guix-devel/guix
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages.
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
..
build syscalls: Adjust 'clone' to Guile 2.2. 2017-03-15 15:19:53 +01:00
build-system build-system/cargo: Export %cargo-build-system-modules. 2017-03-03 12:06:11 +01:00
import gnu: r: Do not build recommended packages. 2017-03-17 10:14:02 +01:00
scripts pack: Allow for "-S /opt/foo=". 2017-03-16 22:50:15 +01:00
tests tests: Move HTTP server to (guix tests http). 2016-11-16 18:00:41 +01:00
base16.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
base32.scm
base64.scm
build-system.scm
combinators.scm Add (guix memoization). 2017-01-28 18:55:20 +01:00
config.scm.in
cpio.scm
cve.scm
cvs-download.scm
derivations.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
docker.scm pack: Honor symlinks in the Docker back-end. 2017-03-16 22:50:15 +01:00
download.scm download: Update the Savannah mirror list. 2017-03-08 23:42:53 +01:00
elf.scm
ftp-client.scm Use (ice-9 binary-ports) instead of (rnrs io ports). 2016-10-19 15:54:10 +02:00
gcrypt.scm
gexp.scm gexp: Add '=>' syntax to import computed modules. 2017-03-16 22:50:14 +01:00
git-download.scm git-download: Add 'git-predicate'. 2017-02-09 13:56:54 -06:00
gnu-maintenance.scm gnu-maintenance: 'gnu-package?' uses 'eq?' memoization. 2017-01-28 18:55:20 +01:00
gnupg.scm gnupg: Honor $GUIX_GPG_COMMAND and default to 'gpg'. 2016-09-06 11:12:11 +02:00
grafts.scm grafts: Do not pull derivation outputs not depended on. 2017-01-25 11:04:25 +01:00
graph.scm graph: Add d3js backend. 2016-12-14 21:58:32 +01:00
hash.scm Use (ice-9 binary-ports) instead of (rnrs io ports). 2016-10-19 15:54:10 +02:00
hg-download.scm
http-client.scm http-client: Provide 'User-Agent' header by default. 2017-01-13 18:24:19 +01:00
licenses.scm licenses: Add wtfpl2. 2017-01-13 14:13:01 -05:00
memoization.scm memoization: Micro-optimize code produced by 'define-cache-procedure'. 2017-03-16 22:50:15 +01:00
modules.scm Use 'mlambda' instead of 'memoize'. 2017-01-28 18:55:20 +01:00
monad-repl.scm
monads.scm
nar.scm
packages.scm packages: Remove 'define-memoized/v' and use 'mlambdaq' instead. 2017-01-28 18:55:20 +01:00
pk-crypto.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
pki.scm Use (ice-9 binary-ports) instead of (rnrs io ports). 2016-10-19 15:54:10 +02:00
profiles.scm profiles: gtk-im-modules: Fix for gtk3. 2017-02-08 20:12:20 +08:00
records.scm
scripts.scm
search-paths.scm
serialization.scm store: Add 'add-data-to-store'. 2017-01-30 10:52:45 +01:00
sets.scm
ssh.scm ssh: 'retrieve-files' detects remote export failures. 2016-12-31 18:35:29 +01:00
store.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
svn-download.scm
tests.scm Use (ice-9 binary-ports) instead of (rnrs io ports). 2016-10-19 15:54:10 +02:00
ui.scm ui: Don't use '%default-port-encoding' to set the encoding of string ports. 2017-03-08 23:42:53 +01:00
upstream.scm upstream: Avoid '_' as a pattern variable in 'match'. 2017-03-14 11:19:21 +01:00
utils.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
zlib.scm zlib: Don't rely on EBADF being ignored by 'fport_close'. 2017-03-15 15:19:53 +01:00