2181 lines
76 KiB
Scheme
2181 lines
76 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages cran)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix utils)
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#:use-module (guix build-system r)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages machine-learning)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages statistics)
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#:use-module (gnu packages web))
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(define-public r-colorspace
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(package
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(name "r-colorspace")
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(version "1.3-2")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "colorspace" version))
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(sha256
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(base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"))))
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(build-system r-build-system)
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(home-page "https://cran.r-project.org/web/packages/colorspace")
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(synopsis "Color space manipulation")
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(description
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"This package carries out a mapping between assorted color spaces
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including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar
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CIELAB. Qualitative, sequential, and diverging color palettes based on HCL
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colors are provided.")
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(license license:bsd-3)))
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(define-public r-glue
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(package
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(name "r-glue")
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(version "1.2.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "glue" version))
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(sha256
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(base32
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"0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"))))
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(build-system r-build-system)
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(home-page "https://github.com/tidyverse/glue")
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(synopsis "Interpreted string literals")
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(description
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"This package provides an implementation of interpreted string literals,
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inspired by Python's Literal String Interpolation (PEP-0498) and
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Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.")
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(license license:expat)))
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(define-public r-plogr
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(package
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(name "r-plogr")
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(version "0.1-1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "plogr" version))
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(sha256
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(base32
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"13zliqlbkl8b04k9ga0sx5jsh7k867gracgl84l2a9kcqy9mqx92"))))
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(build-system r-build-system)
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(home-page "https://github.com/krlmlr/plogr")
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(synopsis "R bindings for the plog C++ logging library")
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(description
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"This package provides the header files for a stripped-down version of
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the plog header-only C++ logging library, and a method to log to R's standard
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error stream.")
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(license license:expat)))
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(define-public r-rcpp
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(package
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(name "r-rcpp")
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(version "0.12.15")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "Rcpp" version))
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(sha256
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(base32 "1pnv6sl4vdn69ygmgrb1b3gsigfdcfb56wnzikic93l8gkvdsvxv"))))
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(build-system r-build-system)
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(home-page "http://www.rcpp.org")
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(synopsis "Seamless R and C++ integration")
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(description
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"The Rcpp package provides R functions as well as C++ classes which offer
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a seamless integration of R and C++. Many R data types and objects can be
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mapped back and forth to C++ equivalents which facilitates both writing of new
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code as well as easier integration of third-party libraries. Documentation
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about Rcpp is provided by several vignettes included in this package, via the
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'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel
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and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
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'citation(\"Rcpp\")' for details on these last two.")
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(license license:gpl2+)))
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(define-public r-bindr
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(package
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(name "r-bindr")
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(version "0.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "bindr" version))
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(sha256
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(base32
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"0d95ifm0x4mrfzi20xf39f5pzd7rfzqsld0vjqf6xzga5rhnd8fc"))))
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(build-system r-build-system)
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(home-page "https://github.com/krlmlr/bindr")
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(synopsis "Parametrized active bindings")
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(description
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"This package provides a simple interface for creating active bindings
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where the bound function accepts additional arguments.")
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(license license:expat)))
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(define-public r-bindrcpp
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(package
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(name "r-bindrcpp")
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(version "0.2")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "bindrcpp" version))
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(sha256
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(base32
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"0l1l22zl87wiyl79m3gj2vlxmkhxvrkl4alhyy08h55q7hqs3vyh"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bindr" ,r-bindr)
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("r-plogr" ,r-plogr)
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("r-rcpp" ,r-rcpp)))
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(home-page "https://github.com/krlmlr/bindrcpp")
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(synopsis "Rcpp interface to active bindings")
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(description
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"This package provides an easy way to fill an environment with active
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bindings that call a C++ function.")
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(license license:expat)))
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(define-public r-auc
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(package
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(name "r-auc")
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(version "0.3.0")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "AUC" version))
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(sha256
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(base32
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"0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"))))
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(properties `((upstream-name . "AUC")))
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(build-system r-build-system)
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(home-page "https://cran.r-project.org/web/packages/AUC")
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(synopsis "Compute the area under the curve of selected measures")
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(description
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"This package includes functions to compute the area under the curve of
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selected measures: the area under the sensitivity curve (AUSEC), the area
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under the specificity curve (AUSPC), the area under the accuracy
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curve (AUACC), and the area under the receiver operating characteristic
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curve (AUROC). The curves can also be visualized. Support for partial areas
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is provided.")
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(license license:gpl2+)))
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(define-public r-calibrate
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(package
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(name "r-calibrate")
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(version "1.7.2")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "calibrate" version))
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(sha256
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(base32
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"010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-mass" ,r-mass)))
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(home-page "https://cran.r-project.org/web/packages/calibrate")
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(synopsis "Calibration of scatterplot and biplot axes")
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(description
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"This is a package for drawing calibrated scales with tick marks
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on (non-orthogonal) variable vectors in scatterplots and biplots.")
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(license license:gpl2)))
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(define-public r-shape
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(package
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(name "r-shape")
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(version "1.4.4")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "shape" version))
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(sha256
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(base32
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"0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"))))
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(build-system r-build-system)
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(home-page "https://cran.r-project.org/web/packages/shape")
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(synopsis "Functions for plotting graphical shapes")
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(description
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"This package provides functions for plotting graphical shapes such as
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ellipses, circles, cylinders, arrows, ...")
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(license license:gpl3+)))
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(define-public r-globaloptions
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(package
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(name "r-globaloptions")
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(version "0.0.12")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "GlobalOptions" version))
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(sha256
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|
(base32
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"1abpc03cfvazbwj2sx6qgngs5pgpzysvxkana20hyvb4n7ws77f0"))))
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(properties `((upstream-name . "GlobalOptions")))
|
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(build-system r-build-system)
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(home-page "https://github.com/jokergoo/GlobalOptions")
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(synopsis "Generate functions to get or set global options")
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(description
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"This package provides more controls on the option values such as
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validation and filtering on the values, making options invisible or private.")
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(license license:gpl2+)))
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(define-public r-circlize
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(package
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(name "r-circlize")
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(version "0.4.3")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "circlize" version))
|
|
(sha256
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|
(base32
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|
"0pg947gkryygikfbv6admx8gsg02b6g219j6a1sdnqij2908yxna"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
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|
`(("r-colorspace" ,r-colorspace)
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("r-globaloptions" ,r-globaloptions)
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("r-shape" ,r-shape)))
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|
(home-page "https://github.com/jokergoo/circlize")
|
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(synopsis "Circular visualization")
|
|
(description
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|
"Circular layout is an efficient way to visualise huge amounts of
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information. This package provides an implementation of circular layout
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generation in R as well as an enhancement of available software. Its
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flexibility is based on the usage of low-level graphics functions such that
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self-defined high-level graphics can be easily implemented by users for
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specific purposes. Together with the seamless connection between the powerful
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computational and visual environment in R, it gives users more convenience and
|
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freedom to design figures for better understanding complex patterns behind
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multi-dimensional data.")
|
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(license license:gpl2+)))
|
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|
|
(define-public r-powerlaw
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(package
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(name "r-powerlaw")
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(version "0.70.1")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "poweRlaw" version))
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|
(sha256
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|
(base32
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|
"04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"))))
|
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(properties `((upstream-name . "poweRlaw")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-vgam" ,r-vgam)))
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(home-page "https://github.com/csgillespie/poweRlaw")
|
|
(synopsis "Tools for the analysis of heavy tailed distributions")
|
|
(description
|
|
"This package provides an implementation of maximum likelihood estimators
|
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for a variety of heavy tailed distributions, including both the discrete and
|
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continuous power law distributions. Additionally, a goodness-of-fit based
|
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approach is used to estimate the lower cut-off for the scaling region.")
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;; Any of these GPL versions.
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(license (list license:gpl2 license:gpl3))))
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|
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(define-public r-compare
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(package
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(name "r-compare")
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(version "0.2-6")
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(source
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(origin
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(method url-fetch)
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(uri (cran-uri "compare" version))
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|
(sha256
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|
(base32
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|
"0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"))))
|
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(build-system r-build-system)
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(home-page "https://cran.r-project.org/web/packages/compare")
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(synopsis "Comparing objects for differences")
|
|
(description
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|
"This package provides functions to compare a model object to a
|
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comparison object. If the objects are not identical, the functions can be
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instructed to explore various modifications of the objects (e.g., sorting
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rows, dropping names) to see if the modified versions are identical.")
