guix-devel/gnu/packages
Ricardo Wurmus fed7200862
gnu: deeptools: Update to 2.5.1.
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
2017-07-09 17:07:27 +02:00
..
aux-files gnu: linux-libre: Update to 4.12. 2017-07-04 04:24:58 -04:00
bootstrap
patches gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776. 2017-07-09 02:25:27 -04:00
abduco.scm
abiword.scm gnu: Remove libwmf. 2017-06-24 23:10:28 -04:00
accessibility.scm gnu: Add florence. 2017-05-27 13:35:02 -04:00
acct.scm
acl.scm
admin.scm gnu: shadow: Correctly match the system type. 2017-07-07 00:44:55 +02:00
adns.scm gnu: c-ares: Update to 1.13.0 [fixes CVE-2017-1000381]. 2017-06-20 19:04:06 +02:00
aidc.scm
algebra.scm gnu: giac-xcas: Use texlive-tiny. 2017-06-30 13:57:41 +02:00
android.scm gnu: Add git-repo. 2017-06-04 11:22:26 +02:00
animation.scm gnu: synfigstudio: Fix crash on opening files. 2017-05-31 08:27:45 +02:00
anthy.scm
apl.scm
apr.scm
aspell.scm gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR. 2017-05-20 10:16:14 +02:00
assembly.scm gnu: nasm: Update to 2.13.01. 2017-06-20 22:16:45 +02:00
astronomy.scm gnu: stellarium: Update to 0.16.0. 2017-06-26 22:36:31 +02:00
attr.scm
audio.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
augeas.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
backup.scm Revert "gnu: borg: Update to 1.1.0b5." 2017-06-16 18:27:15 +02:00
base.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
bash.scm gnu: bash-completion: Update to 2.6. 2017-07-06 01:28:05 +02:00
bdw-gc.scm
benchmark.scm gnu: fio: Update to 2.20. 2017-05-21 16:33:42 +02:00
bioinformatics.scm gnu: deeptools: Update to 2.5.1. 2017-07-09 17:07:27 +02:00
bison.scm
bittorrent.scm gnu: aria2: Update to 1.32.0. 2017-06-28 11:20:11 +03:00
boost.scm
bootloaders.scm gnu: grub: Disable a flaky test. 2017-06-25 09:47:24 -04:00
bootstrap.scm
build-tools.scm
busybox.scm gnu: busybox: Fix indentation. 2017-06-21 10:13:39 +03:00
c.scm
calcurse.scm gnu: calcurse: Upgrade to 4.2.2. 2017-06-14 22:16:11 -05:00
calendar.scm
ccache.scm
cdrom.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
certs.scm gnu: nss, nss-certs: Update to 3.31. 2017-06-12 21:31:12 +02:00
check.scm gnu: cppcheck: Update to 1.79. 2017-06-16 17:57:01 +02:00
chez.scm
ci.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
cmake.scm
code.scm gnu: the-silver-searcher: Update to 2.0.0. 2017-06-08 11:27:51 +02:00
commencement.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
compression.scm gnu: zstd: Update to 1.3.0. 2017-07-06 01:28:05 +02:00
compton.scm
conkeror.scm
conky.scm
connman.scm gnu: efl: Update to 1.19.1. 2017-06-19 08:41:53 +03:00
cook.scm
cpio.scm
cpp.scm gnu: Add libzen. 2017-05-31 17:08:45 +02:00
cppi.scm
cross-base.scm gnu: cross-base: Turn '%xgcc' into a macro. 2017-05-29 13:46:25 +02:00
crypto.scm gnu: tomb: Upgrade to 2.4. 2017-06-15 00:40:35 -05:00
cryptsetup.scm gnu: cryptsetup: Update to 1.7.5. 2017-05-12 13:47:26 +02:00
cups.scm
curl.scm gnu: curl: Update replacement to 7.54.1 [fixes CVE-2017-9502]. 2017-06-14 13:26:51 -04:00
cyrus-sasl.scm
databases.scm gnu: perl-dbd-mysql: Update to 4.043. 2017-07-07 20:34:52 -04:00
datamash.scm
