guix-devel/guix/build-system
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
..
ant.scm guix: ant-build-system: Add #:test-include and #:test-exclude arguments. 2017-10-03 21:38:23 +02:00
asdf.scm build-system/asdf: Handle tests defined in external systems. 2017-05-16 15:18:16 +02:00
cargo.scm build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags. 2017-03-17 16:48:08 +01:00
cmake.scm build-system/cmake: Add support for cross compilation. 2017-05-30 16:52:55 +02:00
dub.scm gnu: Add dub-build-system. 2017-02-10 16:21:50 +01:00
emacs.scm build-system: emacs: Factorize include/exclude default arguments. 2017-06-08 19:45:27 +05:30
font.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
glib-or-gtk.scm build-system/glib-or-gtk: Don't generate 'icon-theme.cache'. 2015-09-11 20:24:30 +08:00
gnu.scm build-system/cmake: Add support for cross compilation. 2017-05-30 16:52:55 +02:00
go.scm build: Add the Go build system. 2017-10-12 21:22:40 -04:00
haskell.scm Move search path specifications to (guix search-paths). 2015-05-04 23:30:51 +02:00
meson.scm build-system: meson: Fix typo in variable name. 2017-09-26 19:58:26 +02:00
minify.scm build: Add minify build system. 2017-08-04 11:23:52 +02:00
ocaml.scm build-system: Add package-with-ocaml4.01. 2017-05-10 22:13:54 +02:00
perl.scm Move search path specifications to (guix search-paths). 2015-05-04 23:30:51 +02:00
python.scm build-system/python: 'package-with-explicit-python' uses 'package-mapping'. 2017-04-05 22:45:41 +02:00
r.scm Use HTTPS for bioconductor.org. 2017-10-21 17:43:40 +02:00
ruby.scm build: ruby: Rewrite build system to use gem archives. 2015-08-18 17:58:13 -04:00
texlive.scm build-system: texlive: Build union in configure phase. 2017-07-09 17:07:27 +02:00
trivial.scm packages: Implement grafts. 2014-11-02 21:22:12 +01:00
waf.scm Move search path specifications to (guix search-paths). 2015-05-04 23:30:51 +02:00