guix-devel/gnu/packages
Ben Woodcroft da4a707c88
gnu: roary: Update to 3.11.0.
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
..
aux-files
bootstrap
patches gnu: gcc-4.7: Resurrect building with gcc-5.4.0. 2017-11-07 22:03:51 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
admin.scm gnu: nnn: Update to 1.5. 2017-11-06 23:07:19 +02:00
adns.scm
aidc.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
algebra.scm gnu: giac-xcas: Update to 1.4.9-17. 2017-10-29 10:06:44 +01:00
android.scm
animation.scm gnu: Add papagayo. 2017-10-24 07:54:43 +02:00
anthy.scm
apl.scm
apr.scm gnu: apr-util: Update to 1.6.1 [fixes CVE-2017-12618]. 2017-10-30 21:46:18 -04:00
aspell.scm gnu: Add Catalan dictionary for Aspell. 2017-10-27 11:57:47 -07:00
assembly.scm gnu: lightning: Update to 2.1.2. 2017-10-05 10:36:06 -04:00
astronomy.scm
attr.scm
audio.scm gnu: faust-2: Update to 2.1.0. 2017-10-22 21:25:28 +02:00
augeas.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm gnu: axoloti-runtime: Update home page. 2017-10-17 17:32:20 +02:00
backup.scm gnu: borg: Update to 1.1.2. 2017-11-05 20:36:05 -05:00
base.scm gnu: glibc: Fix CVE-2017-15670, CVE-2017-15671. 2017-10-22 23:13:09 +02:00
bash.scm
bdw-gc.scm
benchmark.scm gnu: fio: Update to 3.2. 2017-11-05 16:16:51 +01:00
bioinformatics.scm gnu: roary: Update to 3.11.0. 2017-11-09 18:12:32 +10:00
bison.scm
bittorrent.scm gnu: tremc: Update to 0.9.0-1.9755b50. 2017-11-08 19:32:32 -05:00
boost.scm
bootloaders.scm gnu: u-boot: Only install 'MLO' output if it exists. 2017-11-06 22:54:28 +02:00
bootstrap.scm
build-tools.scm gnu: meson: Update to 0.43.0. 2017-10-13 22:47:33 +02:00
busybox.scm
c.scm
calcurse.scm gnu: Fix Leo Famulari's copyright statement in (gnu packages calcurse). 2017-10-25 14:45:43 -04:00
calendar.scm gnu: khal: Update to 0.9.8. 2017-10-07 13:14:50 -04:00
ccache.scm
cdrom.scm
certs.scm
check.scm gnu: cppcheck: Update to 1.81. 2017-10-20 02:16:51 +02:00
chez.scm
ci.scm
cinnamon.scm gnu: Add cinnamon-desktop. 2017-10-15 20:29:31 +01:00
cmake.scm
cobol.scm
code.scm
commencement.scm gnu: gcc: Add unversioned 'gcc-toolchain' variable. 2017-10-27 12:35:49 -07:00
compression.scm gnu: Add perl-archive-extract. 2017-10-24 18:38:31 +02:00
compton.scm
conkeror.scm gnu: conkeror: Update to 1.1.0. 2017-10-29 11:21:12 +01:00
conky.scm
connman.scm
cook.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-vcd. 2017-11-08 17:34:35 +01:00
cross-base.scm
crypto.scm gnu: Add python2-roca-detect. 2017-10-25 22:26:15 -07:00
cryptsetup.scm
cups.scm gnu: hplip: Update to 3.17.10. 2017-10-18 23:25:04 +02:00
curl.scm gnu: curl: Update replacement to 7.56.1 [fixes CVE-2017-1000257]. 2017-10-24 08:09:47 +02:00
cyrus-sasl.scm
databases.scm gnu: Add r-rmysql. 2017-11-07 08:15:43 +01:00
datamash.scm
datastructures.scm
dav.scm
dc.scm
debug.scm
dejagnu.scm gnu: dejagnu: Update to 1.6.1. 2017-11-02 13:12:15 +02:00
dico.scm
dictionaries.scm
direct-connect.scm
disk.scm gnu: gparted: Update to 0.30.0. 2017-10-11 21:53:36 +02:00
display-managers.scm gnu: sddm: Fix FTBFS after Qt paths change. 2017-10-22 13:22:59 +02:00
django.scm gnu: python-pytest-django: Use python-pytest@3. 2017-10-23 14:49:30 +02:00
djvu.scm
dns.scm gnu: knot: Update to 2.6.1. 2017-11-02 21:10:18 +01:00
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
ebook.scm gnu: calibre: Install mimetypes. 2017-11-05 17:24:01 +01:00
ed.scm
education.scm
electronics.scm
elf.scm
elixir.scm
emacs.scm gnu: emacs-undo-tree: Parameterize source uri. 2017-11-06 06:18:26 +02:00