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(license license:gpl2+)))
|
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|
|
(define-public r-dendextend
|
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(package
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|
(name "r-dendextend")
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(version "1.6.0")
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(source
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|
(origin
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|
(method url-fetch)
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(uri (cran-uri "dendextend" version))
|
|
(sha256
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|
(base32
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|
"0pichh08zi12lpxzc061dmv4smj6lizygd1xymln8wfz18sf7923"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
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|
`(("r-fpc" ,r-fpc)
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("r-ggplot2" ,r-ggplot2)
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|
("r-magrittr" ,r-magrittr)
|
|
("r-viridis" ,r-viridis)
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("r-whisker" ,r-whisker)))
|
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(home-page "https://cran.r-project.org/web/packages/dendextend")
|
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(synopsis "Extending 'dendrogram' functionality in R")
|
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(description
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"This package offers a set of functions for extending @code{dendrogram}
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objects in R, letting you visualize and compare trees of hierarchical
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clusterings. You can adjust a tree's graphical parameters (the color, size,
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type, etc of its branches, nodes and labels) and visually and statistically
|
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compare different dendrograms to one another.")
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;; Any of these versions
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(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-getoptlong
|
|
(package
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|
(name "r-getoptlong")
|
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(version "0.1.6")
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(source
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|
(origin
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|
(method url-fetch)
|
|
(uri (cran-uri "GetoptLong" version))
|
|
(sha256
|
|
(base32
|
|
"1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"))))
|
|
(properties `((upstream-name . "GetoptLong")))
|
|
(build-system r-build-system)
|
|
(inputs
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|
`(("perl" ,perl)))
|
|
(propagated-inputs
|
|
`(("r-globaloptions" ,r-globaloptions)
|
|
("r-rjson" ,r-rjson)))
|
|
(home-page "https://github.com/jokergoo/GetoptLong")
|
|
(synopsis "Parsing command-line arguments and variable interpolation")
|
|
(description
|
|
"This is yet another command-line argument parser which wraps the
|
|
powerful Perl module @code{Getopt::Long} and with some adaptation for easier
|
|
use in R. It also provides a simple way for variable interpolation in R.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-fastmatch
|
|
(package
|
|
(name "r-fastmatch")
|
|
(version "1.1-0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "fastmatch" version))
|
|
(sha256
|
|
(base32
|
|
"0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"))))
|
|
(build-system r-build-system)
|
|
(home-page "http://www.rforge.net/fastmatch")
|
|
(synopsis "Fast match function")
|
|
(description
|
|
"This package provides a fast @code{match} replacement for cases that
|
|
require repeated look-ups. It is slightly faster that R's built-in
|
|
@code{match} function on first match against a table, but extremely fast on
|
|
any subsequent lookup as it keeps the hash table in memory.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-ff
|
|
(package
|
|
(name "r-ff")
|
|
(version "2.2-13")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ff" version))
|
|
(sha256
|
|
(base32
|
|
"1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-bit" ,r-bit)))
|
|
(home-page "http://ff.r-forge.r-project.org/")
|
|
(synopsis "Memory-efficient storage of large data on disk and access functions")
|
|
(description
|
|
"This package provides data structures that are stored on disk but
|
|
behave (almost) as if they were in RAM by transparently mapping only a section
|
|
in main memory.")
|
|
;; error Architecture not supported.
|
|
(supported-systems (delete "aarch64-linux" %supported-systems))
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-ffbase
|
|
(package
|
|
(name "r-ffbase")
|
|
(version "0.12.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ffbase" version))
|
|
(sha256
|
|
(base32
|
|
"1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-bit" ,r-bit)
|
|
("r-fastmatch" ,r-fastmatch)
|
|
("r-ff" ,r-ff)))
|
|
(home-page "http://github.com/edwindj/ffbase")
|
|
(synopsis "Basic statistical functions for package 'ff'")
|
|
(description
|
|
"This package extends the out of memory vectors of @code{ff} with
|
|
statistical functions and other utilities to ease their usage.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-prettyunits
|
|
(package
|
|
(name "r-prettyunits")
|
|
(version "1.0.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "prettyunits" version))
|
|
(sha256
|
|
(base32
|
|
"0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-assertthat" ,r-assertthat)
|
|
("r-magrittr" ,r-magrittr)))
|
|
(home-page "https://github.com/gaborcsardi/prettyunits")
|
|
(synopsis "Pretty, human readable formatting of quantities")
|
|
(description
|
|
"This package provides tools for pretty, human readable formatting of
|
|
quantities.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-reshape
|
|
(package
|
|
(name "r-reshape")
|
|
(version "0.8.7")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "reshape" version))
|
|
(sha256
|
|
(base32
|
|
"14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-plyr" ,r-plyr)
|
|
("r-rcpp" ,r-rcpp)))
|
|
(home-page "http://had.co.nz/reshape")
|
|
(synopsis "Flexibly reshape data")
|
|
(description
|
|
"Flexibly restructure and aggregate data using just two functions:
|
|
@code{melt} and @code{cast}. This package provides them.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-progress
|
|
(package
|
|
(name "r-progress")
|
|
(version "1.1.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "progress" version))
|
|
(sha256
|
|
(base32
|
|
"1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-prettyunits" ,r-prettyunits)
|
|
("r-r6" ,r-r6)))
|
|
(home-page "https://github.com/gaborcsardi/progress")
|
|
(synopsis "Terminal progress bars")
|
|
(description
|
|
"This package provides configurable progress bars. They may include
|
|
percentage, elapsed time, and/or the estimated completion time. They work in
|
|
terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app. The
|
|
package also provides a C++ API, that works with or without Rcpp.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-ggally
|
|
(package
|
|
(name "r-ggally")
|
|
(version "1.3.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "GGally" version))
|
|
(sha256
|
|
(base32
|
|
"02px7j28wzbhcgcwm2m0pxb6g7s5zvphl64ix55pkvag4m2ky57l"))))
|
|
(properties `((upstream-name . "GGally")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-ggplot2" ,r-ggplot2)
|
|
("r-gtable" ,r-gtable)
|
|
("r-plyr" ,r-plyr)
|
|
("r-progress" ,r-progress)
|
|
("r-rcolorbrewer" ,r-rcolorbrewer)
|
|
("r-reshape" ,r-reshape)))
|
|
(home-page "https://ggobi.github.io/ggally")
|
|
(synopsis "Extension to ggplot2")
|
|
(description
|
|
"The R package ggplot2 is a plotting system based on the grammar of
|
|
graphics. GGally extends ggplot2 by adding several functions to reduce the
|
|
complexity of combining geometric objects with transformed data. Some of
|
|
these functions include a pairwise plot matrix, a two group pairwise plot
|
|
matrix, a parallel coordinates plot, a survival plot, and several functions to
|
|
plot networks.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-proxy
|
|
(package
|
|
(name "r-proxy")
|
|
(version "0.4-20")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "proxy" version))
|
|
(sha256
|
|
(base32
|
|
"15g6dacdmlbkcnimblscghl23aj732cn6qwbs583r4im9v5nvbla"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/proxy")
|
|
(synopsis "Distance and similarity measures")
|
|
(description
|
|
"This package provides an extensible framework for the efficient
|
|
calculation of auto- and cross-proximities, along with implementations of the
|
|
most popular ones.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-sp
|
|
(package
|
|
(name "r-sp")
|
|
(version "1.2-5")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "sp" version))
|
|
(sha256
|
|
(base32
|
|
"09yydnacp33yx0kn537k96fjlbf75fjafqfknpa5gvci4l888bqd"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-lattice" ,r-lattice)))
|
|
(home-page "https://cran.r-project.org/web/packages/sp")
|
|
(synopsis "Classes and methods for spatial data")
|
|
(description
|
|
"This package provides classes and methods for spatial data; the classes
|
|
document where the spatial location information resides, for 2D or 3D data.
