5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
e059bdc9a7
gnu: r-tidyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
2017-10-17 20:58:24 +02:00
d8455fe146
gnu: r-tidyselect: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
2017-10-17 20:58:24 +02:00
c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
2017-10-17 20:58:24 +02:00
711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
2017-10-17 20:58:23 +02:00
767ad2f7ad
gnu: r-chron: Update to 2.3-51.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
2017-10-17 20:58:23 +02:00
dc6cb56dec
gnu: r-dplyr: Update to 0.7.4.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
2017-10-17 20:58:23 +02:00
6de897ac5a
gnu: Add r-ggdendro.
...
* gnu/packages/statistics.scm (r-ggdendro): New variable.
2017-10-11 10:02:08 +02:00
6048986c89
gnu: r-lme4: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
2017-09-28 22:00:44 +02:00
26cd4194ef
gnu: r-doparallel: Update to 1.0.11.
...
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
2017-09-28 22:00:44 +02:00
7147d8f7ad
gnu: r-checkmate: Update to 1.8.4.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
2017-09-28 22:00:44 +02:00
2c49184e2c
gnu: r-backports: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
2017-09-28 22:00:43 +02:00
1344deb937
gnu: r-minimal: Update to 3.4.2.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
2017-09-28 20:21:18 +02:00
91316f31d4
gnu: r-glmnet: Update to 2.0-13.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
2017-09-24 11:36:17 +02:00
d9400ee46a
gnu: r-segmented: Update to 0.5-2.2.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
2017-09-24 11:36:17 +02:00
29457c43bf
gnu: r-mgcv: Update to 1.8-22.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
2017-09-24 11:36:17 +02:00
2c67f96b1b
gnu: r-glmnet: Update to 2.0-12.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
2017-09-18 14:23:03 +02:00
0b2fc9836b
gnu: r-lambda-r: Update to 1.2.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
2017-09-18 14:23:03 +02:00
9f14fffea6
gnu: r-gridextra: Update to 2.3.
...
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
2017-09-18 14:23:02 +02:00
37c6a738f3
gnu: r-dplyr: Update to 0.7.3.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
2017-09-18 14:23:02 +02:00
b0c8cba485
gnu: r-crayon: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
2017-09-18 14:23:02 +02:00
ea008095c3
gnu: r-svglite: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
2017-09-18 14:23:02 +02:00
7904531e5b
gnu: r-mgcv: Update to 1.8-21.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
2017-09-18 14:23:02 +02:00
d9c65e5a9c
gnu: r-caret: Update to 6.0-77.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
2017-09-18 11:33:26 +02:00
9272144a88
gnu: r-rstudioapi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
2017-09-18 11:33:26 +02:00
0dc3b4d41e
gnu: r-openssl: Update to 0.9.7.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
2017-09-18 11:33:25 +02:00
8036caa75a
gnu: r-tidyr: Update to 0.7.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
2017-09-05 16:59:46 +02:00
31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
2017-09-05 16:59:45 +02:00
ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
c4a4ef39ed
gnu: Add r-tidyselect.
...
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
7d60652ebe
gnu: r-httr: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00
e3323e0707
gnu: r-commonmark: Update to 1.4.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01 15:11:51 +02:00
5d84369bda
gnu: r-ade4: Update to 1.7-8.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01 15:11:50 +02:00
fb10c923b3
gnu: r-tibble: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01 15:11:50 +02:00
edd5fd7208
gnu: r-rlang: Update to 0.1.2.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01 15:11:49 +02:00
5a00ef0950
gnu: r-knitr: Update to 1.17.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01 15:11:49 +02:00
3949aef601
gnu: r-bh: Update to 1.65.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01 15:11:49 +02:00
b93881b9c5
gnu: r-scales: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01 15:11:48 +02:00
2d99a31607
gnu: r-mgcv: Update to 1.8-19.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01 15:11:48 +02:00
fefe9f4753
gnu: r-matrix: Update to 1.2-11.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01 15:11:48 +02:00
caa4e796e4
gnu: Add r-dbplyr.
...
* gnu/packages/statistics.scm (r-dbplyr): New variable.
2017-08-31 18:24:51 +02:00
174fbd5f3b
gnu: r-minimal: Remove timestamp from man page.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
2017-08-28 15:51:05 +02:00
af9bb4cab8
gnu: pspp: Update to 1.0.1.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
2017-08-28 14:44:41 +03:00
bd3a184613
gnu: r-minimal: Do not compress serialized files.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.
Fixes <https://bugs.gnu.org/28157 >.
2017-08-22 16:24:24 +02:00
6be54a8751
gnu: Add rmath-standalone.
...
* gnu/packages/statistics.scm (rmath-standalone): New variable.
2017-08-22 16:24:24 +02:00
Tobias Geerinckx-Rice