323 lines
12 KiB
Scheme
323 lines
12 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
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;;; Copyright © 2014 John Darrington <jmd@gnu.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages maths)
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#:use-module (gnu packages)
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#:use-module ((guix licenses)
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#:renamer (symbol-prefix-proc 'license:))
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages fltk)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gettext)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gd)
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#:use-module (gnu packages ghostscript)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages less)
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#:use-module (gnu packages xorg)
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#:use-module (gnu packages gl)
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#:use-module (gnu packages multiprecision)
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#:use-module (gnu packages pcre)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages texinfo)
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#:use-module (gnu packages texlive)
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#:use-module (gnu packages xml))
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(define-public units
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(package
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(name "units")
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(version "2.11")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/units/units-" version
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".tar.gz"))
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(sha256 (base32
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"1gjs3wc212aaiq4r76hx9nl1h3fa39n0ljwl9420d6ixl3rdmdjk"))))
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(build-system gnu-build-system)
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(synopsis "Conversion between thousands of scales")
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(description
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"GNU Units converts between measured quantities between units of
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measure. It can handle scale changes through adaptive usage of standard
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scale prefixes (micro-, kilo-, etc.). It can also handle nonlinear
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conversions such as Fahrenheit to Celsius. Its interpreter is powerful
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enough to be used effectively as a scientific calculator.")
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(license license:gpl3+)
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(home-page "http://www.gnu.org/software/units/")))
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(define-public gsl
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(package
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(name "gsl")
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(version "1.16")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/gsl/gsl-"
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version ".tar.gz"))
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(sha256
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(base32
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"0lrgipi0z6559jqh82yx8n4xgnxkhzj46v96dl77hahdp58jzg3k"))))
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(build-system gnu-build-system)
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(arguments
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`(#:parallel-tests? #f
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#:phases
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(alist-replace
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'configure
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(lambda* (#:key target system outputs #:allow-other-keys #:rest args)
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(let ((configure (assoc-ref %standard-phases 'configure)))
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;; disable numerically unstable test on i686, see thread at
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;; http://lists.gnu.org/archive/html/bug-gsl/2011-11/msg00019.html
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(if (string=? (or target system) "i686-linux")
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(substitute* "ode-initval2/Makefile.in"
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(("TESTS = \\$\\(check_PROGRAMS\\)") "TESTS =")))
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(apply configure args)))
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%standard-phases)))
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(home-page "http://www.gnu.org/software/gsl/")
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(synopsis "Numerical library for C and C++")
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(description
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"The GNU Scientific Library is a library for numerical analysis in C
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and C++. It includes a wide range of mathematical routines, with over 1000
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functions in total. Subject areas covered by the library include:
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differential equations, linear algebra, Fast Fourier Transforms and random
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numbers.")
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(license license:gpl3+)))
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(define-public glpk
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(package
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(name "glpk")
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(version "4.54")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/glpk/glpk-"
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version ".tar.gz"))
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(sha256
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(base32
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"18gr2anv8gyps6j9f22k7li6w07glvww666sdqblvlq2hh3whwmb"))))
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(build-system gnu-build-system)
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(inputs
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`(("gmp" ,gmp)))
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(arguments
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`(#:configure-flags '("--with-gmp")))
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(home-page "http://www.gnu.org/software/glpk/")
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(synopsis "GNU Linear Programming Kit, supporting the MathProg language")
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(description
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"GLPK is a C library for solving large-scale linear programming (LP),
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mixed integer programming (MIP), and other related problems. It supports the
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GNU MathProg modeling language, a subset of the AMPL language, and features a
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translator for the language. In addition to the C library, a stand-alone
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LP/MIP solver is included in the package.")
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(license license:gpl3+)))
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(define-public pspp
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(package
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(name "pspp")
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(version "0.8.2")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/pspp/pspp-"
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version ".tar.gz"))
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(sha256
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(base32
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"1w7h3dglgx0jlq1wb605b8pgfsk2vr1q2q2rj7bsajh9ihbcsixr"))))
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(build-system gnu-build-system)
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(inputs
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`(("cairo" ,cairo)
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("fontconfig" ,fontconfig)
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("gettext" ,gnu-gettext)
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("gsl" ,gsl)
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("libxml2" ,libxml2)
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("pango" ,pango)
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("readline" ,readline)
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("gtk" ,gtk+-2)
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("gtksourceview" ,gtksourceview)
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("zlib" ,zlib)))
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(native-inputs
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`(("perl" ,perl)
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("pkg-config" ,pkg-config)))
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(home-page "http://www.gnu.org/software/pspp/")
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(synopsis "Statistical analysis")
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(description
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"GNU PSPP is a statistical analysis program. It can perform
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descriptive statistics, T-tests, linear regression and non-parametric tests.
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It features both a graphical interface as well as command-line input. PSPP is
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designed to interoperate with Gnumeric, LibreOffice and OpenOffice. Data can
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be imported from spreadsheets, text files and database sources and it can be
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output in text, PostScript, PDF or HTML.")
