00
Ludovic Courtès ed8111ea75
gnu: linux-pam: Disable NIS when cross-compiling. 
* gnu/packages/linux.scm (linux-pam)[arguments]: Pass "--disable-nis"
when cross-compiling.
 2017-07-11 21:54:19 +02:00
Ludovic Courtès d5ff67f411
gnu: mpg123: Update to 1.25.2 [fixes CVE-2017-10683]. 
* gnu/packages/mp3.scm (mpg123): Update to 1.25.2.
 2017-07-11 11:53:53 +02:00
rennes 64fce63708
gnu: Add lollypop. 
* gnu/packages/gnome.scm (lollypop): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-11 11:11:52 +02:00
Kei Kebreau 082725b502
gnu: hop: Update to 3.1.0-pre2. 
* gnu/packages/scheme.scm (hop): Update to 3.1.0-pre2.
[source]: Remove unnecessary patch.
[arguments]: Enable tests; disable parallel building; specify BIGLOO in
make-flags.
[inputs]: Add libgc, libunistring, libuv, pcre and sqlite.
* gnu/local.mk (dist_patch_DATA): Remove unnecessary patch.
* gnu/packages/patches/hop-linker-flags.patch: Delete file.
 2017-07-10 19:35:44 -04:00
Kei Kebreau 5e3ea571c5
gnu: bigloo: Update to 4.3a. 
* gnu/packages/scheme.scm (bigloo): Update to 4.3a.
[source]: Remove old patch. Add snippet.
[arguments]: Adjust the build phases accordingly.
[inputs]: Add libgc, libunistring, libuv, openssl, pcre and sqlite.
 2017-07-10 19:35:44 -04:00
Leo Famulari b48063536b
gnu: libpipeline: Update to 1.4.2. 
* gnu/packages/man.scm (libpipeline): Update to 1.4.2.
 2017-07-10 19:06:32 -04:00
Tobias Geerinckx-Rice b612e54f17
gnu: offlineimap: Update to 7.1.2. 
* gnu/packages/mail.scm (offlineimap): Update to 7.1.2.
 2017-07-10 22:25:14 +02:00
Tobias Geerinckx-Rice 3308591fec
gnu: sshuttle: Move python-pytest-runner. 
* gnu/packages/vpn.scm (sshuttle)[native-inputs]: Mark
python-pytest-runner as a test-only dependency, following up commit
447f75825f.
 2017-07-10 22:25:14 +02:00
Leo Famulari 61adfb00b1
gnu: libtiff: Fix two integer overflows. 
* gnu/packages/patches/libtiff-tiffycbcrtorgb-integer-overflow.patch,
gnu/packages/patches/libtiff-tiffycbcrtorgbinit-integer-overflow.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.
 2017-07-10 13:31:58 -04:00
Leo Famulari 625e7cd654
gnu: ncurses: Fix CVE-2017-10684 and CVE-2017-10685. 
* gnu/packages/patches/ncurses-CVE-2017-10684-10685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ncurses.scm (ncurses)[replacement]: New field.
(ncurses/fixed): New variable.
 2017-07-10 13:31:58 -04:00
Mark H Weaver ef019092b9
gnu: poppler: Fix null pointer dereferences. 
* gnu/packages/patches/poppler-fix-crash-with-broken-documents.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler/fixed)[source]: Add the patch.
 2017-07-10 12:59:07 -04:00
Feng Shu 2a9a220763
gnu: emacs-exwm-x: Update to 1.7.2. 
* gnu/packages/emacs.scm (emacs-exwm-x): Update to 1.7.2.
[propagated-inputs]: Add emacs-use-package.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-10 22:01:45 +05:30
Manolis Ragkousis a5fa1a1a54
gnu: unshield: Remove incorrect '"'. 
* gnu/packages/compression.scm (unshield): Remove incorrect '"'.
 2017-07-10 17:13:02 +03:00
Stefan Reichör c9a6a36fec
gnu: Add et. 
* gnu/packages/ssh.scm (et): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-10 12:37:04 +02:00
Alex Vong eb737a271a
gnu: emacs: Build with imagemagick support. 
* gnu/packages/emacs.scm (emacs)[inputs]: Add imagemagick.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-10 13:58:00 +05:30
Ricardo Wurmus 4883f70907
gnu: nss-pam-ldapd: Update to 0.9.8. 
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.8.
 2017-07-09 20:10:37 +02:00
Ricardo Wurmus 35407e29b0
gnu: qtractor: Update to 0.8.3. 
* gnu/packages/music.scm (qtractor): Update to 0.8.3.
 2017-07-09 19:51:18 +02:00
Ricardo Wurmus 9d737f1b69
gnu: guitarix: Update to 0.35.4. 
* gnu/packages/audio.scm (guitarix): Update to 0.35.4.
 2017-07-09 19:38:15 +02:00
Ricardo Wurmus 51a0885349
gnu: guitarix-lv2: Remove inputs override. 
* gnu/packages/audio.scm (guitarix-lv2)[inputs]: Remove.
 2017-07-09 19:36:28 +02:00
Ricardo Wurmus a20608a57a
gnu: gtk-doc: Fix dblatex problem. 
* gnu/packages/gtk.scm (gtk-doc)[arguments]: Add phase "set-HOME".
 2017-07-09 17:07:39 +02:00
Ricardo Wurmus b81dd94a79
gnu: dblatex: Use texlive-union. 
* gnu/packages/patches/dblatex-remove-multirow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/docbook.scm (dblatex)[source]: Use patch.
[inputs]: Replace "texlive" with a texlive-union.
 2017-07-09 17:07:39 +02:00
Ricardo Wurmus f45a552038
gnu: Add texlive-fonts-rsfs. 
* gnu/packages/tex.scm (texlive-fonts-rsfs): New variable.
 2017-07-09 17:07:39 +02:00
Ricardo Wurmus 9cc823f567
gnu: lilypond: Use texlive-union. 
* gnu/packages/music.scm (lilypond)[arguments]: Add phase "use-texlive-union".
[native-inputs]: Replace "texlive" with a texlive-union.
 2017-07-09 17:07:38 +02:00
Ricardo Wurmus b037ce949f
gnu: lilypond: Update to 2.19.63. 
* gnu/packages/music.scm (lilypond): Update to 2.19.63.
 2017-07-09 17:07:37 +02:00
Ricardo Wurmus 44436def9b
gnu: Add texlive-metapost. 
* gnu/packages/tex.scm (texlive-metapost): New variable.
 2017-07-09 17:07:37 +02:00
Ricardo Wurmus 406af0d663
gnu: Add texlive-latex-lh. 
* gnu/packages/tex.scm (texlive-latex-lh): New variable.
 2017-07-09 17:07:37 +02:00
Ricardo Wurmus ae3779d5cd
gnu: Add texlive-latex-eepic. 
* gnu/packages/tex.scm (texlive-latex-eepic): New variable.
 2017-07-09 17:07:37 +02:00
Ricardo Wurmus 1562763c0a
gnu: Add texlive-latex-eso-pic. 
* gnu/packages/tex.scm (texlive-latex-eso-pic): New variable.
 2017-07-09 17:07:36 +02:00
Ricardo Wurmus 83c830d1ac
gnu: Add texlive-fonts-ec. 
* gnu/packages/tex.scm (texlive-fonts-ec): New variable.
