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Julien Lepiller 564cf93f2a
gnu: ocaml: Update to 4.7.0. 
Update ocaml to the latest version and fixes dependent packages by
updating them or by adding new inputs, such as ocaml-num and ocamlbuild,
that were removed from the core ocaml package. Rename packages that
cannot be built with the new compiler with an ocaml4.02 prefix. Add
ocaml4.02 dependencies.

* gnu/packages/ocaml.scm (ocaml): Update to 4.7.0.
(ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip)
(ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest)
(ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree)
(ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned)
(ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult)
(ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner)
(ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools)
(ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log)
(ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos)
(ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf)
(ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake)
(ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq)
(ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages.
(opam): Update to 2.0.0.
(camlp4): Update to 4.07+1.
(camlp5): Update to 7.06.
(hevea): Update to 2.32.
(coq)[inputs]: Add ocaml-num.
(emacs-tuareg): Update to 2.2.0.
(ocaml-menhir)[native-inputs]: Add ocamlbuild.
(ocaml-lablgtk): Update to 2.18.6.
(unison)[inputs]: Use ocaml-4.02.
(ocaml-findlib): Update to 1.8.0.
(ocaml-ounit)[native-inputs]: Add ocamlbuild.
(ocamlmod): Update to 0.0.9.
(ocaml-frontc)[arguments]: Use ocaml-4.02.
(ocaml-qcheck)[native-inputs]: Add ocamlbuild.
(ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild.
(ocaml-stringext)[native-inputs]: Add ocamlbuild.
(ocaml-bisect): Update to 1.3.1.
(ocaml4.01-bisect): Downgrade to 1.3.
(ocaml-bitstring): Update to 3.1.0.
(ocaml-topkg)[native-inputs]: Add ocamlbuild.
(ocaml-rresult)[native-inputs]: Add ocamlbuild.
(ocaml-sqlite3)[native-inputs]: Add ocamlbuild.
(ocaml-csv)[native-inputs]: Add ocamlbuild.
(ocaml-mtime)[native-inputs]: Add ocamlbuild.
(ocaml-cmdliner)[native-inputs]: Add ocamlbuild.
(ocaml-fmt)[native-inputs]: Add ocamlbuild.
(ocaml-astring)[native-inputs]: Add ocamlbuild.
(ocaml-alcotest)[native-inputs]: Add ocamlbuild.
(ocaml-ppx-tools)[native-inputs]: Add ocamlbuild.
(ocaml-react)[native-inputs]: Add ocamlbuild.
(ocaml-ssl)[arguments]: Return #t in phases.
(ocaml-lwt): Update to 4.1.0.
(ocaml-logs)[native-inputs]: Add ocamlbuild.
(ocaml-fpath)[native-inputs]: Add ocamlbuild.
(ocaml-bos)[native-inputs]: Add ocamlbuild.
(ocaml-xmlm): Update to 1.3.0.
(ocaml-ulex): Update to 1.2.0.
(ocaml-uchar)[native-inputs]: Add ocamlbuild.
(ocaml-uutf): Update to 1.0.1.
(ocaml-jsonm): Update to 1.0.1.
(ocaml-ocurl): Update to 0.8.2.
(ocaml-base64)[native-inputs]: Add ocamlbuild.
(ocamlify)[native-inputs]: Use ocaml-4.02.
(omake): Update to 0.10.3.
(ocaml-batteries): Update to 2.9.0.
(ocaml-pcre)[native-inputs]: Add ocamlbuild.
(ocaml-expect): Update 0.0.6.
(ocaml4.02-fileutils): Update to 0.5.3.
(ocaml-oasis): Update 0.4.11.
(ocaml-js-build-tools)[native-inputs]: Add ocamlbuild.
(ocaml-bin-prot): Rename to ocaml4.02-bin-prot.
(ocaml-fieldslib): Rename to ocaml4.02-fieldslib.
(ocaml-ppx-core): Rename to ocaml4.02-ppx-core.
(ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp.
(ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver.
(ocaml-cppo): Update to 1.6.5.
(ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving.
(ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv.
(ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test.
(ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench.
(ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare.
(ocaml-sexplib): Rename to ocaml4.02-sexplib.
(ocaml-typerep): Rename to ocaml4.02-typerep.
(ocaml-variantslib): Rename to ocaml4.02-variantslib.
(ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv.
(ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv.
(ocaml-ppx-here): Rename to ocaml4.02-ppx-here.
(ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert.
(ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate.
(ocaml-ppx-let): Rename to ocaml4.02-ppx-let.
(ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv.
(ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value.
(ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang.
(ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot.
(ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail.
(ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf.
(ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message.
(ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv.
(ocaml-re): Update to 1.8.0.
(ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect.
(ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane.
(ocaml-core-kernel): Rename to ocaml4.02-core-kernel.
(ocaml-async-kernel): Rename to ocaml4.02-async-kernel.
(ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel.
(ocaml-core): Rename to ocaml4.02-core.
(ocaml-async-unix): Rename to ocaml4.02-async-unix.
(ocaml-async-extra): Rename to ocaml4.02-async-extra.
(ocaml-async): Rename to ocaml4.02-async.
(ocaml-ocplib-endian)[native-inputs]: Update to 1.0.
(ocaml-cstruct): Rename to ocaml4.02-cstruct.
(ocaml-hex): Rename to ocaml4.02-hex.
(ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm.
(ocaml-uri): Rename to ocaml4.02-uri.
(optcomp): Use ocaml-4.02.
(ocaml-piqilib): Update to 0.6.14.
(ocaml-uuidm)[native-inputs]: Add ocamlbuild.
(ocaml-graph): Update to 1.8.8.
(ocaml-piqi): Update to 0.7.6.
(bap): Update to 1.3.0.
(ocaml-camomile): Update to 1.0.1.
(ocaml-jbuilder): Use ocaml-4.02.
(ocaml-lambda-term): Update to 1.13.
(ocaml-utop): Update to 2.2.0.
(ocaml-integers)[native-inputs]: Add ocamlbuild.
(ocaml-ctypes): Update to 0.14.0.
(ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild.
(ocaml-tsdl)[native-inputs]: Add ocamlbuild.
* gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02.
* gnu/packages/maths.scm (cubicle): Update to 1.1.2.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
Update patch.
* guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib)
(package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
 		2018-11-18 18:51:08 +01:00
..
build build-system/ocaml: Use invoke and return #t. 2018-11-18 18:40:53 +01:00
build-system gnu: ocaml: Update to 4.7.0. 2018-11-18 18:51:08 +01:00
import guix: Update to Bioconductor 3.8. 2018-11-06 18:21:24 +01:00
scripts guix system: Invoking 'guix system init' twice keeps timestamps zeroed. 2018-11-11 23:53:29 +01:00
store deduplication: Restore directory mtime and permissions after deduplication. 2018-11-13 14:59:46 +01:00
tests tests: Support multiple HTTP server instances. 2017-10-12 23:47:48 +02:00
base16.scm utils: Move base16 procedures to (guix base16). 2017-03-16 22:50:14 +01:00
base32.scm base32: Export the base32 charsets. 2017-07-21 17:03:24 +02:00
base64.scm base64: Turn into a regular Guile module. 2017-05-25 14:25:17 +02:00
build-system.scm
…
cache.scm cache: Work around 'time-monotonic' bug in Guile 2.2.2. 2017-04-22 14:42:15 +02:00
channels.scm channels: Add 'channel-instances->derivation'. 2018-09-21 17:04:38 +02:00
ci.scm ci: Add procedures to access evaluations. 2018-11-10 23:33:46 +01:00
combinators.scm Add (guix memoization). 2017-01-28 18:55:20 +01:00
config.scm.in build: Remove checks for 'nix-instantiate'. 2018-06-18 23:19:51 +02:00
cpio.scm
…
cve.scm cve: Update feed URL. 2018-08-26 01:47:40 +02:00
cvs-download.scm download: Download a nar when a VCS checkout fails. 2017-10-19 23:21:49 +02:00
derivations.scm Switch to Guile-Gcrypt. 2018-09-04 17:25:11 +02:00
describe.scm Add 'guix describe'. 2018-09-07 11:40:22 +02:00