embedded.scm gnu: Add python2-libmpsse. 2017-10-23 19:11:19 +02:00
enchant.scm
engineering.scm gnu: fastcap: Use texlive-tiny. 2017-11-08 17:15:24 +01:00
enlightenment.scm gnu: enlightenment: Update to 0.22.0. 2017-11-02 23:05:11 +02:00
entr.scm
erlang.scm gnu: Fix the hashes of mutated GitHub archives. 2017-10-20 22:55:51 +02:00
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: Add glusterfs. 2017-11-07 23:32:46 +01:00
file.scm
finance.scm gnu: electrum: Update to 3.0. 2017-11-07 00:12:10 +01:00
firmware.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
flashing-tools.scm Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
flex.scm
fltk.scm
fonts.scm gnu: Fix the hashes of mutated GitHub archives. 2017-10-20 22:55:51 +02:00
fontutils.scm gnu: libuninameslist: Update to 20170807. 2017-11-06 23:07:13 +02:00
forth.scm
fpga.scm
freedesktop.scm gnu: weston: Update to 3.0.0. 2017-11-05 17:24:00 +01:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: libfilezilla: Update to 0.11.1. 2017-11-01 01:02:04 +01:00
fvwm.scm
game-development.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
games.scm gnu: retroarch: Enable Wayland support. 2017-11-05 17:24:00 +01:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc-4.7: Resurrect building with gcc-5.4.0. 2017-11-07 22:03:51 +01:00
gd.scm
gdb.scm
geo.scm gnu: gnome-maps: Update to 3.26.2. 2017-11-02 14:42:58 -04:00
gettext.scm
ghostscript.scm gnu: ghostscript: Replace with 9.22 [security fixes]. 2017-10-10 10:55:01 -04:00
gimp.scm
gkrellm.scm
gl.scm gnu: mesa: Disable svga driver for armhf. 2017-10-14 10:22:41 +02:00
glib.scm Revert "gnu: itstool: Update to 2.0.4." 2017-11-02 23:00:23 +01:00
gnome.scm gnu: totem: Enable parallel build. 2017-11-08 20:43:40 -05:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: Add GnuCash documentation. 2017-10-13 01:05:54 -07:00
gnunet.scm gnu: gnurl: Update to 7.56.1. 2017-10-24 17:19:15 -04:00
gnupg.scm gnu: gnupg: Update to 2.2.2. 2017-11-07 19:34:29 +02:00
gnustep.scm
gnuzilla.scm gnu: icecat: Add more fixes from upstream mozilla-esr52. 2017-10-29 15:29:18 -04:00
gobby.scm
golang.scm gnu: go: Update to 1.9.2. 2017-10-26 12:14:33 -04:00
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: r-rgraphviz: Update to 2.22.0. 2017-11-07 08:15:27 +01:00
graphics.scm gnu: Fix the hashes of mutated GitHub archives. 2017-10-20 22:55:51 +02:00
graphviz.scm gnu: Add python-pydot. 2017-11-07 21:03:15 +01:00
groff.scm
gsasl.scm
gstreamer.scm gnu: Add ffmpeg@3.3 and use it on packages that fail with 3.4. 2017-10-27 00:01:53 +02:00
gtk.scm gnu: ganv-devel: Update to 1.5.4-12f7d6b04. 2017-10-22 12:13:36 +02:00
guile-wm.scm
guile.scm gnu: guile-git: Update snapshot. 2017-11-07 00:12:11 +01:00
gv.scm
gxmessage.scm
ham-radio.scm
haskell.scm gnu: Add ghc-aws. 2017-10-22 15:32:19 -07:00
hexedit.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm gnu: icu4c: Fix CVE-2017-14952. 2017-10-24 13:10:35 -04:00
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: feh: Update to 2.22.2. 2017-11-07 22:16:27 +01:00
image.scm gnu: exiv2: Add upstream security fixes. 2017-10-27 00:50:09 +02:00
imagemagick.scm gnu: imagemagick: Update to 6.9.9-21. 2017-11-01 21:26:50 +01:00
indent.scm
inklingreader.scm
inkscape.scm gnu: inkscape: Fix FTBFS with Poppler >= 0.58. 2017-10-05 22:32:23 +02:00
irc.scm gnu: irssi: Update to 1.0.5 [security fixes]. 2017-10-22 17:24:33 +02:00
iso-codes.scm gnu: iso-codes: Update to 3.76. 2017-11-03 09:34:13 -04:00
java.scm gnu: antlr3-3.3: Prettify build phases. 2017-11-07 12:39:50 +01:00