 2017-07-09 17:07:36 +02:00
Ricardo Wurmus 9186c1560b
gnu: Add texlive-generic-epsf. 
* gnu/packages/tex.scm (texlive-generic-epsf): New variable.
 2017-07-09 17:07:35 +02:00
Ricardo Wurmus cd2c77f434
gnu: Add texlive-latex-wasysym. 
* gnu/packages/tex.scm (texlive-latex-wasysym): New variable.
 2017-07-09 17:07:35 +02:00
Ricardo Wurmus acc620d6ed
gnu: Add texlive-latex-titlesec. 
* gnu/packages/tex.scm (texlive-latex-titlesec): New variable.
 2017-07-09 17:07:34 +02:00
Ricardo Wurmus 2db3a03445
gnu: Add texlive-latex-subfigure. 
* gnu/packages/tex.scm (texlive-latex-subfigure): New variable.
 2017-07-09 17:07:34 +02:00
Ricardo Wurmus d8fef6ea1f
gnu: Add texlive-fonts-stmaryrd. 
* gnu/packages/tex.scm (texlive-fonts-stmaryrd): New variable.
 2017-07-09 17:07:34 +02:00
Ricardo Wurmus adc02c70c2
gnu: Add texlive-latex-pdfpages. 
* gnu/packages/tex.scm (texlive-latex-pdfpages): New variable.
 2017-07-09 17:07:33 +02:00
Ricardo Wurmus da38b23595
gnu: Add texlive-latex-overpic. 
* gnu/packages/tex.scm (texlive-latex-overpic): New variable.
 2017-07-09 17:07:33 +02:00
Ricardo Wurmus ecffeeb54f
gnu: Add texlive-latex-multirow. 
* gnu/packages/tex.scm (texlive-latex-multirow): New variable.
 2017-07-09 17:07:32 +02:00
Ricardo Wurmus 02fd07b305
gnu: Add texlive-latex-jknapltx. 
* gnu/packages/tex.scm (texlive-latex-jknapltx): New variable.
 2017-07-09 17:07:32 +02:00
Ricardo Wurmus b2bc1daf98
gnu: Add texlive-latex-listings. 
* gnu/packages/tex.scm (texlive-latex-listings): New variable.
 2017-07-09 17:07:32 +02:00
Ricardo Wurmus 3921bc7c24
gnu: Add texlive-latex-footmisc. 
* gnu/packages/tex.scm (texlive-latex-footmisc): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus df2b9bb4de
gnu: Add texlive-latex-float. 
* gnu/packages/tex.scm (texlive-latex-float): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus 18ce343773
gnu: Add texlive-latex-fancyvrb. 
* gnu/packages/tex.scm (texlive-latex-fancyvrb): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus 20282111e5
gnu: Add texlive-latex-fancyhdr. 
* gnu/packages/tex.scm (texlive-latex-fancyhdr): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus 36ce05ffdd
gnu: Add texlive-latex-fancybox. 
* gnu/packages/tex.scm (texlive-latex-fancybox): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus e003a5f06d
gnu: Add texlive-latex-colortbl. 
* gnu/packages/tex.scm (texlive-latex-colortbl): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus b92ac281e5
gnu: Add texlive-latex-changebar. 
* gnu/packages/tex.scm (texlive-latex-changebar): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus 1d3be84e73
gnu: Add texlive-latex-appendix. 
* gnu/packages/tex.scm (texlive-latex-appendix): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus bda61541d5
gnu: Add texlive-latex-anysize. 
* gnu/packages/tex.scm (texlive-latex-anysize): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus 137f9cbc88
gnu: Add texlive-latex-amsfonts. 
* gnu/packages/tex.scm (texlive-latex-amsfonts): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus 98b4aca156
gnu: Add texlive-fonts-amsfonts. 
* gnu/packages/tex.scm (texlive-fonts-amsfonts): New variable.
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus beb476ed77
gnu: texlive-generic-ifxetex: Fix description. 
* gnu/packages/tex.scm (texlive-generic-ifxetex)[description]: Fix typo.
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus 05d28068ed
gnu: texlive-latex-oberdiek: Build ifpdf package. 
* gnu/packages/tex.scm (texlive-latex-oberdiek)[arguments]: Only build the
"oberdiek.ins" package (which includes all other packages); patch file to
build "ifpdf.dtx" instead of "ifpdf.ins".
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus 702f23b3b8
gnu: texlive-latex-base: Fix xetex and xelatex formats. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Build xetex and
xelatex formats with matching interpreters.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus fed7200862
gnu: deeptools: Update to 2.5.1. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus eb2200f3bd
gnu: Add python-py2bit. 
* gnu/packages/bioinformatics.scm (python-py2bit): New variable.
 2017-07-09 17:07:23 +02:00
Ricardo Wurmus bdb31853f0
gnu: Add java-jgit-4.2. 
* gnu/packages/version-control.scm (java-jgit-4.2): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus 2613f5aff0
gnu: Add java-jgit. 
* gnu/packages/version-control.scm (java-jgit): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus f8e4d0224b
gnu: Add java-slf4j-api. 
* gnu/packages/java.scm (java-slf4j-api): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus eb270ecfdd
gnu: Add java-javaewah. 
* gnu/packages/java.scm (java-javaewah): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus 218d093b15
gnu: Add java-classpathx-servletapi 
* gnu/packages/java.scm (java-classpathx-servletapi): New variable.
 2017-07-09 16:57:03 +02:00
Tobias Geerinckx-Rice efd5a841e5
gnu: youtube-dl: Update to 2017.07.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
 2017-07-09 15:58:35 +02:00
Marius Bakke ed40e7c5eb
gnu: libjpeg-turbo: Update to 1.5.2. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2.
[arguments]<#:phases>: Remove.
 2017-07-09 15:12:53 +02:00
Feng Shu e2155f58c0
gnu: you-get: Update to 0.4.775. 
* gnu/packages/video.scm (you-get): Update to 0.4.775.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-07-09 21:27:37 +10:00
Leo Famulari b3cc304b30
gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776. 
This is a followup to commit 95bbaa02aa.
See <https://bugs.gnu.org/27621> for more information.

Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.

This change leaves CVE-2017-9775 unfixed for now.

* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
 2017-07-09 02:25:27 -04:00
Tobias Geerinckx-Rice 447f75825f
gnu: sshuttle: Update to 0.78.3. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
 2017-07-09 01:59:25 +02:00
Kei Kebreau 5143517c99
gnu: wxmaxima: Update to 17.05.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
 2017-07-08 17:05:55 -04:00
Efraim Flashner fac2b430b9
gnu: font-gnu-unifont: Update to 10.0.04. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
 2017-07-08 23:49:29 +03:00
Ben Woodcroft 4732e6ee84
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.  Add patch.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
* gnu/packages/patches/blast+-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-08 12:05:59 +10:00
Kei Kebreau f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime. 
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
 2017-07-07 20:47:28 -04:00
Leo Famulari 0ca1e77c14
gnu: perl-dbd-mysql: Update to 4.043. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
 2017-07-07 20:34:52 -04:00
Marius Bakke d28f90bed9
gnu: python-pyopenssl: Fix test failure on 32-bit platforms. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
 2017-07-07 18:43:16 +02:00
Leo Famulari 4909eadfad
gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}]. 
* gnu/packages/irc.scm (irssi): Update to 1.0.4.
 2017-07-07 12:36:00 -04:00
Mark H Weaver 0b1e2ecb25
gnu: webkitgtk: Update to 2.16.5. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.5.
 2017-07-07 11:54:01 -04:00
Tobias Geerinckx-Rice 5826e7b11b
gnu: rdma-core: Update to 14. 
* gnu/packages/linux.scm (rdma-core): Update to 14.
 2017-07-07 15:24:14 +02:00
Tobias Geerinckx-Rice 5d3474c5a9
gnu: catimg: Update to 2.3.2. 
* gnu/packages/image-viewers.scm (catimg): Update to 2.3.2.
 2017-07-07 15:24:14 +02:00
Leo Famulari 642656a144
gnu: python-parsedatetime: Update to 2.4. 
* gnu/packages/python.scm (python-parsedatetime, python2-parsedatetime):
Update to 2.4.
 2017-07-07 01:23:12 -04:00
Leo Famulari 93013f1e79
gnu: python-icalendar: Update to 3.11.5. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.5.
 2017-07-07 01:23:08 -04:00
Alex Vong dab536fe1a
gnu: libtiff: Fix CVE-2017-{9936,10688}. 
* gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-07 00:06:37 -04:00
Kei Kebreau ab104672e1
gnu: xorg-server: Fix CVE-2017-{10971,10972}. 
* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xorg-server)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-06 23:52:22 -04:00
Alex Vong 96dcaa0ca9
gnu: youtube-dl: Update to 2017.07.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.02.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-07-07 01:50:27 +02:00
Leo Famulari 0a66c38764
Revert "gnu: blast+: Update to 2.6.0." 
This reverts commit 18dea67dc3.
 2017-07-06 19:38:55 -04:00
Ludovic Courtès 5dfbd76971
gnu: shadow: Correctly match the system type. 
* gnu/packages/admin.scm (shadow)[inputs]: Use 'string-contains' instead
of 'string-prefix?' when matching the system type.
 2017-07-07 00:44:55 +02:00
Mark H Weaver 879b89d1ae
gnu: linux-libre@4.9: Update to 4.9.36. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.36.
 2017-07-06 18:41:45 -04:00
Mark H Weaver 95f69e9cfc
gnu: linux-libre@4.4: Update to 4.4.76. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.76.
 2017-07-06 18:40:43 -04:00
Tobias Geerinckx-Rice 856f68786f
gnu: iproute: Update to 4.12.0. 
* gnu/packages/linux.scm (iproute): Update to 4.12.0.
 2017-07-06 15:57:16 +02:00
Rutger Helling d3f52500f3
gnu: xpra: Update to 2.0.3. 
* gnu/packages/xorg.scm (xpra): Update to 2.0.3.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-07-06 13:28:08 +05:30
Efraim Flashner 8c6acc3efe
gnu: freeipmi: Remove readline from inputs. 
This is a follow-up to 694b7c3180.

* gnu/packages/freeimpi.scm (freeipmi)[inputs]: Really remove readline.
 2017-07-06 09:45:52 +03:00
Efraim Flashner 694b7c3180
gnu: freeipmi: Update to 1.5.6. 
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.5.6.
[inputs]: Remove readline.
 2017-07-06 09:39:09 +03:00
Tobias Geerinckx-Rice 08094dc926
gnu: zstd: Update to 1.3.0. 
* gnu/packages/compression.scm (zstd): Update to 1.3.0.
 2017-07-06 01:28:05 +02:00
Tobias Geerinckx-Rice 6c69663400
gnu: libvirt: Update to 3.5.0. 
* gnu/packages/qemu.scm (libvirt): Update to 3.5.0.
 2017-07-06 01:28:05 +02:00
Tobias Geerinckx-Rice ab3cac3785
gnu: bash-completion: Update to 2.6. 
* gnu/packages/bash.scm (bash-completion): Update to 2.6.
 2017-07-06 01:28:05 +02:00
Marius Bakke a6a979cba3
gnu: mariadb: Update to 10.1.25. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.25.
 2017-07-06 00:15:14 +02:00
Marius Bakke 79937f72c3
gnu: strace: Update to 4.18. 
* gnu/packages/linux.scm (strace): Update to 4.18.
 2017-07-06 00:15:13 +02:00
Marius Bakke ece8bb3812
gnu: xscreensaver: Update to 5.37. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.37.
 2017-07-06 00:15:13 +02:00
Ludovic Courtès ad01c7aa14
gnu: artanis: Update source URL. 
* gnu/packages/guile.scm (artanis)[source]: Change URL to mirror://gnu.
 2017-07-06 00:02:41 +02:00
Efraim Flashner 298fd38b4b
gnu: julia: Add support for aarch64-linux. 
* gnu/packages/julia.scm (julia)[arguments]: Add make-flag argument for
aarch64-linux.
[supported-systems]: Add aarch64-linux.
 2017-07-05 20:26:46 +03:00
Efraim Flashner cdc827b3f3
gnu: gcompris: Update to 17.05. 
* gnu/packages/education.scm (gcompris): Update to 17.05.
 2017-07-05 12:40:40 +03:00
Efraim Flashner 0dd8791922
gnu: gcc@6: Update to 6.4.0. 
* gnu/packages/gcc.scm (gcc@6, gfortran@6): Update to 6.4.0.
 2017-07-05 08:31:46 +03:00
Leo Famulari 7550f8eaeb
gnu: net-tools: Remove `hostname` from description. 
This is a followup to commit c9e0a44eec.