|
|
Utility functions are provided, e.g. for plotting data as maps, spatial
|
|
selection, as well as methods for retrieving coordinates, for subsetting,
|
|
print, summary, etc.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-rmtstat
|
|
(package
|
|
(name "r-rmtstat")
|
|
(version "0.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "RMTstat" version))
|
|
(sha256
|
|
(base32
|
|
"1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"))))
|
|
(properties `((upstream-name . "RMTstat")))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/RMTstat")
|
|
(synopsis "Distributions, statistics and tests derived from random matrix theory")
|
|
(description
|
|
"This package provides functions for working with the Tracy-Widom laws
|
|
and other distributions related to the eigenvalues of large Wishart
|
|
matrices.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public r-rmpi
|
|
(package
|
|
(name "r-rmpi")
|
|
(version "0.6-6")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "Rmpi" version))
|
|
(sha256
|
|
(base32
|
|
"0fm6z049aaq2c9xagm8n64d9560hg9d8hyb0m359fii672nhkz6q"))))
|
|
(properties `((upstream-name . "Rmpi")))
|
|
(build-system r-build-system)
|
|
(arguments
|
|
`(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\"")))
|
|
(inputs
|
|
`(("openmpi" ,openmpi)))
|
|
(home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi")
|
|
(synopsis "R interface to message-passing interface (MPI)")
|
|
(description
|
|
"This package provides an interface (wrapper) to MPI APIs. It also
|
|
provides an interactive R manager and worker environment.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-lmoments
|
|
(package
|
|
(name "r-lmoments")
|
|
(version "1.2-3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "Lmoments" version))
|
|
(sha256
|
|
(base32
|
|
"13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"))))
|
|
(properties `((upstream-name . "Lmoments")))
|
|
(build-system r-build-system)
|
|
(home-page "http://www.tilastotiede.fi/juha_karvanen.html")
|
|
(synopsis "L-moments and quantile mixtures")
|
|
(description
|
|
"This package contains functions to estimate L-moments and trimmed
|
|
L-moments from the data. It also contains functions to estimate the
|
|
parameters of the normal polynomial quantile mixture and the Cauchy polynomial
|
|
quantile mixture from L-moments and trimmed L-moments.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-distillery
|
|
(package
|
|
(name "r-distillery")
|
|
(version "1.0-4")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "distillery" version))
|
|
(sha256
|
|
(base32
|
|
"1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"))))
|
|
(build-system r-build-system)
|
|
(home-page "http://www.ral.ucar.edu/staff/ericg")
|
|
(synopsis "Functions for confidence intervals and object information")
|
|
(description
|
|
"This package provides some very simple method functions for confidence
|
|
interval calculation and to distill pertinent information from a potentially
|
|
complex object; primarily used in common with the packages extRemes and
|
|
SpatialVx.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-extremes
|
|
(package
|
|
(name "r-extremes")
|
|
(version "2.0-8")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "extRemes" version))
|
|
(sha256
|
|
(base32
|
|
"0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"))))
|
|
(properties `((upstream-name . "extRemes")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-car" ,r-car)
|
|
("r-distillery" ,r-distillery)
|
|
("r-lmoments" ,r-lmoments)))
|
|
(home-page "http://www.assessment.ucar.edu/toolkit/")
|
|
(synopsis "Extreme value analysis")
|
|
(description
|
|
"ExtRemes is a suite of functions for carrying out analyses on the
|
|
extreme values of a process of interest; be they block maxima over long blocks
|
|
or excesses over a high threshold.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-lmtest
|
|
(package
|
|
(name "r-lmtest")
|
|
(version "0.9-35")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "lmtest" version))
|
|
(sha256
|
|
(base32
|
|
"107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-zoo" ,r-zoo)))
|
|
(native-inputs
|
|
`(("gfortran" ,gfortran)))
|
|
(home-page "https://cran.r-project.org/web/packages/lmtest")
|
|
(synopsis "Testing linear regression models")
|
|
(description
|
|
"This package provides a collection of tests, data sets, and examples for
|
|
diagnostic checking in linear regression models. Furthermore, some generic
|
|
tools for inference in parametric models are provided.")
|
|
;; Either version is okay
|
|
(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-inline
|
|
(package
|
|
(name "r-inline")
|
|
(version "0.3.14")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "inline" version))
|
|
(sha256
|
|
(base32
|
|
"0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/inline")
|
|
(synopsis "Functions to inline C, C++, Fortran function calls from R")
|
|
(description
|
|
"This package provides functionality to dynamically define R functions
|
|
and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and
|
|
@code{.Call} calling conventions.")
|
|
;; Any version of the LGPL.
|
|
(license license:lgpl3+)))
|
|
|
|
(define-public r-bbmle
|
|
(package
|
|
(name "r-bbmle")
|
|
(version "1.0.20")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "bbmle" version))
|
|
(sha256
|
|
(base32
|
|
"1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-lattice" ,r-lattice)
|
|
("r-mass" ,r-mass)
|
|
("r-numderiv" ,r-numderiv)))
|
|
(home-page "https://cran.r-project.org/web/packages/bbmle")
|
|
(synopsis "Tools for General Maximum Likelihood Estimation")
|
|
(description
|
|
"This package provides methods and functions for fitting maximum
|
|
likelihood models in R. This package modifies and extends the @code{mle}
|
|
classes in the @code{stats4} package.")
|
|
;; Any version of the GPL
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-emdbook
|
|
(package
|
|
(name "r-emdbook")
|
|
(version "1.3.9")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "emdbook" version))
|
|
(sha256
|
|
(base32
|
|
"09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-bbmle" ,r-bbmle)
|
|
("r-coda" ,r-coda)
|
|
("r-lattice" ,r-lattice)
|
|
("r-mass" ,r-mass)
|
|
("r-plyr" ,r-plyr)
|
|
("r-rcpp" ,r-rcpp)))
|
|
(home-page "http://www.math.mcmaster.ca/bolker/emdbook")
|
|
(synopsis "Support functions and data for \"Ecological Models and Data\"")
|
|
(description
|
|
"This package provides auxiliary functions and data sets for \"Ecological
|
|
Models and Data\", a book presenting maximum likelihood estimation and related
|
|
topics for ecologists (ISBN 978-0-691-12522-0).")
|
|
;; Any GPL version
|
|
(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-lpsolve
|
|
(package
|
|
(name "r-lpsolve")
|
|
(version "5.6.13")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "lpSolve" version))
|
|
(sha256
|
|
(base32
|
|
"13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"))))
|
|
(properties `((upstream-name . "lpSolve")))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/lpSolve")
|
|
(synopsis "R interface to Lp_solve to solve linear/integer programs")
|
|
(description
|
|
"Lp_solve is software for solving linear, integer and mixed integer
|
|
programs. This implementation supplies a \"wrapper\" function in C and some R
|
|
functions that solve general linear/integer problems, assignment problems, and
|
|
transportation problems.")
|
|
(license license:lgpl2.0)))
|
|
|
|
(define-public r-limsolve
|
|
(package
|
|
(name "r-limsolve")
|
|
(version "1.5.5.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "limSolve" version))
|
|
(sha256
|
|
(base32
|
|
"1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"))))
|
|
(properties `((upstream-name . "limSolve")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-lpsolve" ,r-lpsolve)
|
|
("r-mass" ,r-mass)
|
|
("r-quadprog" ,r-quadprog)))
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "https://cran.r-project.org/web/packages/limSolve")
|
|
(synopsis "Solving linear inverse models")
|
|
(description
|
|
"This package provides functions that:
|
|
|
|
@enumerate
|
|
@item find the minimum/maximum of a linear or quadratic function,
|
|
@item sample an underdetermined or overdetermined system,
|
|
@item solve a linear system Ax=B for the unknown x.
|
|
@end enumerate
|
|
|
|
It includes banded and tridiagonal linear systems. The package calls Fortran
|
|
functions from LINPACK.")
|
|
;; Any GPL version.