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: prison: Move to be in alphabetical order. 2017-11-05 10:56:40 +01:00
kde.scm gnu: libksysguard: Update to 5.11.2. 2017-11-05 10:56:39 +01:00
kerberos.scm gnu: mit-krb5: Replace with 1.15.2 [fixes CVE-2017-{11368,11462}]. 2017-10-09 13:30:01 -04:00
key-mon.scm
kodi.scm gnu: Add kodi-cli. 2017-11-03 06:46:03 +03:00
language.scm
ld-wrapper.in
ldc.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm gnu: Add python-pycanberra. 2017-10-27 08:25:55 -04:00
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm gnu: ruby-ffi: Move to libffi.scm. 2017-10-15 11:57:15 +03:00
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libreoffice: Don't replace "/bin/sh" reference with bash. 2017-10-10 18:38:01 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libupnp.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
libusb.scm
lighting.scm gnu: ola: Update to 0.10.5. 2017-10-30 17:20:43 +01:00
linux.scm gnu: psm: Only use as an input on supported-systems. 2017-11-07 20:41:08 +02:00
lirc.scm
lisp.scm Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
llvm.scm
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm gnu: lxqt-common: Remove. 2017-10-22 16:05:26 -07:00
m4.scm
machine-learning.scm
mail.scm gnu: notmuch: Update to 0.25.2. 2017-11-07 20:01:03 +01:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mate.scm gnu: Order module imports in (gnu packages mate) alphabetically. 2017-10-19 01:22:18 +02:00
maths.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
mc.scm
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: Add ffmpeg@3.3 and use it on packages that fail with 3.4. 2017-10-27 00:01:53 +02:00
microcom.scm
mingw.scm gnu: Remove "open source" from descriptions. 2017-11-08 16:21:53 +01:00
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: lame: Update to 3.100. 2017-10-22 00:39:26 +02:00
mpd.scm gnu: ncmpcpp: Update to 0.8.1. 2017-10-31 18:13:53 -04:00
mpi.scm gnu: psm: Only use as an input on supported-systems. 2017-11-07 20:41:08 +02:00
mtools.scm
multiprecision.scm
music.scm gnu: sorcer: Fix building on non-Intel hardware. 2017-10-26 08:37:40 +03:00
musl.scm gnu: musl: Update to 1.1.17. 2017-10-19 17:37:25 -04:00
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: quagga: Update to 1.2.2 [fix CVE-2017-16227]. 2017-10-30 20:42:13 -04:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm gnu: node: Update to 8.7.0. 2017-10-26 12:57:43 +02:00
noweb.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm Fix ambiguous imports. 2017-11-07 00:12:10 +01:00
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}]. 2017-11-08 19:00:07 -05:00
parallel.scm gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566]. 2017-11-08 19:32:31 -05:00
password-utils.scm gnu: keepassxc: Update to 2.2.1. 2017-10-22 16:55:36 +02:00
patchutils.scm gnu: colordiff: Use HTTPS home page. 2017-10-20 02:16:54 +02:00
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Fix CVE-2017-{14685,14686,14687}. 2017-10-24 13:44:34 -04:00
pem.scm
perl-web.scm
perl.scm gnu: Add perl-test-command. 2017-11-01 20:29:32 +01:00
photo.scm
php.scm gnu: Update php to 7.1.11. 2017-10-28 14:19:15 +02:00
pkg-config.scm
plotutils.scm
polkit.scm
popt.scm
pretty-print.scm
profiling.scm gnu: Add scorep-openmpi. 2017-10-03 17:07:55 +02:00
protobuf.scm gnu: ola: Build with protobuf@2. 2017-10-20 19:48:33 +02:00
pth.scm
pulseaudio.scm Merge branch 'master' into staging 2017-10-05 00:45:38 +02:00
pumpio.scm
pv.scm