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(license license:gpl3+)))
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(define-public lapack
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(package
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(name "lapack")
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(version "3.5.0")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "http://www.netlib.org/lapack/lapack-"
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version ".tgz"))
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(sha256
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(base32
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"0lk3f97i9imqascnlf6wr5mjpyxqcdj73pgj97dj2mgvyg9z1n4s"))))
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(build-system cmake-build-system)
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(home-page "http://www.netlib.org/lapack/")
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(inputs `(("fortran" ,gfortran-4.8)
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("python" ,python-2)))
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(arguments
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`(#:modules ((guix build cmake-build-system)
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(guix build utils)
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(srfi srfi-1))
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#:phases (alist-cons-before
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'check 'patch-python
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(lambda* (#:key inputs #:allow-other-keys)
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(let ((python (assoc-ref inputs "python")))
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(substitute* "lapack_testing.py"
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(("/usr/bin/env python") python))))
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%standard-phases)))
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(synopsis "Library for numerical linear algebra")
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(description
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"LAPACK is a Fortran 90 library for solving the most commonly occurring
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problems in numerical linear algebra.")
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(license (license:bsd-style "file://LICENSE"
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"See LICENSE in the distribution."))))
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(define-public gnuplot
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(package
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(name "gnuplot")
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(version "4.6.3")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/gnuplot/gnuplot/"
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version "/gnuplot-" version ".tar.gz"))
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(sha256
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(base32
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"1xd7gqdhlk7k1p9yyqf9vkk811nadc7m4si0q3nb6cpv4pxglpyz"))))
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(build-system gnu-build-system)
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(inputs `(("readline" ,readline)
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("cairo" ,cairo)
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("pango" ,pango)
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("gd" ,gd)))
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(native-inputs `(("texlive" ,texlive)
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("pkg-config" ,pkg-config)))
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(home-page "http://www.gnuplot.info")
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(synopsis "Command-line driven graphing utility")
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(description "Gnuplot is a portable command-line driven graphing
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utility. It was originally created to allow scientists and students to
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visualize mathematical functions and data interactively, but has grown to
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support many non-interactive uses such as web scripting. It is also used as a
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plotting engine by third-party applications like Octave.")
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;; X11 Style with the additional restriction that derived works may only be
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;; distributed as patches to the original.
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(license (license:fsf-free
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"http://gnuplot.cvs.sourceforge.net/gnuplot/gnuplot/Copyright"))))
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(define-public hdf5
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(package
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(name "hdf5")
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(version "1.8.12")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-"
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version ".tar.bz2"))
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(sha256
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(base32 "0f9n0v3p3lwc7564791a39c6cn1d3dbrn7d1j3ikqsi27a8hy23d"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases
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(alist-cons-before
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'configure 'patch-configure
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(lambda _
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(substitute* "configure"
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(("/bin/mv") "mv")))
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%standard-phases)))
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(outputs '("out" "bin" "lib" "include"))
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(home-page "http://www.hdfgroup.org")
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(synopsis "Management suite for extremely large and complex data")
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(description "HDF5 is a suite that makes possible the management of
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extremely large and complex data collections.")
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(license (license:x11-style
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"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
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;; For a fully featured Octave, users are strongly recommended also to install
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;; the following packages: texinfo, less, ghostscript, gnuplot.
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(define-public octave
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(package
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(name "octave")
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(version "3.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/octave/octave-"
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version ".tar.gz"))
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(sha256
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(base32
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"0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l"))))
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(build-system gnu-build-system)
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(inputs
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`(("lapack" ,lapack)
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("readline" ,readline)
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("glpk" ,glpk)
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("curl" ,curl)
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("pcre" ,pcre)
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("fltk" ,fltk)
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("fontconfig" ,fontconfig)
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("freetype" ,freetype)
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("hdf5-lib" ,hdf5 "lib")
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("hdf5-include" ,hdf5 "include")
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("libxft" ,libxft)
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("mesa" ,mesa)
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("zlib" ,zlib)))
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(native-inputs
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`(("gfortran" ,gfortran-4.8)
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("pkg-config" ,pkg-config)
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("perl" ,perl)
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;; The following inputs are not actually used in the build process. However, the
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;; ./configure gratuitously tests for their existence and assumes that programs not
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;; present at build time are also not, and can never be, available at run time!
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;; If these inputs are therefore not present, support for them will be built out.
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;; However, Octave will still run without them, albeit without the features they
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;; provide.
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("less" ,less)
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("texinfo" ,texinfo)
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("ghostscript" ,ghostscript)
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("gnuplot" ,gnuplot)))
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(arguments
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`(#:configure-flags (list (string-append "--with-shell="
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(assoc-ref %build-inputs "bash")
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"/bin/sh"))))
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(home-page "http://www.gnu.org/software/octave/")
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(synopsis "High-level language for numerical computation")
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(description "GNU Octave is a high-level interpreted language that is specialized
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for numerical computations. It can be used for both linear and non-linear
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applications and it provides great support for visualizing results. Work may
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be performed both at the interactive command-line as well as via script
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files.")
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(license license:gpl3+)))
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