|
|
(license (list license:gpl2+ license:gpl3+))))
|
|
|
|
(define-public r-fitdistrplus
|
|
(package
|
|
(name "r-fitdistrplus")
|
|
(version "1.0-9")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "fitdistrplus" version))
|
|
(sha256
|
|
(base32
|
|
"18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-mass" ,r-mass)
|
|
("r-survival" ,r-survival)))
|
|
(home-page "http://riskassessment.r-forge.r-project.org")
|
|
(synopsis "Fitting a parametric distribution from data")
|
|
(description
|
|
"This package extends the @code{fitdistr} function of the MASS package
|
|
with several functions to help the fit of a parametric distribution to
|
|
non-censored or censored data. Censored data may contain left-censored,
|
|
right-censored and interval-censored values, with several lower and upper
|
|
bounds. In addition to @dfn{maximum likelihood estimation} (MLE), the package
|
|
provides moment matching (MME), quantile matching (QME) and maximum
|
|
goodness-of-fit estimation (MGE) methods (available only for non-censored
|
|
data). Weighted versions of MLE, MME and QME are available.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-energy
|
|
(package
|
|
(name "r-energy")
|
|
(version "1.7-2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "energy" version))
|
|
(sha256
|
|
(base32
|
|
"19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-boot" ,r-boot)
|
|
("r-rcpp" ,r-rcpp)))
|
|
(home-page "https://cran.r-project.org/web/packages/energy")
|
|
(synopsis "Multivariate inference via the energy of data")
|
|
(description
|
|
"This package provides e-statistics (energy) tests and statistics for
|
|
multivariate and univariate inference, including distance correlation,
|
|
one-sample, two-sample, and multi-sample tests for comparing multivariate
|
|
distributions, are implemented. Measuring and testing multivariate
|
|
independence based on distance correlation, partial distance correlation,
|
|
multivariate goodness-of-fit tests, clustering based on energy distance,
|
|
testing for multivariate normality, distance components (disco) for
|
|
non-parametric analysis of structured data, and other energy
|
|
statistics/methods are implemented.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-suppdists
|
|
(package
|
|
(name "r-suppdists")
|
|
(version "1.1-9.4")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "SuppDists" version))
|
|
(sha256
|
|
(base32
|
|
"1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"))))
|
|
(properties `((upstream-name . "SuppDists")))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/SuppDists")
|
|
(synopsis "Supplementary distributions")
|
|
(description
|
|
"This package provides ten distributions supplementing those built into
|
|
R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared,
|
|
Spearman's rho, maximum F ratio, the Pearson product moment correlation
|
|
coefficient, Johnson distributions, normal scores and generalized
|
|
hypergeometric distributions. In addition two random number generators of
|
|
George Marsaglia are included.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-ksamples
|
|
(package
|
|
(name "r-ksamples")
|
|
(version "1.2-7")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "kSamples" version))
|
|
(sha256
|
|
(base32
|
|
"0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"))))
|
|
(properties `((upstream-name . "kSamples")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-suppdists" ,r-suppdists)))
|
|
(home-page "https://cran.r-project.org/web/packages/kSamples")
|
|
(synopsis "K-Sample rank tests and their combinations")
|
|
(description
|
|
"This package provides tools to compares k samples using the
|
|
Anderson-Darling test, Kruskal-Wallis type tests with different rank score
|
|
criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT)
|
|
test. It computes asymptotic, simulated or (limited) exact P-values, all
|
|
valid under randomization, with or without ties, or conditionally under random
|
|
sampling from populations, given the observed tie pattern. Except for Steel's
|
|
test and the JT test it also combines these tests across several blocks of
|
|
samples.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-cvst
|
|
(package
|
|
(name "r-cvst")
|
|
(version "0.2-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "CVST" version))
|
|
(sha256
|
|
(base32
|
|
"17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"))))
|
|
(properties `((upstream-name . "CVST")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-kernlab" ,r-kernlab)
|
|
("r-matrix" ,r-matrix)))
|
|
(home-page "https://cran.r-project.org/web/packages/CVST")
|
|
(synopsis "Fast cross-validation via sequential testing")
|
|
(description
|
|
"This package implements the fast cross-validation via sequential
|
|
testing (CVST) procedure. CVST is an improved cross-validation procedure
|
|
which uses non-parametric testing coupled with sequential analysis to
|
|
determine the best parameter set on linearly increasing subsets of the data.
|
|
Additionally to the CVST the package contains an implementation of the
|
|
ordinary k-fold cross-validation with a flexible and powerful set of helper
|
|
objects and methods to handle the overall model selection process. The
|
|
implementations of the Cochran's Q test with permutations and the sequential
|
|
testing framework of Wald are generic and can therefore also be used in other
|
|
contexts.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-squarem
|
|
(package
|
|
(name "r-squarem")
|
|
(version "2017.10-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "SQUAREM" version))
|
|
(sha256
|
|
(base32
|
|
"10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"))))
|
|
(properties `((upstream-name . "SQUAREM")))
|
|
(build-system r-build-system)
|
|
(home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html")
|
|
(synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms")
|
|
(description
|
|
"This package provides algorithms for accelerating the convergence of
|
|
slow, monotone sequences from smooth, contraction mapping such as the EM
|
|
algorithm. It can be used to accelerate any smooth, linearly convergent
|
|
acceleration scheme. A tutorial style introduction to this package is
|
|
available in a vignette.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-lava
|
|
(package
|
|
(name "r-lava")
|
|
(version "1.5.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "lava" version))
|
|
(sha256
|
|
(base32
|
|
"1vcm04h9i39gmf2prl5d4j4il4gs6skzr6y2fvl1vn4hklna87f4"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-numderiv" ,r-numderiv)
|
|
("r-survival" ,r-survival)))
|
|
(home-page "https://github.com/kkholst/lava")
|
|
(synopsis "Latent variable models")
|
|
(description
|
|
"This package provides tools for the estimation and simulation of latent
|
|
variable models.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-drr
|
|
(package
|
|
(name "r-drr")
|
|
(version "0.0.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "DRR" version))
|
|
(sha256
|
|
(base32
|
|
"1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"))))
|
|
(properties `((upstream-name . "DRR")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-cvst" ,r-cvst)
|
|
("r-kernlab" ,r-kernlab)
|
|
("r-matrix" ,r-matrix)))
|
|
(home-page "https://cran.r-project.org/web/packages/DRR")
|
|
(synopsis "Dimensionality reduction via regression")
|
|
(description
|
|
"This package provides an implementation of dimensionality reduction via
|
|
regression using Kernel Ridge Regression.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-prodlim
|
|
(package
|
|
(name "r-prodlim")
|
|
(version "1.6.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "prodlim" version))
|
|
(sha256
|
|
(base32
|
|
"0m51rkivx1zr6whdqwj66jpnkmp4385m06kkha3dp8qqf4jna9iz"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-kernsmooth" ,r-kernsmooth)
|
|
("r-lava" ,r-lava)
|
|
("r-rcpp" ,r-rcpp)
|
|
("r-survival" ,r-survival)))
|
|
(home-page "https://cran.r-project.org/web/packages/prodlim")
|
|
(synopsis "Product-limit estimation for censored event history analysis")
|
|
(description
|
|
"This package provides a fast and user-friendly implementation of
|
|
nonparametric estimators for censored event history (survival) analysis with
|
|
the Kaplan-Meier and Aalen-Johansen methods.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-dimred
|
|
(package
|
|
(name "r-dimred")
|
|
(version "0.1.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "dimRed" version))
|
|
(sha256
|
|
(base32
|
|
"0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v"))))
|
|
(properties `((upstream-name . "dimRed")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-drr" ,r-drr)))
|
|
(home-page "https://github.com/gdkrmr/dimRed")
|
|
(synopsis "Framework for dimensionality reduction")
|
|
(description
|
|
"This package provides a collection of dimensionality reduction
|
|
techniques from R packages and provides a common interface for calling the
|
|
methods.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-timedate
|
|
(package
|
|
(name "r-timedate")
|
|
(version "3042.101")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "timeDate" version))
|
|
(sha256
|
|
(base32
|
|
"0vcckaw1gqz3j4v69r9jn41vlmk5a5c7572xam1nl75ki5v4r3bc"))))
|
|
(properties `((upstream-name . "timeDate")))
|
|
(build-system r-build-system)
|
|
(home-page "https://www.rmetrics.org")
|
|
(synopsis "Chronological and calendar objects")
|
|
(description
|
|
"This package provides an environment for teaching \"Financial
|
|
Engineering and Computational Finance\" and for managing chronological and
|
|
calendar objects.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-ddalpha
|
|
(package
|
|
(name "r-ddalpha")
|
|
(version "1.3.1.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ddalpha" version))
|
|
(sha256
|
|
(base32
|
|
"13w8ir5rd80rka4mq343zd4wn93vfw870lzfqrd3cxgwb1bwcw7y"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-bh" ,r-bh)
|
|
("r-class" ,r-class)
|
|
("r-mass" ,r-mass)
|
|
("r-rcpp" ,r-rcpp)
|
|
("r-robustbase" ,r-robustbase)
|
|
("r-sfsmisc" ,r-sfsmisc)))
|
|
(native-inputs
|
|
`(("gfortran" ,gfortran)))
|
|
(home-page "https://cran.r-project.org/web/packages/ddalpha")
|
|
(synopsis "Depth-Based classification and calculation of data depth")
|
|
(description
|
|
"This package contains procedures for depth-based supervised learning,
|
|
which are entirely non-parametric, in particular the DDalpha-procedure (Lange,
|
|
Mosler and Mozharovskyi, 2014). The training data sample is transformed by a
|
|
statistical depth function to a compact low-dimensional space, where the final
|
|
classification is done. It also offers an extension to functional data and
|
|
routines for calculating certain notions of statistical depth functions. 50
|
|
multivariate and 5 functional classification problems are included.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-gower
|
|
(package
|
|
(name "r-gower")
|
|
(version "0.1.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "gower" version))
|
|
(sha256
|
|
(base32
|
|
"1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
|
|
(build-system r-build-system)
|
|
(native-inputs
|
|
`(("r-knitr" ,r-knitr)))
|
|
(home-page "https://github.com/markvanderloo/gower")
|
|
(synopsis "Gower's distance")
|
|
(description
|
|
"This package provides tools to compute Gower's distance (or similarity)
|
|
coefficient between records, and to compute the top-n matches between records.