datastructures.scm gnu: liburcu: Update to 0.10.0. 2017-06-15 10:34:22 +02:00
dav.scm gnu: vdirsyncer: Update to 0.16.0. 2017-07-02 09:17:16 -04:00
dc.scm
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm gnu: translate-shell: Update to 0.9.6.4. 2017-06-28 09:36:02 +03:00
direct-connect.scm
disk.scm gnu: Add f3. 2017-05-09 20:08:30 +02:00
display-managers.scm
django.scm gnu: Add pootle. 2017-05-11 21:58:41 +02:00
djvu.scm
dns.scm gnu: bind: Update to 9.11.1-P2 [fixes CVE-2017-{3142,3143}]. 2017-06-30 11:59:28 -04:00
docbook.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
docker.scm
documentation.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
dunst.scm
dvtm.scm
ebook.scm gnu: Update calibre to 3.0.0. 2017-06-22 00:07:58 +02:00
ed.scm
education.scm gnu: gcompris: Update to 17.05. 2017-07-05 12:40:40 +03:00
electronics.scm gnu: Add pulseview. 2017-06-24 08:07:15 +02:00
elf.scm gnu: elfutils: Update to 0.169. 2017-05-11 00:08:20 -04:00
elixir.scm
emacs.scm gnu: emacs-exwm-x: Update to 1.6.2. 2017-07-04 22:03:15 +02:00
embedded.scm gnu: propeller-gcc: Default to version 4. 2017-06-21 22:47:39 +02:00
enchant.scm
engineering.scm gnu: Add adms. 2017-06-24 09:18:56 +02:00
enlightenment.scm gnu: efl: Add missing inputs. 2017-06-21 12:31:10 +03:00
entr.scm
erlang.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: bitcoin-core: Update to 0.14.2. 2017-06-18 18:22:06 +02:00
firmware.scm gnu: ovmf: Fix build on x86_64. 2017-07-02 13:13:35 +03:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-gnu-unifont: Update to 10.0.04. 2017-07-08 23:49:29 +03:00
fontutils.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
fpga.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
freedesktop.scm gnu: Move desktop-file-utils to (gnu packages freedesktop). 2017-06-15 09:53:27 +02:00
freeipmi.scm gnu: freeipmi: Remove readline from inputs. 2017-07-06 09:45:52 +03:00
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: python-xsge: Fix source URL. 2017-06-27 20:28:06 -04:00
games.scm gnu: cdogs-sdl: Update to 0.6.5. 2017-07-04 00:51:52 +02:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc@6: Update to 6.4.0. 2017-07-05 08:31:46 +03:00
gd.scm
gdb.scm gnu: gdb: Update to 8.0. 2017-06-05 23:52:41 +02:00
geo.scm gnu: gnome-maps: Update to 3.24.3. 2017-05-25 00:53:45 +02:00
gettext.scm gnu: po4a: Use texlive-tiny. 2017-06-30 13:57:41 +02:00
gforth.scm
ghostscript.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
gimp.scm gnu: gimp: Update to 2.8.22 [fixes CVE-2007-3126]. 2017-05-12 21:44:14 -04:00
gkrellm.scm
gl.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
glib.scm gnu: python-pyobject: Update to 3.24.1. 2017-05-25 12:42:50 -04:00
gnome.scm gnu: gcr: Enable working tests. 2017-07-03 09:52:59 -04:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: gnurl: Update to 7.54.1. 2017-06-17 18:15:36 -04:00
gnupg.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
gnustep.scm gnu: Add gnustep-make. 2017-05-08 17:46:58 -04:00
gnuzilla.scm gnu: icecat: Add more fixes from upstream mozilla-esr52. 2017-06-28 06:09:59 -04:00
gobby.scm
golang.scm gnu: go@1.8: Update to 1.8.3 [fixes CVE-2017-8932]. 2017-05-31 11:54:57 -04:00