* gnu/packages/linux.scm (net-tools)[description]: Update description.
 2017-07-05 00:35:37 -04:00
Leo Famulari e048de6098
gnu: inet-utils: Mention `hostname` in description. 
* gnu/packages/admin.scm (inetutils)[description]: Update description.
 2017-07-05 00:35:28 -04:00
Stefan Reichör 2d677f84f4
gnu: tmux: Update to 2.5. 
* gnu/packages/tmux.scm (tmux): Update to 2.5.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-05 00:24:02 +02:00
ng0 32f9cc3386
gnu: alpine: Use new URL. 
* gnu/packages/mail.scm (alpine)[source]: Use new URL for download.
(home-page): Use new URL.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-07-05 00:24:02 +02:00
Ludovic Courtès 425ab478ac
gnu: shepherd: Allow cross-compilation. 
* gnu/packages/admin.scm (shepherd)[native-inputs]: Add GUILE-2.0.
 2017-07-04 23:45:12 +02:00
Ludovic Courtès ba4aca3ae4
gnu: util-linux: Fix cross-compilation. 
* gnu/packages/linux.scm (util-linux)[inputs]: Add NET-BASE
when (%current-target-system) is true.  Fixes cross-compilation.
 2017-07-04 23:45:12 +02:00
Feng Shu e208bf789c
gnu: emacs-exwm-x: Update to 1.6.2. 
* gnu/packages/emacs.scm (emacs-exwm-x): Update to 1.6.2.
 2017-07-04 22:03:15 +02:00
Feng Shu adaebe80fb
gnu: emacs-switch-window: Update to 1.5.1. 
* gnu/packages/emacs.scm (emacs-switch-window): Update to 1.5.1.
 2017-07-04 22:02:12 +02:00
Efraim Flashner ce7e361fa3
gnu: gemma: Fix building on non-Intel architectures. 
* gnu/packages/patches/gemma-intel-compat.patch: New file.
* gnu/packages/bioinformatics.scm (gemma)[source]: Add patch.
[arguments]: Add NO_INTEL_COMPAT flag on non-Intel architectures.
* gnu/local.mk (dist_patch_DATA): Register patch.
 2017-07-04 22:55:44 +03:00
Arun Isaac 0545e43a91
gnu: gajim: Update to 0.16.8. 
* gnu/packages/messaging.scm (gajim): Update to 0.16.8.
[source]: Remove patch.
* gnu/packages/patches/gajim-CVE-2016-10376.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-04 23:07:15 +05:30
Ben J Woodcroft a522517cdb
gnu: diamond: Update to 0.9.9. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.9.
 2017-07-04 19:59:01 +10:00
Ben Woodcroft 18dea67dc3
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
 2017-07-04 19:58:42 +10:00
Mark H Weaver c24ea83cd7
gnu: linux-libre: Update to 4.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.11-i686.conf,
gnu/packages/aux-files/linux-libre/4.11-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Update accordingly.
 2017-07-04 04:24:58 -04:00
Efraim Flashner fdaf6cd345
gnu: qt: Update to 5.9.1. 
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras)
(qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors)
(qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel)
(qtlocation, qttools, qtscript, qtquickcontrols, qtquickcontrols2)
(qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing, qtcanvas3d)
(qtcharts, qtdatavis3d, qtwebkit): Update to 5.9.1.
(qtwebkit)[source]: Change to official qt location.
 2017-07-04 08:55:00 +03:00
Marius Bakke a8a964db83
gnu: python-pylint: Update to 1.7.2. 
* gnu/packages/python.scm (python-pylint): Update to 1.7.2.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-PYTEST-RUNNER.
 2017-07-04 02:52:26 +02:00
Marius Bakke de2f56cf96
gnu: python-astroid: Update to 1.5.3. 
* gnu/packages/python.scm (python-astroid): Update to 1.5.3.
[properties]: Declare python2 variant.
(python2-astroid)[propagated-inputs]: Add PYTHON2-BACKPORTS-FUNCTOOLS-LRU-CACHE,
PYTHON2-ENUM34 and PYTHON2-SINGLEDISPATCH.
 2017-07-04 02:52:26 +02:00
Marius Bakke 96bbc41f8b
gnu: python-pyopenssl: Update to 17.1.0. 
* gnu/packages/python.scm (python-pyopenssl, python2-pyopenssl): Update to 17.1.0.
[source]: Remove patch.
[native-inputs]: Add PYTHON-PRETEND.
[arguments]<#:phases>: Disable the network test here instead of via a patch.
Also disable one new test.
* gnu/packages/patches/python-pyopenssl-skip-network-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-07-04 02:52:26 +02:00
Marius Bakke 89fc5b82d4
gnu: python-cryptography: Update to 1.9. 
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.9.
(python-cryptography): Update to 1.9.
[propagated-inputs]: Remove PYTHON-PACKAGING.
 2017-07-04 02:52:25 +02:00
Marius Bakke 029933cf79
gnu: python-cffi: Update to 1.10.0. 
* gnu/packages/python.scm (python-cffi): Update to 1.10.0.
[arguments]<#:phases>: Patch distutils.ccompiler call to use "gcc". Patch
another hard-coded cc invocation. Adjust `py.test` invocation per README.
 2017-07-04 02:52:25 +02:00
Marius Bakke 295f32f34b
gnu: python-cffi: Really enable tests. 
* gnu/packages/python.scm (python-cffi, python2-cffi)[arguments]: Replace
'check' phase with custom expression. Change to 'modify-phases' syntax.
 2017-07-04 02:52:25 +02:00
Marius Bakke 92d7e87c59
gnu: re2: Update to 2017-07-01. 
* gnu/packages/regex.scm (re2): Update to 2017-07-01.
 2017-07-04 02:52:25 +02:00
Tobias Geerinckx-Rice f88eaccf19
gnu: ibus: Update to 1.5.16. 
* gnu/packages/ibus.scm (ibus): Update to 1.5.16.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice e97b75d997
gnu: cdogs-sdl: Update to 0.6.5. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.5.
[inputs]: Add mesa.
[home-page]: Use HTTPS.
 2017-07-04 00:51:52 +02:00
Tobias Geerinckx-Rice e9e3a69d36
gnu: nnn: Update to 1.2. 
* gnu/packages/admin.scm (nnn): Update to 1.2.
 2017-07-04 00:51:52 +02:00
Kei Kebreau 910f1709a8
gnu: gcr: Correct patch. 
* gnu/packages/patches/gcr-disable-failing-tests.patch: Correct
erroneously committed file.

