guix-devel/guix/import
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
..
cabal.scm packages: Use '@' in package record printers. 2016-01-28 16:31:38 +01:00
cpan.scm import: cpan: Load (gnu packages perl) lazily. 2017-10-10 23:12:04 +02:00
cran.scm Use HTTPS for bioconductor.org. 2017-10-21 17:43:40 +02:00
crate.scm build-system: cargo: Handle Cargo.lock file not present. 2017-01-01 18:20:52 +01:00
elpa.scm ui: Rename '_' to 'G_'. 2017-05-03 16:16:17 +02:00
gem.scm import: json: Silence json-fetch output. 2016-12-12 22:22:02 -06:00
github.scm import: github: Better tolerate unexpected file extensions. 2017-01-28 00:38:20 +01:00
gnome.scm upstream: Add new GNOME updater. 2017-09-26 00:35:06 +02:00
gnu.scm gnu-maintenance: Replace 'find-packages' with 'find-package' (singular). 2016-06-08 19:07:58 +02:00
hackage.scm import: hackage: Handle unknown packages gracefully. 2017-02-09 19:36:08 +01:00
json.scm import: json: Explicitly ask for JSON data. 2017-02-09 19:36:04 +01:00
print.scm import: Add package->code. 2017-09-28 13:10:10 +02:00
pypi.scm import: pypi: Remove unneeded import. 2017-10-10 23:12:03 +02:00
snix.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
stackage.scm import: stackage: Avoid using (guix ui) in importer code. 2017-02-14 08:38:45 +01:00
texlive.scm guix: Add texlive importer. 2017-06-15 17:03:19 +02:00
utils.scm import: Add generic data to package converter. 2017-09-28 13:10:11 +02:00