gperf.scm
gprolog.scm
gps.scm
graphics.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
graphviz.scm
groff.scm
gsasl.scm gnu: libntlm: Update to 1.4. 2017-05-30 17:57:48 +02:00
gstreamer.scm gnu: gstreamer: Update to 1.12.1. 2017-06-20 19:16:53 +02:00
gtk.scm gnu: Switch guile-cairo and dependents to Guile 2.2 again. 2017-07-02 22:52:30 +02:00
guile-wm.scm
guile.scm gnu: artanis: Update source URL. 2017-07-06 00:02:41 +02:00
gv.scm
gxmessage.scm
haskell.scm gnu: ghc-x11: Update to 1.8. 2017-06-21 09:35:17 +02:00
hexedit.scm gnu: Add ht. 2017-06-26 16:35:55 +02:00
hugs.scm
hurd.scm
ibus.scm gnu: ibus: Update to 1.5.16. 2017-07-04 00:51:52 +02:00
icu4c.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
idris.scm
idutils.scm
image-processing.scm gnu: Remove old vtk module dependence in image-processing.scm. 2017-06-03 18:19:07 +02:00
image-viewers.scm gnu: catimg: Update to 2.3.2. 2017-07-07 15:24:14 +02:00
image.scm gnu: libjpeg-turbo: Update to 1.5.2. 2017-07-09 15:12:53 +02:00
imagemagick.scm gnu: imagemagick: Update to 6.9.8-10. 2017-06-25 09:47:24 -04:00
indent.scm
inklingreader.scm
inkscape.scm
irc.scm gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}]. 2017-07-07 12:36:00 -04:00
iso-codes.scm
java.scm gnu: Add java-slf4j-api. 2017-07-09 16:57:04 +02:00
javascript.scm gnu: Add js-respond. 2017-06-23 08:14:41 +02:00
jemalloc.scm
jrnl.scm
julia.scm gnu: julia: Add support for aarch64-linux. 2017-07-05 20:26:46 +03:00
kde-frameworks.scm gnu: kde-frameworks: Fix 'license' fields. 2017-06-27 22:41:31 +02:00
kde.scm gnu: kdevelop: Update to 5.1.1. 2017-06-15 09:34:16 +02:00
kerberos.scm
key-mon.scm
kodi.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
language.scm
ld-wrapper.in
ldc.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm gnu: libffcall: Update to 1.13. 2017-06-24 23:48:20 +03:00
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libreoffice: Update to 5.3.2.2. 2017-06-30 16:11:45 -04:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libupnp.scm
libusb.scm gnu: Add java-usb4java. 2017-05-15 22:33:13 +02:00
lighting.scm gnu: ola: Update to 0.10.4. 2017-06-16 17:57:03 +02:00
linux.scm gnu: rdma-core: Update to 14. 2017-07-07 15:24:14 +02:00
lirc.scm gnu: lirc: Fix building on Ubuntu. 2017-06-26 16:35:56 +02:00
lisp.scm gnu: Add uglify-js. 2017-06-01 23:32:23 +02:00
llvm.scm gnu: Add LLVM, CLANG 3.9.1. 2017-05-10 15:34:59 +02:00
logging.scm gnu: Add multitail. 2017-05-26 00:05:20 +02:00
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: lxde-common: Provide 'startlxde' with the 'lxsession' file name. 2017-05-11 23:31:28 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: Add ocaml4.01-mcl. 2017-05-10 22:13:55 +02:00
mail.scm gnu: alpine: Use new URL. 2017-07-05 00:24:02 +02:00
make-bootstrap.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
man.scm gnu: Move lynx to web-browsers.scm. 2017-05-08 15:16:24 -04:00
markup.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
marst.scm
mate.scm gnu: mate-menus: Update to 1.18.0. 2017-06-11 18:46:02 -04:00
maths.scm gnu: wxmaxima: Update to 17.05.0. 2017-07-08 17:05:55 -04:00