This is a follow-up to commit 85c774808f.
 2017-07-03 18:42:50 -04:00
Ludovic Courtès d5ec5ed719
packages: Mark 'replacement' as an "innate" field. 
Suggested by Mark H Weaver
at <https://lists.gnu.org/archive/html/guix-devel/2017-06/msg00355.html>.

* guix/packages.scm (<package>)[replacement]: Mark as "innate".
* gnu/packages/base.scm (glibc-2.25-patched, glibc-2.24)
(glibc-2.23, glibc-2.22, glibc-2.21, glibc-locales): Remove
'replacement' field, which was set to #f.
* gnu/packages/commencement.scm (perl-boot0): Likewise.
* gnu/packages/fontutils.scm (graphite2/fixed): Likewise.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Likewise.
* gnu/packages/gnupg.scm (libgcrypt-1.7.8): Likewise.
* gnu/packages/guile.scm (guile-2.0/fixed, guile-2.2): Likewise.
* gnu/packages/icu4c.scm (icu4c/fixed): Likewise.
* gnu/packages/image.scm (libpng-apng): Likewise.
* gnu/packages/make-bootstrap.scm (%guile-static): Likewise.
* gnu/packages/pcre.scm (pcre/fixed): Likewise.
* gnu/packages/perl.scm (perl/fixed): Likewise.
* gnu/packages/ruby.scm (ruby-2.3, ruby-2.2, ruby-2.1)
(ruby-1.8): Likewise.
* gnu/packages/tls.scm (gnutls-3.5.13, gnutls/guile-2.2): Likewise.
* gnu/packages/xml.scm (expat-2.2.1): Likewise.
 2017-07-03 23:51:22 +02:00
Nicolas Goaziou f6444059dd
gnu: wine: Add stable release. 
* gnu/packages/wine.scm (wine): Refer to stable release instead of development
  one.
(wine-next): New variable.
 2017-07-03 18:10:11 +02:00
Oleg Pykhalov aadd75acd6
gnu: Add emacs-emamux. 
* gnu/packages/emacs.scm (emacs-emamux): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2017-07-03 22:34:40 +08:00
Kei Kebreau 85c774808f
gnu: gcr: Enable working tests. 
* gnu/packages/patches/gcr-disable-failing-tests.patch,
gnu/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
* gnu/packages/gnome.scm (gcr)[source]: Use patches.
[arguments]: Enable tests.
 2017-07-03 09:52:59 -04:00
宋文武 1ec0c1f30e
gnu: xfce: Propagate search paths of 'xfce4-panel'. 
* gnu/packages/xfce.scm (xfce)[native-search-paths]: New field.
 2017-07-03 19:27:56 +08:00
Roel Janssen fd2d17cdae
gnu: Add emacs-sparql-mode. 
* gnu/packages/emacs.scm (emacs-sparql-mode): New variable.
 2017-07-03 13:02:07 +02:00
Ludovic Courtès 1b0f266e40
gnu: Switch guile-cairo and dependents to Guile 2.2 again. 
Fixes <https://bugs.gnu.org/27551>.
Reported by Leo Famulari <leo@famulari.name>.

This reinstates the following commits:

  e3ddb1e83 * gnu: guile-cairo: Switch to Guile 2.2.
  ae5c6ef39 * gnu: guile-gnome: Update to 2.16.5.
  0fd8013fc * gnu: guile-rsvg: Update to commit 05c6a2fd.
  66b9183c4 * gnu: guile-lib: Switch to Guile 2.2.

and adds the following changes:

* gnu/bootloader/grub.scm (svg->png): Add 'package->derivation' call for
GUILE-2.2.  Pass #:guile-for-build to 'gexp->derivation'.
* gnu/build/svg.scm (svg->png): Add 'em' and 'ex' to the 'let-values'
form to account for all the values returned by
'rsvg-handle-get-dimensions', which Guile 2.2 does not truncate.
 2017-07-02 22:52:30 +02:00
Theodoros Foradis 61f81618a8
gnu: Add toxic. 
* gnu/packages/messaging.scm (toxic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-02 22:52:27 +02:00
Alex Kost 3fb8e281b7
gnu: emacs-guix: Update to 0.3.2. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.2.
[arguments]: Add '--with-guix-site-ccache-dir' configure flag, as Guix
installs its .go files separately nowadays.
 2017-07-02 20:45:18 +03:00
Leo Famulari f277dea2e2
gnu: beets: Update to 1.4.5. 
* gnu/packages/music.scm (beets): Update to 1.4.5.
 2017-07-02 11:35:04 -04:00
Leo Famulari e00a59097e
gnu: python-vobject: Update to 0.9.5. 
* gnu/packages/python.scm (python-vobject, python2-vobject): Update to 0.9.5.
 2017-07-02 09:17:20 -04:00
Leo Famulari 477aa33400
gnu: vdirsyncer: Update to 0.16.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.0.
[license]: Change to bsd-3.
 2017-07-02 09:17:16 -04:00
Efraim Flashner bfba12695a
gnu: ovmf: Fix build on x86_64. 
This is a follow-up to 2eb95ade8f.

