guix-devel/guix/scripts
Ricardo Wurmus d0bd632f89 import: Add Bioconductor importer and updater.
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
2016-01-20 12:41:28 +01:00
..
container scripts: container: Fix 'exec' command line parsing. 2015-11-03 18:05:43 -05:00
import import: Add Bioconductor importer and updater. 2016-01-20 12:41:28 +01:00
archive.scm guix archive: Add '--extract'. 2015-10-19 10:10:47 +02:00
authenticate.scm
build.scm guix build: Add '--keep-going'. 2016-01-19 21:59:58 +01:00
challenge.scm substitute: 'lookup-narinfos' returns exactly a list of narinfos. 2015-10-28 12:04:03 +01:00
container.scm scripts: Add 'container' subcommand. 2015-11-01 18:20:04 -05:00
download.scm guix download: Fail when more than one URL is passed. 2015-11-23 17:48:35 +01:00
edit.scm edit: Don't assume that an emacs daemon is running. 2015-12-06 17:23:25 +01:00
environment.scm environment: Set build options early on. 2015-11-28 21:53:51 +01:00
gc.scm guix gc: Error out when extra arguments are passed. 2015-11-11 23:29:20 +01:00
graph.scm graph: %BAG-WITH-ORIGINS-NODE-TYPE includes the origin's guile. 2016-01-02 22:25:41 +01:00
hash.scm Add (guix scripts). 2015-09-18 21:42:06 +03:00
import.scm import: Add 'cran' importer. 2015-08-31 15:39:34 +02:00
lint.scm lint: cve: Catch host name lookup errors. 2016-01-06 15:54:12 +01:00
offload.scm offload: Use gzip instead of xz for compression on the master. 2015-09-25 22:35:35 +02:00
package.scm guix package: Allow multiple '--search' flags. 2016-01-05 00:28:42 +01:00
publish.scm publish: Fix file descriptor leak. 2015-10-06 23:51:04 +02:00
pull.scm utils: Add 'switch-symlinks', moved from (guix ui). 2015-10-27 00:01:20 +01:00
refresh.scm import: Add Bioconductor importer and updater. 2016-01-20 12:41:28 +01:00
size.scm store: Use the daemon's substitute URLs by default. 2015-10-28 15:31:44 +01:00
substitute.scm substitute: Warn upon store prefix mismatches. 2015-11-28 00:02:23 +01:00
system.scm Move <boot-parameters> to (gnu system). 2016-01-16 13:02:21 +03:00