mc.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
mcrypt.scm
mes.scm gnu: mes: Update to 0.8. 2017-06-29 18:11:34 +02:00
messaging.scm gnu: gajim: Update to 0.16.8. 2017-07-04 23:07:15 +05:30
mg.scm
microcom.scm
mingw.scm
moe.scm gnu: moe: Update to 1.9. 2017-06-28 22:54:14 -05:00
monitoring.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
mono.scm
moreutils.scm
mp3.scm gnu: mpg123: Update to 1.25.0. 2017-06-28 11:21:45 -04:00
mpd.scm gnu: mpd: Build with the default GCC. 2017-06-21 15:15:07 -04:00
mpi.scm gnu: hwloc: Add "lib" and "debug" outputs. 2017-06-30 18:44:41 +02:00
mtools.scm gnu: exfat-tools: Update to 1.2.7. 2017-06-05 13:51:15 +02:00
multiprecision.scm
music.scm gnu: beets: Update to 1.4.5. 2017-07-02 11:35:04 -04:00
musl.scm
nano.scm gnu: nano: Update to 2.8.5. 2017-06-25 15:49:56 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: Add thc-ipv6. 2017-06-26 14:50:02 -04:00
nfs.scm gnu: nfs-utils: Adjust indentation. 2017-05-08 19:16:13 -04:00
nickle.scm
nim.scm
ninja.scm
node.scm gnu: node: Update to 8.1.2. 2017-06-29 15:21:18 +02:00
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: coq: Add search-paths for coq libraries. 2017-06-06 21:10:09 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm gnu: openldap: Fix CVE-2017-9287. 2017-05-30 18:15:23 -04:00
openstack.scm gnu: python-hacking: Update to 0.13.0. 2017-06-21 21:58:37 +02:00
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update snapshot. 2017-06-05 01:42:38 +02:00
parallel.scm gnu: hwloc: Add "lib" and "debug" outputs. 2017-06-30 18:44:41 +02:00
password-utils.scm gnu: Add pass-git-helper. 2017-06-26 02:13:10 +05:30
patchutils.scm
pciutils.scm
pcre.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
pdf.scm gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776. 2017-07-09 02:25:27 -04:00
pem.scm
perl-web.scm
perl.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
photo.scm gnu: darktable: Limit supported platforms. 2017-06-28 15:36:49 +03:00
php.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
pkg-config.scm
plotutils.scm gnu: Switch guile-cairo and dependents to Guile 2.2 again. 2017-07-02 22:52:30 +02:00
polkit.scm
popt.scm
pretty-print.scm gnu: a2ps: Build reproducibly. 2017-06-21 16:33:51 +02:00
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pv.scm gnu: pv: Use HTTPS. 2017-05-14 14:49:10 +02:00
python.scm gnu: python-pyopenssl: Fix test failure on 32-bit platforms. 2017-07-07 18:43:16 +02:00
qemu.scm gnu: libvirt: Update to 3.5.0. 2017-07-06 01:28:05 +02:00
qt.scm gnu: qt: Update to 5.9.1. 2017-07-04 08:55:00 +03:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm gnu: raptor2: Fix heap overflow bug. 2017-06-09 01:16:55 +02:00
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2017-07-01. 2017-07-04 02:52:25 +02:00
rrdtool.scm
rsync.scm
ruby.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
rush.scm
rust.scm gnu: rustc: Enable tests. 2017-06-20 07:18:01 +02:00
samba.scm gnu: samba: Update to 4.6.4 [security fixes]. 2017-05-24 16:39:31 +02:00
sawfish.scm
scanner.scm gnu: sane-backends-minimal: Run most tests. 2017-05-24 22:54:39 +02:00
scheme.scm gnu: mit-scheme: Remove aarch64-linux from supported-systems. 2017-06-26 13:13:09 +03:00