* gnu/packages/firmware.scm (ovmf)[arguments]: Fix the syntax used when
following the x86_64 fork of the arguments.
 2017-07-02 13:13:35 +03:00
Efraim Flashner dd78efe39a
gnu: font-google-noto: Update to 20170403. 
* gnu/packages/fonts.scm (font-google-noto): Update to 20170403.
[source]: Update source uri.
 2017-07-01 23:45:20 +03:00
Efraim Flashner fc19cee18c
gnu: font-gnu-unifont: Update to 10.0.03. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.03.
[properties]: Add 'upstream-name' to ease updates.
 2017-07-01 23:45:19 +03:00
Leo Famulari 5ace0919c2
Revert "gnu: guile-lib: Switch to Guile 2.2." 
This reverts commit 66b9183c4f.
 2017-07-01 16:08:47 -04:00
Leo Famulari 6b820ef15d
Revert "gnu: guile-rsvg: Update to commit 05c6a2fd." 
This reverts commit 0fd8013fca.
 2017-07-01 16:08:47 -04:00
Leo Famulari 5e1f9b3042
Revert "gnu: guile-gnome: Update to 2.16.5." 
This reverts commit ae5c6ef393.
 2017-07-01 16:08:47 -04:00
Leo Famulari f3bb868a71
Revert "gnu: guile-cairo: Switch to Guile 2.2." 
This commit caused the build of grub-image.png to fail, prevent the
build of grub.cfg and reconfiguring of GuixSD:

<https://bugs.gnu.org/27551>

This reverts commit e3ddb1e832.
 2017-07-01 16:08:47 -04:00
Leo Famulari dc03f32dea
gnu: guile-git: Update source URL. 
* gnu/packages/guile.scm (guile-git)[source]: Update URL.
 2017-07-01 15:25:21 -04:00
Ben Woodcroft ba773f65f0
gnu: cd-hit: Update to 4.6.8. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.8.
 2017-07-01 10:49:37 +10:00
Ben Woodcroft fd99d95b3f
gnu: bwa: Update to 0.7.15. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.15.
 2017-07-01 09:48:20 +10:00
Tobias Geerinckx-Rice 97d451540c
gnu: btrfs-progs: Update to 4.11.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.11.1.
 2017-07-01 01:23:41 +02:00
Tobias Geerinckx-Rice 0c7ce625b7
gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377]. 
* gnu/packages/tor.scm (tor): Update to 0.3.0.9.
 2017-07-01 00:20:53 +02:00
Feng Shu f4ade9b6c8
gnu: Add emacs-exwm-x. 
* gnu/packages/emacs.scm (emacs-exwm-x): New variable.
 2017-06-30 23:30:31 +02:00
Feng Shu 58addd2b20
gnu: Add emacs-switch-window. 
* gnu/packages/emacs.scm (emacs-switch-window): New variable.
 2017-06-30 23:30:31 +02:00
Ludovic Courtès e3ddb1e832
gnu: guile-cairo: Switch to Guile 2.2. 
This patch adjusts dependent packages accordingly.

* gnu/packages/gtk.scm (guile-cairo)[inputs]: Switch to GUILE-2.2 and
GUILE-LIB.
(guile-rsvg)[inputs]: Likewise.
(guile-present)[inputs]: Likewise.
(guile-gnome)[inputs]: Likewise.
* gnu/packages/plotutils.scm (guile-charting)[inputs]: Switch go
GUILE-2.2.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès ae5c6ef393
gnu: guile-gnome: Update to 2.16.5. 
* gnu/packages/gtk.scm (guile-gnome): Update to 2.16.5.
[arguments] <pre-configure>: Use @GUILE_EFFECTIVE_VERSION@ instead of
"2.0".
[properties]: New field.
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 0fd8013fca
gnu: guile-rsvg: Update to commit 05c6a2fd. 
* gnu/packages/gtk.scm (guile-rsvg): Update to commit 05c6a2fd.
[source](url): Change to gitlab.com.
(snippet): Use @GUILE_EFFECTIVE_VERSION@ instead of "2.0".
* gnu/packages/patches/guile-rsvg-pkgconfig.patch: Use
"$GUILE_EFFECTIVE_VERSION" instead of "2.0".
 2017-06-30 23:20:34 +02:00
Ludovic Courtès 66b9183c4f
gnu: guile-lib: Switch to Guile 2.2. 
* gnu/packages/guile.scm (guile-lib)[inputs]: Replace GUILE-2.0 with
GUILE-2.2.
(guile2.0-lib): New variable.
(guile2.2-lib): Mark as deprecated.
* gnu/packages/guile.scm (guile-ics): Use GUILE2.0-LIB.
* gnu/packages/gtk.scm (guile-cairo, guile-rsvg)
(guile-present, guile-gnome): Likewise.
* gnu/packages/skribilo.scm (skribilo): Likewise.
 2017-06-30 23:20:33 +02:00
Ludovic Courtès 30f17d73d6
gnu: guile-lib: Update to 0.2.5.1. 
* gnu/packages/guile.scm (guile-lib): Update to 0.2.5.1.
 2017-06-30 23:20:33 +02:00
Leo Famulari f48a9d4a46
gnu: npth: Update to 1.5. 
* gnu/packages/gnupg.scm (npth): Update to 1.5.
 2017-06-30 16:54:05 -04:00
Leo Famulari 9570b01631
gnu: libreoffice: Update to 5.3.2.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.2.2.
 2017-06-30 16:11:45 -04:00
Ludovic Courtès 798b7678a0
gnu: hwloc: Add "lib" and "debug" outputs. 
* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
 2017-06-30 18:44:41 +02:00
Ludovic Courtès 7eb9f31cd9
gnu: hwloc: Use /var as the localstatedir. 
* gnu/packages/mpi.scm (hwloc)[arguments]: Add #:configure-flags.
 2017-06-30 18:44:41 +02:00
Gregor Giesen 2973ebf504
gnu: Add mkvtoolnix. 
* gnu/packages/video.scm (mkvtoolnix): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 15f1d02aad
gnu: Add libmatroska. 
* gnu/packages/video.scm (libmatroska): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen 5bc2d5798d
gnu: Add libebml. 
* gnu/packages/xml.scm (libebml): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:41 -04:00
Gregor Giesen bf7c369940
gnu: Add nlohmann-json-cpp. 
* gnu/packages/serialization.scm (nlohmann-json-cpp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-06-30 12:43:40 -04:00
Leo Famulari ecb232bdfc
gnu: isc-dhcp: Update bundled bind to 9.9.10-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P2.
 2017-06-30 11:59:31 -04:00
Leo Famulari faa1369e3c
gnu: bind: Update to 9.11.1-P2 [fixes CVE-2017-{3142,3143}]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.11.1-P2.
 2017-06-30 11:59:28 -04:00
Arun Isaac 0ac042324a
gnu: Add jo. 
* gnu/packages/web.scm (jo): New variable.
 2017-06-30 20:02:13 +05:30
Oleg Pykhalov c97979d629
gnu: Add emacs-org-edit-latex. 
* gnu/packages/emacs.scm (emacs-org-edit-latex): New variable.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
 2017-06-30 19:09:32 +05:30
Ricardo Wurmus 3a4d5df2b0
gnu: itpp: Use texlive-tiny and ghostscript. 
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with
texlive-tiny; add ghostscript.
 2017-06-30 13:57:42 +02:00
Ricardo Wurmus 612a387fe7
gnu: gnuplot: Use texlive-tiny. 
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a023ec6e4c
gnu: giac-xcas: Use texlive-tiny. 
* gnu/packages/algebra.scm (giac-xcas)[inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus a8b0948b7c
gnu: pari-gp: Use texlive-tiny. 
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Replace texlive-minimal
with texlive-tiny.
 2017-06-30 13:57:41 +02:00
Ricardo Wurmus 84889519bb
gnu: po4a: Use texlive-tiny. 
* gnu/packages/gettext.scm (po4a)[native-inputs]: Replace texlive-minimal with
texlive-tiny.
 2017-06-30 13:57:41 +02:00
Mark H Weaver 588b22575d
gnu: linux-libre: Update to 4.11.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.8.
(%linux-libre-hash): Update hash.
 2017-06-30 00:13:36 -04:00
Mark H Weaver 426187d278
gnu: linux-libre@4.9: Update to 4.9.35. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.35.
 2017-06-30 00:12:55 -04:00
Mark H Weaver 5d7f9c156e
gnu: linux-libre@4.4: Update to 4.4.75. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.75.
 2017-06-30 00:12:16 -04:00
Mark H Weaver 5a1b5dccf0
gnu: linux-libre@4.1: Update to 4.1.42 [mitigates CVE-2017-1000364]. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.42.
 2017-06-30 00:11:10 -04:00
Leo Famulari 95bbaa02aa
gnu: poppler: Fix CVE-2017-{9775,9776}. 
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler-0.56.0): New variable.
(poppler-qt4, poppler-qt5): Use 'package/inherit'.
 2017-06-29 16:40:10 -04:00
Efraim Flashner 1b6d3b7a23
gnu: thermald: Add file-name for source. 
* gnu/packages/admin.scm (thermald)[source]: Add file-name field.
 2017-06-29 23:09:24 +03:00
Efraim Flashner 86ee76254b
gnu: thermald: Only build on i686 and x86_64. 
* gnu/packages/admin.scm (thermald)[supported-systems]: New field.
 2017-06-29 23:08:17 +03:00
Efraim Flashner ef2c7fb5da
gnu: libgcrypt: Add mitigation for CVE-2017-7526. 
* gnu/packages/gnupg.scm (libgcrypt)[replacment]: New field.
(libgcrypt-1.7.8): New variable.
(libgcrypt-1.5)[replacment]: New field.
 2017-06-29 21:04:33 +03:00
Jan Nieuwenhuizen 604e494dc0
gnu: mes: Update to 0.8. 
* gnu/packages/mes.scm (mes): Update to 0.8.
 2017-06-29 18:11:34 +02:00
Jan Nieuwenhuizen 9ae3fcb9e8
gnu: Add mescc-tools. 
* gnu/packages/mes.scm (mescc-tools): New variable.
 2017-06-29 18:09:42 +02:00
Ricardo Wurmus b8d3a000ef
gnu: libxfce4ui: Do not propagate gtk+-2. 
Propagation of both gtk+ and gtk+-2 causes a conflict to be detected,
preventing the installation of xfce.