|
|
Core algorithms are executed in parallel on systems supporting OpenMP.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-rcpproll
|
|
(package
|
|
(name "r-rcpproll")
|
|
(version "0.2.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "RcppRoll" version))
|
|
(sha256
|
|
(base32
|
|
"19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"))))
|
|
(properties `((upstream-name . "RcppRoll")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-rcpp" ,r-rcpp)))
|
|
(home-page "https://cran.r-project.org/web/packages/RcppRoll")
|
|
(synopsis "Efficient rolling and windowed operations")
|
|
(description
|
|
"This package provides fast and efficient routines for common rolling /
|
|
windowed operations. Routines for the efficient computation of windowed mean,
|
|
median, sum, product, minimum, maximum, standard deviation and variance are
|
|
provided.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-ipred
|
|
(package
|
|
(name "r-ipred")
|
|
(version "0.9-6")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ipred" version))
|
|
(sha256
|
|
(base32
|
|
"1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-class" ,r-class)
|
|
("r-mass" ,r-mass)
|
|
("r-nnet" ,r-nnet)
|
|
("r-prodlim" ,r-prodlim)
|
|
("r-rpart" ,r-rpart)
|
|
("r-survival" ,r-survival)))
|
|
(home-page "https://cran.r-project.org/web/packages/ipred")
|
|
(synopsis "Improved predictors")
|
|
(description
|
|
"This package provides improved predictive models by indirect
|
|
classification and bagging for classification, regression and survival
|
|
problems as well as resampling based estimators of prediction error.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-psych
|
|
(package
|
|
(name "r-psych")
|
|
(version "1.7.8")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "psych" version))
|
|
(sha256
|
|
(base32
|
|
"0daismb8pdk392vdy304hqx0m3jx62gx3a0hygjygc125rhfla7k"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-foreign" ,r-foreign)
|
|
("r-lattice" ,r-lattice)
|
|
("r-mnormt" ,r-mnormt)
|
|
("r-nlme" ,r-nlme)))
|
|
(home-page "https://cran.r-project.org/web/packages/psych/")
|
|
(synopsis "Procedures for psychological, psychometric, and personality research")
|
|
(description
|
|
"This package provides a general purpose toolbox for personality,
|
|
psychometric theory and experimental psychology. Functions are primarily for
|
|
multivariate analysis and scale construction using factor analysis, principal
|
|
component analysis, cluster analysis and reliability analysis, although others
|
|
provide basic descriptive statistics. Item Response Theory is done using
|
|
factor analysis of tetrachoric and polychoric correlations. Functions for
|
|
analyzing data at multiple levels include within and between group statistics,
|
|
including correlations and factor analysis. Functions for simulating and
|
|
testing particular item and test structures are included. Several functions
|
|
serve as a useful front end for structural equation modeling. Graphical
|
|
displays of path diagrams, factor analysis and structural equation models are
|
|
created using basic graphics.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-broom
|
|
(package
|
|
(name "r-broom")
|
|
(version "0.4.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "broom" version))
|
|
(sha256
|
|
(base32
|
|
"119pc2jnxvm13cvd77c7d14p3bn68f4jm310vj3yfck40101n9if"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-dplyr" ,r-dplyr)
|
|
("r-nlme" ,r-nlme)
|
|
("r-plyr" ,r-plyr)
|
|
("r-psych" ,r-psych)
|
|
("r-reshape2" ,r-reshape2)
|
|
("r-stringr" ,r-stringr)
|
|
("r-tidyr" ,r-tidyr)))
|
|
(home-page "http://github.com/tidyverse/broom")
|
|
(synopsis "Convert statistical analysis objects into tidy data frames")
|
|
(description
|
|
"This package provides tools to convert statistical analysis objects from
|
|
R into tidy data frames, so that they can more easily be combined, reshaped
|
|
and otherwise processed with tools like @code{dplyr}, @code{tidyr} and
|
|
@code{ggplot2}. The package provides three S3 generics: @code{tidy}, which
|
|
summarizes a model's statistical findings such as coefficients of a
|
|
regression; @code{augment}, which adds columns to the original data such as
|
|
predictions, residuals and cluster assignments; and @code{glance}, which
|
|
provides a one-row summary of model-level statistics.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-recipes
|
|
(package
|
|
(name "r-recipes")
|
|
(version "0.1.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "recipes" version))
|
|
(sha256
|
|
(base32
|
|
"1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-broom" ,r-broom)
|
|
("r-ddalpha" ,r-ddalpha)
|
|
("r-dimred" ,r-dimred)
|
|
("r-dplyr" ,r-dplyr)
|
|
("r-gower" ,r-gower)
|
|
("r-ipred" ,r-ipred)
|
|
("r-lubridate" ,r-lubridate)
|
|
("r-magrittr" ,r-magrittr)
|
|
("r-matrix" ,r-matrix)
|
|
("r-purrr" ,r-purrr)
|
|
("r-rcpproll" ,r-rcpproll)
|
|
("r-rlang" ,r-rlang)
|
|
("r-tibble" ,r-tibble)
|
|
("r-tidyselect" ,r-tidyselect)
|
|
("r-timedate" ,r-timedate)))
|
|
(home-page "https://github.com/topepo/recipes")
|
|
(synopsis "Preprocessing tools to create design matrices")
|
|
(description
|
|
"Recipes is an extensible framework to create and preprocess design
|
|
matrices. Recipes consist of one or more data manipulation and analysis
|
|
\"steps\". Statistical parameters for the steps can be estimated from an
|
|
initial data set and then applied to other data sets. The resulting design
|
|
matrices can then be used as inputs into statistical or machine learning
|
|
models.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-pdist
|
|
(package
|
|
(name "r-pdist")
|
|
(version "1.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "pdist" version))
|
|
(sha256
|
|
(base32
|
|
"18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://github.com/jeffwong/pdist")
|
|
(synopsis "Partitioned distance function")
|
|
(description
|
|
"Pdist computes the euclidean distance between rows of a matrix X and
|
|
rows of another matrix Y. Previously, this could be done by binding the two
|
|
matrices together and calling @code{dist}, but this creates unnecessary
|
|
computation by computing the distances between a row of X and another row of
|
|
X, and likewise for Y. Pdist strictly computes distances across the two
|
|
matrices, not within the same matrix, making computations significantly faster
|
|
for certain use cases.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public r-ggrepel
|
|
(package
|
|
(name "r-ggrepel")
|
|
(version "0.7.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ggrepel" version))
|
|
(sha256
|
|
(base32
|
|
"0g0qfm6g71rv27423c1x846ipilnj213knyzrcr09vrpxc87l618"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-ggplot2" ,r-ggplot2)
|
|
("r-rcpp" ,r-rcpp)
|
|
("r-scales" ,r-scales)))
|
|
(home-page "http://github.com/slowkow/ggrepel")
|
|
(synopsis "Repulsive text and label geometries for ggplot2")
|
|
(description
|
|
"This package provides text and label geometries for ggplot2 that help to
|
|
avoid overlapping text labels. Labels repel away from each other and away
|
|
from the data points.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-corrplot
|
|
(package
|
|
(name "r-corrplot")
|
|
(version "0.84")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "corrplot" version))
|
|
(sha256
|
|
(base32
|
|
"1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://github.com/taiyun/corrplot")
|
|
(synopsis "Visualization of a correlation matrix")
|
|
(description
|
|
"This package provides a graphical display of a correlation matrix or
|
|
general matrix. It also contains some algorithms to do matrix reordering. In
|
|
addition, corrplot is good at details, including choosing color, text labels,
|
|
color labels, layout, etc.")