discovery.scm discovery: Add 'scheme-modules*'. 2018-09-02 16:43:10 +02:00
docker.scm pack: Docker backend now honors '--localstatedir'. 2018-11-06 23:21:24 +01:00
download.scm download: Access content-addressed mirrors over HTTPS. 2018-11-14 21:34:08 +01:00
elf.scm
…
ftp-client.scm download: Pass the timeout to 'ftp-retr'. 2017-11-14 23:46:53 +01:00
gexp.scm store: Add a functional object cache and use it in 'lower-object'. 2018-11-12 23:37:13 +01:00
git-download.scm git-download: Don't assume the working directory is the parent of ".git". 2018-09-26 00:33:00 +02:00
git.scm git: Choose a saner default for '%repository-cache-directory'. 2018-09-17 22:10:31 +02:00
glob.scm glob: Add an extra glob pattern compilation stage. 2018-03-18 22:57:17 +01:00
gnu-maintenance.scm gnu-maintenance: Base kernel.org updater on HTML directory listings. 2018-11-10 23:33:46 +01:00
gnupg.scm gnupg: Change default keyserver. 2018-09-25 18:45:50 +02:00
grafts.scm store: Add a functional object cache and use it in 'lower-object'. 2018-11-12 23:37:13 +01:00
graph.scm Revert "graph: Provide access to the package record in the emit functions." 2017-08-24 23:55:51 +02:00
hg-download.scm download: Download a nar when a VCS checkout fails. 2017-10-19 23:21:49 +02:00
http-client.scm Switch to Guile-Gcrypt. 2018-09-04 17:25:11 +02:00
i18n.scm ui: Introduce (guix i18n). 2017-11-08 22:31:58 +01:00
inferior.scm inferior: Add 'inferior-for-channels'. 2018-09-21 17:04:38 +02:00
licenses.scm Correct name and Email for ng0. 2018-03-20 17:17:58 +01:00
man-db.scm profiles: Use 'with-extensions'. 2018-06-01 15:21:28 +02:00
memoization.scm memoization: Add 'invalidate-memoization!. 2017-12-13 23:11:53 +01:00
modules.scm modules: Report the search path in &missing-dependency-error. 2018-04-08 17:41:08 +02:00
monad-repl.scm
…
monads.scm monads: Add a template and specialization mechanism for monadic procedures. 2017-05-02 23:41:13 +02:00
nar.scm nar: Access the database instead of connecting to the daemon. 2018-11-13 14:59:45 +01:00
packages.scm gexp: 'imported-files' no longer creates a derivation by default. 2018-07-19 11:48:04 +02:00
pki.scm Switch to Guile-Gcrypt. 2018-09-04 17:25:11 +02:00
profiles.scm profiles: Fix typo in exports. 2018-10-26 20:05:21 +02:00
profiling.scm Add (guix profiling). 2017-12-12 18:11:22 +01:00
progress.scm progress: Do not display the last 0B transfer when size is unknown. 2018-11-16 14:53:44 +01:00
records.scm records: Adjust to test changes in 'record-abi-mismatch-error'. 2018-08-31 17:26:56 +02:00
scripts.scm scripts: Suggest running 'guix gc' when we're short on disk space. 2018-10-23 01:04:39 +02:00
search-paths.scm search-paths: Add 'set-search-paths'. 2018-05-10 14:53:57 +02:00
self.scm self: Install shell completion files. 2018-11-06 17:00:02 +01:00
serialization.scm serialization: Remove redundancy in 'write-file'. 2018-09-23 23:34:16 +02:00
sets.scm
…
ssh.scm ssh: Honor the SOCKET-NAME argument of connect-to-remote-daemon. 2018-11-05 21:28:59 -05:00
status.scm ui: Fix port-buffering with guile@2.0. 2018-10-16 17:12:09 -05:00
store.scm store: Add a functional object cache and use it in 'lower-object'. 2018-11-12 23:37:13 +01:00
svn-download.scm guix: Add download-svn-to-store. 2017-06-15 17:03:14 +02:00
tests.scm tests: Check file canonicalization for 'restore-file-set'. 2018-11-13 14:59:46 +01:00
ui.scm Add (guix status) and use it for pretty colored output. 2018-09-27 23:21:53 +02:00
upstream.scm discovery: Remove dependency on (guix ui). 2018-04-08 17:48:33 +02:00
utils.scm Revert "guix: Compress and decompress xz archives in parallel." 2018-07-22 18:01:35 +02:00
workers.scm workers: Display backtrace in pre-unwind handler. 2017-11-17 10:47:56 +01:00
zlib.scm zlib: Fix race condition when closing gzip ports. 2017-11-19 23:09:01 +01:00