* gnu/packages/xfce.scm (libxfce4ui)[propagated-inputs]: Move "gtk+-2"...
[inputs]: ...to here.
(garcon)[inputs]: Add "gtk+-2".
(xfce4-appfinder)[inputs]: Add "gtk+-2".
(xfce4-power-manager)[inputs]: Add "gtk+-2".
(ristretto)[inputs]: Add "gtk+-2".
 2017-06-29 16:06:14 +02:00
Ricardo Wurmus c860d6ef23
gnu: xfce: Build union instead of propagating inputs. 
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: Move all...
[inputs]: ...here.
[arguments]: Build a union.
 2017-06-29 16:06:14 +02:00
Alex Vong d34970ee2b
gnu: clojure: Update "tools-reader-src" to 1.0.0. 
* gnu/packages/java.scm (clojure)[inputs]: Update "tools-reader-src" to
1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Dave Love a73e7dd3b0
gnu: Add procenv. 
* gnu/packages/linux.scm (procenv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Jelle Licht b786661309
gnu: ansible: Apply experimental patch to deal with wrapping of ansible script. 
See <http://lists.gnu.org/archive/html/bug-guix/2017-05/msg00015.html> for the
rationale.

* gnu/packages/patches/ansible-wrap-program-hack.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (ansible)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Jelle Licht aafcfffd93
gnu: node: Update to 8.1.2. 
* gnu/packages/node.scm (node): Update to 8.1.2.
(node)[arguments]: Disabled more tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-06-29 15:21:18 +02:00
Ludovic Courtès 3ab869b63f
gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64. 
This fixes a regression introduced in
ef39a17717, which would break
python-scipy ("undefined reference to `zungqr_'").