|
|
;; Any version of the GPL
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-stringdist
|
|
(package
|
|
(name "r-stringdist")
|
|
(version "0.9.4.6")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "stringdist" version))
|
|
(sha256
|
|
(base32
|
|
"0j5b7hr53nr9xq44famkpwzi4khix93ffani5pwldqkf8bpdvhci"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://github.com/markvanderloo/stringdist")
|
|
(synopsis "Approximate string matching and string distance functions")
|
|
(description
|
|
"This package implements an approximate string matching version of R's
|
|
native @code{match} function. It can calculate various string distances based
|
|
on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment),
|
|
qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro,
|
|
Jaro-Winkler). An implementation of soundex is provided as well. Distances
|
|
can be computed between character vectors while taking proper care of encoding
|
|
or between integer vectors representing generic sequences.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public r-mice
|
|
(package
|
|
(name "r-mice")
|
|
(version "2.46.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "mice" version))
|
|
(sha256
|
|
(base32
|
|
"1gjvlk67zvgipfczsca8zqk97vg3sivv82hblsdwp14s7smhjcax"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-lattice" ,r-lattice)
|
|
("r-mass" ,r-mass)
|
|
("r-nnet" ,r-nnet)
|
|
("r-rcpp" ,r-rcpp)
|
|
("r-rpart" ,r-rpart)
|
|
("r-survival" ,r-survival)))
|
|
(home-page "https://cran.r-project.org/web/packages/mice/")
|
|
(synopsis "Multivariate imputation by chained equations")
|
|
(description
|
|
"Multiple imputation using @dfn{Fully Conditional Specification} (FCS)
|
|
implemented by the MICE algorithm as described in @url{Van Buuren and
|
|
Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}. Each
|
|
variable has its own imputation model. Built-in imputation models are
|
|
provided for continuous data (predictive mean matching, normal), binary
|
|
data (logistic regression), unordered categorical data (polytomous logistic
|
|
regression) and ordered categorical data (proportional odds). MICE can also
|
|
impute continuous two-level data (normal model, pan, second-level variables).
|
|
Passive imputation can be used to maintain consistency between variables.
|
|
Various diagnostic plots are available to inspect the quality of the
|
|
imputations.")
|
|
;; Any of these two versions.
|
|
(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-truncnorm
|
|
(package
|
|
(name "r-truncnorm")
|
|
(version "1.0-7")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "truncnorm" version))
|
|
(sha256
|
|
(base32
|
|
"1qac05z50618y4bw1d7yznsli1bv82s0g8h37iacrjrdkv87bmy7"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/truncnorm/")
|
|
(synopsis "Truncated normal distribution")
|
|
(description "This package provides functions for the truncated normal
|
|
distribution with mean equal to @code{mean} and standard deviation equal to
|
|
@code{sd}. It includes density, distribution, quantile, and expected value
|
|
functions, as well as a random generation function.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-rsolnp
|
|
(package
|
|
(name "r-rsolnp")
|
|
(version "1.16")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "Rsolnp" version))
|
|
(sha256
|
|
(base32
|
|
"0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"))))
|
|
(properties `((upstream-name . "Rsolnp")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-truncnorm" ,r-truncnorm)))
|
|
(home-page "https://cran.r-project.org/web/packages/Rsolnp/")
|
|
(synopsis "General non-linear optimization")
|
|
(description "The Rsolnp package implements a general non-linear augmented
|
|
Lagrange multiplier method solver, a @dfn{sequential quadratic
|
|
programming} (SQP) based solver).")
|
|
;; Any version of the GPL.
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-hardyweinberg
|
|
(package
|
|
(name "r-hardyweinberg")
|
|
(version "1.5.9")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "HardyWeinberg" version))
|
|
(sha256
|
|
(base32
|
|
"0qk3lly5qczn61rj0q9xzscppspvk238yjgr4p71pkzkjhiv40jz"))))
|
|
(properties `((upstream-name . "HardyWeinberg")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-mice" ,r-mice)
|
|
("r-rcpp" ,r-rcpp)
|
|
("r-rsolnp" ,r-rsolnp)))
|
|
(home-page "https://cran.r-project.org/package=HardyWeinberg")
|
|
(synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium")
|
|
(description
|
|
"This package contains tools for exploring Hardy-Weinberg equilibrium for
|
|
diallelic genetic marker data. All classical tests (chi-square, exact,
|
|
likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are
|
|
included in the package, as well as functions for power computation and for
|
|
the simulation of marker data under equilibrium and disequilibrium. Routines
|
|
for dealing with markers on the X-chromosome are included. Functions for
|
|
testing equilibrium in the presence of missing data by using multiple
|
|
imputation are also provided. Implements several graphics for exploring the
|
|
equilibrium status of a large set of diallelic markers: ternary plots with
|
|
acceptance regions, log-ratio plots and Q-Q plots.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-sm
|
|
(package
|
|
(name "r-sm")
|
|
(version "2.2-5.4")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "sm" version))
|
|
(sha256
|
|
(base32
|
|
"0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"))))
|
|
(build-system r-build-system)
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
|
|
(synopsis "Smoothing methods for nonparametric regression and density estimation")
|
|
(description
|
|
"This is software accompanying the book 'Applied Smoothing Techniques for
|
|
Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford
|
|
University Press. It provides smoothing methods for nonparametric regression
|
|
and density estimation")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-vioplot
|
|
(package
|
|
(name "r-vioplot")
|
|
(version "0.2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "vioplot" version))
|
|
(sha256
|
|
(base32
|
|
"16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-sm" ,r-sm)))
|
|
(home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler")
|
|
(synopsis "Violin plot")
|
|
(description
|
|
"This package provides a violin plot, which is a combination of a box
|
|
plot and a kernel density plot.")
|
|
(license license:bsd-3)))
|
|
|
|
(define-public r-rsofia
|
|
(package
|
|
(name "r-rsofia")
|
|
(version "1.1")
|
|
(source (origin
|
|
(method url-fetch)
|
|
;; This package has been removed from CRAN, so we can
|
|
;; only fetch it from the archives.
|
|
(uri (string-append "https://cran.r-project.org/src/"
|
|
"contrib/Archive/RSofia/RSofia_"
|
|
version ".tar.gz"))
|
|
(sha256
|
|
(base32
|
|
"0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn"))))
|
|
(properties `((upstream-name . "RSofia")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-rcpp" ,r-rcpp)))
|
|
(home-page "https://cran.r-project.org/src/contrib/Archive/RSofia")
|
|
(synopsis "Port of sofia-ml to R")
|
|
(description "This package is a port of sofia-ml to R. Sofia-ml is a
|
|
suite of fast incremental algorithms for machine learning that can be used for
|
|
training models for classification or ranking.")
|
|
(license license:asl2.0)))
|
|
|
|
(define-public r-xts
|
|
(package
|
|
(name "r-xts")
|
|
(version "0.10-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "xts" version))
|
|
(sha256
|
|
(base32
|
|
"1j9ddh9v9081zrqlpylsk13fldilhjdyaw6r6pa726fhgnrsf8a2"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-zoo" ,r-zoo)))
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "https://github.com/joshuaulrich/xts")
|
|
(synopsis "Extensible time series")
|
|
(description
|
|
"This package provides for uniform handling of R's different time-based
|
|
data classes by extending @code{zoo}, maximizing native format information
|
|
preservation and allowing for user-level customization and extension, while
|
|
simplifying cross-class interoperability.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-performanceanalytics
|
|
(package
|
|
(name "r-performanceanalytics")
|
|
(version "1.4.3541")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "PerformanceAnalytics" version))
|
|
(sha256
|
|
(base32
|
|
"1czchsccsbdfjw743j6rm101q2q01pggyl8zmlva213pwm86zb3v"))))
|
|
(properties
|
|
`((upstream-name . "PerformanceAnalytics")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-xts" ,r-xts)
|
|
("r-zoo" ,r-zoo)))
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "http://r-forge.r-project.org/projects/returnanalytics/")
|
|
(synopsis "Econometric tools for performance and risk analysis")
|
|
(description "This is a collection of econometric functions for
|
|
performance and risk analysis. This package aims to aid practitioners and
|
|
researchers in utilizing the latest research in analysis of non-normal return
|
|
streams. In general, it is most tested on return (rather than price) data on
|
|
a regular scale, but most functions will work with irregular return data as
|
|
well, and increasing numbers of functions will work with P&L or price data
|
|
where possible.")