python.scm gnu: python-icalendar: Update to 4.0.0. 2017-11-08 18:36:29 -05:00
qt.scm gnu: qt: Set 'EffectiveSourcePaths' to 'qtbase' for submodules. 2017-10-22 19:37:35 +08:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2017-11-01. 2017-11-04 00:07:39 +01:00
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-ffi: Move to libffi.scm. 2017-10-15 11:57:15 +03:00
rush.scm
rust.scm
samba.scm gnu: samba: Update to 4.7.1. 2017-11-04 00:07:40 +01:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm gnu: screen: Update to 4.6.2. 2017-10-24 21:26:19 +03:00
scribus.scm gnu: scribus: Update to 1.5.3. Add inputs. 2017-10-29 09:09:56 +01:00
scsi.scm
sdcc.scm
sdl.scm gnu: sdl2: Update to 2.0.7 and enable Wayland backend. 2017-11-05 18:14:19 +01:00
search.scm
security-token.scm gnu: ccid: Update to 1.4.28. 2017-10-12 19:24:59 +02:00
selinux.scm
serialization.scm gnu: Fix the hashes of mutated GitHub archives. 2017-10-20 22:55:51 +02:00
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
spice.scm gnu: spice-gtk: Enable GObject introspection support. 2017-10-19 12:17:43 +02:00
ssh.scm gnu: Add pdsh. 2017-10-05 15:17:26 +02:00
sssd.scm gnu: sssd: Disable failing test. 2017-11-04 00:07:40 +01:00
stalonetray.scm
statistics.scm gnu: r-prabclus: Update description. 2017-11-07 23:32:46 +01:00
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm gnu: syncthing: Update to 0.14.40. 2017-11-08 17:24:02 -05:00
syndication.scm gnu: Add newsboat. 2017-10-29 22:02:44 +02:00
synergy.scm gnu: synergy: Update repository URI and hash. 2017-10-26 15:45:14 -07:00
task-management.scm
tbb.scm
tcl.scm gnu: expect: Change home-page to http://expect.sourceforge.net/. 2017-11-07 18:50:46 +03:00
telephony.scm
terminals.scm gnu: Add sakura. 2017-10-31 09:41:52 -04:00
tex.scm gnu: texlive-bin: Fix FTBFS with Poppler >= 0.58. 2017-10-06 00:49:50 +02:00
texinfo.scm
text-editors.scm
textutils.scm gnu: Add python-editdistance. 2017-10-22 13:19:58 +02:00
time.scm gnu: time: Update license. 2017-11-08 10:52:09 +02:00
tls.scm gnu: openssl@1.1: Update to 1.1.0g [fixes CVE-2017-3735, CVE-2017-2736]. 2017-11-02 22:21:59 +01:00
tmux.scm gnu: tmux: Update to 2.6. 2017-10-15 21:37:51 -04:00
tor.scm gnu: tor: Update to 0.3.1.8. 2017-10-25 18:13:09 +02:00
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.0.20171102. 2017-11-02 21:10:18 +01:00
uucp.scm
valgrind.scm
version-control.scm gnu: mercurial: Update to 4.4.1. 2017-11-07 20:23:29 +01:00
video.scm gnu: mediainfo: Change order of custom phases. 2017-11-07 19:34:25 +02:00
vim.scm gnu: vim: Update to 8.0.1274 [fixes CVE-2017-1000382]. 2017-11-07 20:21:46 +01:00
virtualization.scm gnu: lxc: Update to 2.1.1. 2017-10-31 19:28:09 +08:00
vpn.scm
w3m.scm
wdiff.scm
web-browsers.scm
web.scm gnu: Add websockify. 2017-11-07 21:56:42 +01:00
webkit.scm gnu: webkitgtk: Update to 2.18.2. 2017-10-30 20:07:00 -04:00
wget.scm gnu: wget: Update to 1.19.2 [fixes CVE-2017-13089 and CVE-2017-13090]. 2017-10-26 23:45:17 +02:00
wicd.scm
wine.scm gnu: wine64: Add aarch64-linux to supported-systems. 2017-11-01 10:17:18 +02:00
wm.scm gnu: awesome: Update to 4.2. 2017-11-07 18:09:13 +01:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: rofi: Update to 1.4.2. 2017-10-17 21:05:54 +02:00
xfce.scm
xfig.scm
xiph.scm gnu: speexdsp: Fix building on aarch64-linux. 2017-10-20 16:23:48 +03:00
xml.scm gnu: perl-xml-libxml: Update to 2.0132. 2017-10-30 17:20:07 +01:00
xnee.scm
xorg.scm gnu: bdftopcf: Update to 1.1. 2017-11-07 23:29:23 +01:00
zile.scm gnu: zile: Update to 2.4.14. 2017-10-07 17:08:32 +02:00