* gnu/packages/maths.scm (lapack)[arguments]: Add
"-DCMAKE_INSTALL_LIBDIR" to #:configure-flags.
 2017-06-29 15:21:17 +02:00
Efraim Flashner 2eb95ade8f
gnu: ovmf: Only build 32-bit firmware on i686-linux. 
* gnu/packages/firmware.scm (ovmf)[arguments]: Only when the build
machine is x86_64-linux should the 64-bit firmware be built and
installed.
 2017-06-29 12:54:54 +03:00
Efraim Flashner 8363a83517
gnu: openh264: Fix building on armhf and aarch64. 
* gnu/packages/video.scm (openh264)[arguments]: Add 'CC=gcc' to
the #:make-flags.
 2017-06-29 11:44:49 +03:00
Efraim Flashner fcf4003950
gnu: r-spams: Update to 2.6-2017-03-22. 
* gnu/packages/statistics.scm (r-spams): Update to 2.6-2017-03-22.
[arguments]: Remove R-3.3 work-around and syntax fixes, add phase to
prevent tuning r-spams to the compiling hardware.
 2017-06-29 10:02:58 +03:00
Eric Bavier 691ae7fa7a
gnu: wdiff: Remove unused screen input. 
* gnu/packages/wdiff.scm (wdiff): 'inputs' -> 'native-inputs'.
[native-inputs]: Remove unused screen input.
[arguments]: Use modify-phases.
 2017-06-28 23:25:23 -05:00
Eric Bavier 57dfc9f86c
gnu: screen: Update to 4.6.0. 
* gnu/packages/screen.scm (screen): Update to 4.6.0.
[source]: Remove patch.
* gnu/packages/patches/screen-fix-info-syntax-error.patch: Delete patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-06-28 22:59:41 -05:00
Eric Bavier 59b53c4227
gnu: moe: Update to 1.9. 
* gnu/packages/moe.scm (moe): Update to 1.9.
 2017-06-28 22:54:14 -05:00
Ricardo Wurmus 6309636640
gnu: emacs-ess: Use texlive-union instead of texlive. 
* gnu/packages/emacs.scm (emacs-ess)[arguments]: Add phase "set-HOME".
[native-inputs]: Replace texlive with a texlive-union.
 2017-06-29 01:54:34 +02:00
Ricardo Wurmus a0aa6b59dd
gnu: Add texlive-tex-texinfo. 
* gnu/packages/tex.scm (texlive-tex-texinfo): New variable.
 2017-06-29 01:54:34 +02:00
Ricardo Wurmus 9f86ef85cf
gnu: Add texlive-latex-hyperref. 
* gnu/packages/tex.scm (texlive-latex-hyperref): New variable.
 2017-06-29 01:54:34 +02:00
Ricardo Wurmus bd6e23856f
gnu: texlive-latex-base: Install additional formats. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Additionally build and
install tex.fmt, pdftex.fmt, pdfetex.fmt, and pdflatex.fmt.
 2017-06-29 01:54:34 +02:00
Leo Famulari 6bcf1cd5db
gnu: mpg123: Update to 1.25.0. 
* gnu/packages/mp3.scm (mpg123): Update to 1.25.0.
 2017-06-28 11:21:45 -04:00
Ricardo Wurmus e61bc976f6
gnu: snakemake: Fix cluster execution. 
* gnu/packages/python.scm (snakemake)[arguments]: Add build phase
"call-wrapper-not-wrapped-snakemake".
 2017-06-28 16:49:20 +02:00
Efraim Flashner 03b055a116
gnu: darktable: Limit supported platforms. 
* gnu/packages/photo.scm (darktable)[supported-systems]: New field,
explicitly limit to i686-linux, x86_64-linux and aarch64-linux.
 2017-06-28 15:36:49 +03:00
Mark H Weaver b049ae2f97
gnu: xf86-video-intel: Use UXA accel method by default. 
* gnu/packages/xorg.scm (xf86-video-intel)[arguments]: Add #:configure-flags
with "--with-default-accel=uxa".
 2017-06-28 06:14:59 -04:00
Mark H Weaver d07d292808
gnu: icecat: Add more fixes from upstream mozilla-esr52. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
 2017-06-28 06:09:59 -04:00
Efraim Flashner fea0040405
gnu: aria2: Update to 1.32.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.32.0.
 2017-06-28 11:20:11 +03:00
Efraim Flashner ceb56fb129
gnu: translate-shell: Update to 0.9.6.4. 
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.4.
 2017-06-28 09:36:02 +03:00
Ricardo Wurmus 9dac2a8ef4
gnu: emacs-calfw: Fix typo in description. 
* gnu/packages/emacs.scm (emacs-calfw)[description]: Fix typo.
 2017-06-28 07:56:51 +02:00
Ricardo Wurmus 51c15375ab
gnu: texlive-latex-graphics: Update hash for graphics-def. 
This is a follow-up commit to e3c970fc5c.

* gnu/packages/tex.scm (texlive-latex-graphics)[native-inputs]: Update hash
for graphics-def.
 2017-06-28 07:56:51 +02:00
Ricardo Wurmus 171160d569
gnu: Add texlive-latex-seminar. 
* gnu/packages/tex.scm (texlive-latex-seminar): New variable.
 2017-06-28 07:56:50 +02:00
Ricardo Wurmus 9b416042d1
gnu: Add texlive-latex-natbib. 
* gnu/packages/tex.scm (texlive-latex-natbib): New variable.
 2017-06-28 07:56:50 +02:00
Mark H Weaver c75a3081a3
gnu: linux-libre@4.4: Update to 4.4.74. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.74.
[source]: Remove patch.
 2017-06-28 00:54:05 -04:00
Kei Kebreau 795f3a0088
gnu: python-xsge: Fix source URL. 
* gnu/packages/game-development.scm (python-xsge)[source]: Fix URL.
 2017-06-27 20:28:06 -04:00
Ludovic Courtès 1873321279
gnu: kde-frameworks: Fix 'license' fields. 
* gnu/packages/kde-frameworks.scm (kde-frameworkintegration)[license]:
Turn into a list of <license> objects.
(kdelibs4support)[license]: Likewise.
(khtml)[license]: Likewise.
(kjs)[license]: Likewise.
(kross)[license]: Likewise.
 2017-06-27 22:41:31 +02:00
Arun Isaac 2482c02f3b
gnu: emacs-which-key: Avoid leading "(" in description line. 
* gnu/packages/emacs.scm (emacs-which-key): Reformat description to avoid a
line beginning with "(" because such lines break indentation in Emacs.
 2017-06-27 11:39:01 +05:30
Danny Milosavljevic b74e2f610a
gnu: stellarium: Update to 0.16.0. 
* gnu/packages/astronomy.scm (stellarium)[inputs]: Add qtlocation.
[arguments]: Remove "patch-version-check" phase.
Add "patch-tests" phase.
 2017-06-26 22:36:31 +02:00
Leo Famulari 4d9d9e3fed
gnu: Add thc-ipv6. 
* gnu/packages/networking.scm (thc-ipv6): New variable.
 2017-06-26 14:50:02 -04:00
Gábor Boskovits c2700e785b
gnu: Add quagga. 
* gnu/packages/networking.scm (quagga): New variable.
* gnu/packages/patches/quagga-reproducible-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-06-26 20:37:44 +02:00
Ludovic Courtès 26599d692c
gnu: scotch: Build in 64-bit mode on 64-bit machines. 
* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add
"INTSIZE64" CPP flag.
 2017-06-26 18:16:11 +02:00
Ludovic Courtès 11f0c4e871
gnu: lapack: Build with LAPACKE_WITH_TMG=ON. 
* gnu/packages/maths.scm (lapack)[arguments]: Pass
"-DLAPACKE_WITH_TMG=ON".
 2017-06-26 18:16:11 +02:00
Ludovic Courtès ef39a17717
gnu: lapack: Update to 3.7.1. 
* gnu/packages/maths.scm (lapack): Update to 3.7.1.
 2017-06-26 18:16:11 +02:00
Tobias Geerinckx-Rice c79d59b913
gnu: dovecot: Update to 2.2.31. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.31.
 2017-06-26 16:35:56 +02:00