|
|
;; Either version may be picked.
|
|
(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-laeken
|
|
(package
|
|
(name "r-laeken")
|
|
(version "0.4.6")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "laeken" version))
|
|
(sha256
|
|
(base32
|
|
"1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-boot" ,r-boot)
|
|
("r-mass" ,r-mass)))
|
|
(home-page "https://cran.r-project.org/web/packages/laeken/")
|
|
(synopsis "Estimation of indicators on social exclusion and poverty")
|
|
(description "This package provides tools for the estimation of indicators
|
|
on social exclusion and poverty, as well as an implementation of Pareto tail
|
|
modeling for empirical income distributions.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-vcd
|
|
(package
|
|
(name "r-vcd")
|
|
(version "1.4-4")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "vcd" version))
|
|
(sha256
|
|
(base32
|
|
"1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-colorspace" ,r-colorspace)
|
|
("r-lmtest" ,r-lmtest)
|
|
("r-mass" ,r-mass)))
|
|
(home-page "https://cran.r-project.org/web/packages/vcd/")
|
|
(synopsis "Visualizing categorical data")
|
|
(description "This package provides visualization techniques, data sets,
|
|
summary and inference procedures aimed particularly at categorical data.
|
|
Special emphasis is given to highly extensible grid graphics. The package was
|
|
originally inspired by the book \"Visualizing Categorical Data\" by Michael
|
|
Friendly and is now the main support package for a new book, \"Discrete Data
|
|
Analysis with R\" by Michael Friendly and David Meyer (2015).")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-ica
|
|
(package
|
|
(name "r-ica")
|
|
(version "1.0-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ica" version))
|
|
(sha256
|
|
(base32
|
|
"1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/ica/")
|
|
(synopsis "Independent component analysis")
|
|
(description "This package provides tools for @dfn{Independent Component
|
|
Analysis} (ICA) using various algorithms: FastICA,
|
|
Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization
|
|
of Eigenmatrices} (JADE).")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-dtw
|
|
(package
|
|
(name "r-dtw")
|
|
(version "1.18-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "dtw" version))
|
|
(sha256
|
|
(base32
|
|
"1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-proxy" ,r-proxy)))
|
|
(home-page "http://dtw.r-forge.r-project.org/")
|
|
(synopsis "Dynamic Time Warping Algorithms")
|
|
(description "This package provides a comprehensive implementation of
|
|
@dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the
|
|
optimal (least cumulative distance) alignment between points of two time
|
|
series. Common DTW variants covered include local (slope) and global (window)
|
|
constraints, subsequence matches, arbitrary distance definitions,
|
|
normalizations, minimum variance matching, and so on.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-sdmtools
|
|
(package
|
|
(name "r-sdmtools")
|
|
(version "1.1-221")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "SDMTools" version))
|
|
(sha256
|
|
(base32
|
|
"1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"))))
|
|
(properties `((upstream-name . "SDMTools")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-r-utils" ,r-r-utils)))
|
|
(home-page "http://www.rforge.net/SDMTools/")
|
|
(synopsis "Species distribution modelling tools")
|
|
(description "This packages provides a set of tools for post processing
|
|
the outcomes of species distribution modeling exercises. It includes novel
|
|
methods for comparing models and tracking changes in distributions through
|
|
time. It further includes methods for visualizing outcomes, selecting
|
|
thresholds, calculating measures of accuracy and landscape fragmentation
|
|
statistics, etc.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public r-scatterplot3d
|
|
(package
|
|
(name "r-scatterplot3d")
|
|
(version "0.3-40")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "scatterplot3d" version))
|
|
(sha256
|
|
(base32
|
|
"0ababcj87kx7860mica9y2ydlhskxmgj9n46crx036cila512jc2"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://cran.r-project.org/web/packages/scatterplot3d/")
|
|
(synopsis "3D scatter plot")
|
|
(description "This package provides an implementation of scatter plots for
|
|
plotting. a three dimensional point cloud.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-ggridges
|
|
(package
|
|
(name "r-ggridges")
|
|
(version "0.4.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ggridges" version))
|
|
(sha256
|
|
(base32
|
|
"0kfa3icqdalqdg1klxjrhfl7if35d3wnsiyl86bprw5dyqyh3lh3"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-ggplot2" ,r-ggplot2)
|
|
("r-plyr" ,r-plyr)
|
|
("r-scales" ,r-scales)))
|
|
(home-page "https://github.com/clauswilke/ggridges")
|
|
(synopsis "Ridgeline plots in ggplot2")
|
|
(description
|
|
"Ridgeline plots provide a convenient way of visualizing changes in
|
|
distributions over time or space. This package enables the creation of such
|
|
plots in @code{ggplot2}.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-ggjoy
|
|
(package
|
|
(name "r-ggjoy")
|
|
(version "0.4.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "ggjoy" version))
|
|
(sha256
|
|
(base32
|
|
"1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-ggplot2" ,r-ggplot2)
|
|
("r-ggridges" ,r-ggridges)))
|
|
(home-page "https://github.com/clauswilke/ggjoy")
|
|
(synopsis "Joyplots in ggplot2")
|
|
(description "Joyplots provide a convenient way of visualizing changes in
|
|
distributions over time or space. This package enables the creation of such
|
|
plots in @code{ggplot2}.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-cli
|
|
(package
|
|
(name "r-cli")
|
|
(version "1.0.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "cli" version))
|
|
(sha256
|
|
(base32
|
|
"07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-assertthat" ,r-assertthat)
|
|
("r-crayon" ,r-crayon)))
|
|
(home-page "https://github.com/r-lib/cli#readme")
|
|
(synopsis "Helpers for developing command line interfaces")
|
|
(description "This package provides a suite of tools designed to build
|
|
attractive command line interfaces (CLIs). It includes tools for drawing
|
|
rules, boxes, trees, and Unicode symbols with ASCII alternatives.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-argparser
|
|
(package
|
|
(name "r-argparser")
|
|
(version "0.4")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "argparser" version))
|
|
(sha256
|
|
(base32
|
|
"0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://bitbucket.org/djhshih/argparser")
|
|
(synopsis "Command-line argument parser")
|
|
(description
|
|
"This package provides a cross-platform command-line argument parser
|
|
written purely in R with no external dependencies. It is useful with the
|
|
Rscript front-end and facilitates turning an R script into an executable
|
|
script.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public r-debugme
|
|
(package
|
|
(name "r-debugme")
|
|
(version "1.1.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "debugme" version))
|
|
(sha256
|
|
(base32
|
|
"1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-crayon" ,r-crayon)))
|
|
(home-page "https://github.com/r-lib/debugme#readme")
|
|
(synopsis "Debug R packages")
|
|
(description
|
|
"This package allows the user to specify debug messages as special string
|
|
constants, and control debugging of packages via environment variables.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-processx
|
|
(package
|
|
(name "r-processx")
|
|
(version "2.0.0.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "processx" version))
|
|
(sha256
|
|
(base32
|
|
"0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-assertthat" ,r-assertthat)
|
|
("r-crayon" ,r-crayon)
|
|
("r-debugme" ,r-debugme)
|
|
("r-r6" ,r-r6)))
|
|
(home-page "https://github.com/r-lib/processx3")
|
|
(synopsis "Execute and control system processes")
|
|
(description
|
|
"This package provides portable tools to run system processes in the
|
|
background. It can check if a background process is running; wait on a
|
|
background process to finish; get the exit status of finished processes; kill
|
|
background processes and their children; restart processes. It can read the
|
|
standard output and error of the processes, using non-blocking connections.