screen.scm gnu: screen: Update to 4.6.0. 2017-06-28 22:59:41 -05:00
scribus.scm
scsi.scm
sdcc.scm
sdl.scm
search.scm
security-token.scm gnu: pcsc-lite: Update to 1.8.22. 2017-06-18 18:22:07 +02:00
selinux.scm gnu: libselinux: Propagate libsepol and pcre. 2017-06-15 02:47:45 -04:00
serialization.scm gnu: Add nlohmann-json-cpp. 2017-06-30 12:43:40 -04:00
serveez.scm
shells.scm gnu: fish-guix: Update home page. 2017-06-18 17:20:53 +02:00
shellutils.scm
simh.scm
skarnet.scm
skribilo.scm gnu: Switch guile-cairo and dependents to Guile 2.2 again. 2017-07-02 22:52:30 +02:00
slang.scm
smalltalk.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
speech.scm
spice.scm
ssh.scm gnu: guile-ssh: Close RREPL channel ports before they are finalized. 2017-06-13 23:22:19 +02:00
sssd.scm gnu: bind: Rename variable to 'isc-bind'. 2017-05-16 00:00:03 +02:00
stalonetray.scm
statistics.scm gnu: r-spams: Update to 2.6-2017-03-22. 2017-06-29 10:02:58 +03:00
storage.scm
suckless.scm
swig.scm
sync.scm
syndication.scm
synergy.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
task-management.scm
tbb.scm
tcl.scm
telephony.scm gnu: osip: Fix CVE-2017-7853. 2017-06-14 13:16:21 -04:00
terminals.scm gnu: asciinema: Update to 1.4.0. 2017-05-29 22:37:34 +05:30
tex.scm gnu: Add texlive-tex-texinfo. 2017-06-29 01:54:34 +02:00
texinfo.scm
text-editors.scm gnu: Add e3. 2017-05-13 00:03:46 +02:00
textutils.scm gnu: Add dos2unix. 2017-06-20 19:50:27 -04:00
time.scm
tls.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
tmux.scm gnu: tmux: Update to 2.5. 2017-07-05 00:24:02 +02:00
tor.scm gnu: tor: Update to 0.3.0.9 [fixes CVE-2017-0377]. 2017-07-01 00:20:53 +02:00
tryton.scm gnu: Add tryton. 2017-05-27 18:41:13 +05:30
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.0.20170509. 2017-06-18 18:22:06 +02:00
uucp.scm
valgrind.scm
version-control.scm gnu: Add java-jgit-4.2. 2017-07-09 16:57:05 +02:00
video.scm gnu: youtube-dl: Update to 2017.07.09. 2017-07-09 15:58:35 +02:00
vim.scm gnu: vim: Update to 8.0.0600. 2017-05-21 14:34:45 +02:00
vpn.scm gnu: sshuttle: Update to 0.78.3. 2017-07-09 01:59:25 +02:00
w3m.scm
wdiff.scm gnu: wdiff: Remove unused screen input. 2017-06-28 23:25:23 -05:00
web-browsers.scm gnu: Move contents of zip module into compression module. 2017-06-20 18:10:35 +05:30
web.scm gnu: Add jo. 2017-06-30 20:02:13 +05:30
webkit.scm gnu: webkitgtk: Update to 2.16.5. 2017-07-07 11:54:01 -04:00
wget.scm
wicd.scm
wine.scm gnu: wine: Add stable release. 2017-07-03 18:10:11 +02:00
wm.scm gnu: xmonad: Update to 0.13. 2017-06-21 09:35:39 +02:00
wordnet.scm
wv.scm gnu: Remove libwmf. 2017-06-24 23:10:28 -04:00
wxwidgets.scm gnu: Add wxsvg. 2017-05-10 09:32:49 +02:00
xdisorg.scm gnu: xscreensaver: Update to 5.37. 2017-07-06 00:15:13 +02:00
xfce.scm gnu: xfce: Propagate search paths of 'xfce4-panel'. 2017-07-03 19:27:56 +08:00
xfig.scm
xiph.scm gnu: opus-tools: Update to 0.1.10. 2017-06-21 15:15:07 -04:00
xml.scm packages: Mark 'replacement' as an "innate" field. 2017-07-03 23:51:22 +02:00
xnee.scm
xorg.scm gnu: xorg-server: Fix CVE-2017-{10971,10972}. 2017-07-06 23:52:22 -04:00
zile.scm