|
|
@code{processx} can poll a process for standard output or error, with a
|
|
timeout. It can also poll several processes at once.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-tsp
|
|
(package
|
|
(name "r-tsp")
|
|
(version "1.1-5")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "TSP" version))
|
|
(sha256
|
|
(base32
|
|
"03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"))))
|
|
(properties `((upstream-name . "TSP")))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-foreach" ,r-foreach)))
|
|
(home-page "https://cran.r-project.org/web/packages/TSP/")
|
|
(synopsis "Traveling salesperson problem (TSP)")
|
|
(description "This package provides basic infrastructure and some
|
|
algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the
|
|
traveling salesman problem).")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-qap
|
|
(package
|
|
(name "r-qap")
|
|
(version "0.1-1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "qap" version))
|
|
(sha256
|
|
(base32
|
|
"0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"))))
|
|
(build-system r-build-system)
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "http://cran.r-project.org/web/packages/qap/")
|
|
(synopsis "Heuristics for the quadratic assignment problem (QAP)")
|
|
(description "This package implements heuristics for the @dfn{quadratic
|
|
assignment problem} (QAP). Currently only a simulated annealing heuristic is
|
|
available.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-gclus
|
|
(package
|
|
(name "r-gclus")
|
|
(version "1.3.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "gclus" version))
|
|
(sha256
|
|
(base32
|
|
"02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs `(("r-cluster" ,r-cluster)))
|
|
(home-page "http://cran.r-project.org/web/packages/gclus/")
|
|
(synopsis "Clustering graphics")
|
|
(description "This package orders panels in scatterplot matrices and
|
|
parallel coordinate displays by some merit index. It contains various indices
|
|
of merit, ordering functions, and enhanced versions of @code{pairs} and
|
|
@code{parcoord} which color panels according to their merit level.")
|
|
(license license:gpl2+)))
|
|
|
|
(define-public r-webshot
|
|
(package
|
|
(name "r-webshot")
|
|
(version "0.5.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "webshot" version))
|
|
(sha256
|
|
(base32
|
|
"07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-jsonlite" ,r-jsonlite)
|
|
("r-magrittr" ,r-magrittr)
|
|
("r-processx" ,r-processx)
|
|
("r-withr" ,r-withr)))
|
|
(home-page "https://github.com/wch/webshot/")
|
|
(synopsis "Take screenshots of web pages")
|
|
(description
|
|
"Webshot makes it easy to take screenshots of web pages from within R.
|
|
It can also run Shiny applications locally and take screenshots of the
|
|
application; and it can render and screenshot static as well as interactive R
|
|
Markdown documents.")
|
|
(license license:gpl2)))
|
|
|
|
(define-public r-seriation
|
|
(package
|
|
(name "r-seriation")
|
|
(version "1.2-3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "seriation" version))
|
|
(sha256
|
|
(base32
|
|
"1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-cluster" ,r-cluster)
|
|
("r-colorspace" ,r-colorspace)
|
|
("r-dendextend" ,r-dendextend)
|
|
("r-gclus" ,r-gclus)
|
|
("r-gplots" ,r-gplots)
|
|
("r-mass" ,r-mass)
|
|
("r-qap" ,r-qap)
|
|
("r-registry" ,r-registry)
|
|
("r-tsp" ,r-tsp)))
|
|
(native-inputs `(("gfortran" ,gfortran)))
|
|
(home-page "http://s2.smu.edu/IDA/seriation/")
|
|
(synopsis "Infrastructure for ordering objects using seriation")
|
|
(description
|
|
"This package provides infrastructure for seriation with an
|
|
implementation of several seriation/sequencing techniques to reorder matrices,
|
|
dissimilarity matrices, and dendrograms. It also provides (optimally)
|
|
reordered heatmaps, color images and clustering visualizations like
|
|
dissimilarity plots, and visual assessment of cluster tendency plots (VAT and
|
|
iVAT).")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-heatmaply
|
|
(package
|
|
(name "r-heatmaply")
|
|
(version "0.14.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "heatmaply" version))
|
|
(sha256
|
|
(base32
|
|
"03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-assertthat" ,r-assertthat)
|
|
("r-colorspace" ,r-colorspace)
|
|
("r-dendextend" ,r-dendextend)
|
|
("r-ggplot2" ,r-ggplot2)
|
|
("r-gplots" ,r-gplots)
|
|
("r-htmlwidgets" ,r-htmlwidgets)
|
|
("r-magrittr" ,r-magrittr)
|
|
("r-plotly" ,r-plotly)
|
|
("r-rcolorbrewer" ,r-rcolorbrewer)
|
|
("r-reshape2" ,r-reshape2)
|
|
("r-scales" ,r-scales)
|
|
("r-seriation" ,r-seriation)
|
|
("r-viridis" ,r-viridis)
|
|
("r-webshot" ,r-webshot)))
|
|
(home-page "https://cran.r-project.org/package=heatmaply")
|
|
(synopsis "Interactive cluster heat maps using plotly")
|
|
(description "Heatmaps are used in many fields for visualizing
|
|
observations, correlations, missing values patterns, and more. Interactive
|
|
heatmaps allow the inspection of specific value by hovering the mouse over a
|
|
cell, as well as zooming into a region of the heatmap by dragging a rectangle
|
|
around the relevant area. This work is based on the @code{ggplot2} and
|
|
@code{plotly.js} engine. It produces similar heatmaps as @code{heatmap.2} or
|
|
@code{d3heatmap}, with the advantage of speed, the ability to zoom from the
|
|
dendrogram panes, and the placing of factor variables in the sides of the
|
|
heatmap.")
|
|
(license (list license:gpl2 license:gpl3))))
|
|
|
|
(define-public r-xfun
|
|
(package
|
|
(name "r-xfun")
|
|
(version "0.1")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "xfun" version))
|
|
(sha256
|
|
(base32
|
|
"1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://github.com/yihui/xfun")
|
|
(synopsis "Miscellaneous functions")
|
|
(description
|
|
"This package provides miscellaneous functions commonly used in other
|
|
packages maintained by Yihui Xie.")
|
|
(license license:expat)))
|
|
|
|
(define-public r-utf8
|
|
(package
|
|
(name "r-utf8")
|
|
(version "1.1.3")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "utf8" version))
|
|
(sha256
|
|
(base32
|
|
"03s4j6059q0nly68vpk6wy3p3f5ypakw93fj35kzd82b4z1r9cs3"))))
|
|
(build-system r-build-system)
|
|
(home-page "https://github.com/patperry/r-utf8")
|
|
(synopsis "Unicode text processing")
|
|
(description
|
|
"This package provides tools to process and print UTF-8 encoded
|
|
international text (Unicode). Input, validate, normalize, encode, format, and
|
|
display.")
|
|
(license license:asl2.0)))
|
|
|
|
(define-public r-pillar
|
|
(package
|
|
(name "r-pillar")
|
|
(version "1.1.0")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "pillar" version))
|
|
(sha256
|
|
(base32
|
|
"1gh3j2pbbf5y4d5nyqnlr0x27jjyvjjspcccmw61airs1n6rx8jq"))))
|
|
(build-system r-build-system)
|
|
(propagated-inputs
|
|
`(("r-cli" ,r-cli)
|
|
("r-crayon" ,r-crayon)
|
|
("r-rlang" ,r-rlang)
|
|
("r-utf8" ,r-utf8)))
|
|
(home-page "https://github.com/r-lib/pillar")
|
|
(synopsis "Coloured formatting for columns")
|
|
(description
|
|
"This package provides a @code{pillar} generic designed for formatting
|
|
columns of data using the full range of colours provided by modern
|
|
terminals.")
|
|
(license license:gpl3)))
|
|
|
|
(define-public r-uuid
|
|
(package
|
|
(name "r-uuid")
|
|
(version "0.1-2")
|
|
(source
|
|
(origin
|
|
(method url-fetch)
|
|
(uri (cran-uri "uuid" version))
|
|
(sha256
|
|
(base32
|
|
"1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"))))
|
|
(build-system r-build-system)
|
|
(home-page "http://www.rforge.net/uuid")
|
|
(synopsis "Tools for generating and handling of UUIDs")
|
|
(description
|
|
"This package provides tools for generating and handling of
|
|
@dfn{Universally Unique Identifiers} (UUIDs).")
|
|
(license license:expat)))
|