guix-devel/gnu/packages
Ricardo Wurmus 296da6e624
gnu: r-seurat: Update to 3.0.0.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0.
[propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc,
r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and
r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang,
r-rsvd, r-scales, and r-sctransform.
2019-04-19 15:38:47 +02:00
..
aux-files gnu: Add linux-libre-arm-veyron. 2019-04-03 18:21:42 +02:00
bootstrap
patches gnu: webkitgtk: Fix build on i686. 2019-04-16 23:39:49 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: ansible: Update to 2.7.10. 2019-04-11 05:32:48 +02:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: singular: Update to 4.1.2p1. 2019-04-16 22:40:04 +02:00
android.scm
animation.scm gnu: synfig, synfigstudio: Update to 1.2.2. 2019-04-14 20:15:29 +02:00
anthy.scm
antivirus.scm gnu: clamav: Update to 0.101.2. 2019-04-11 05:32:49 +02:00
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm gnu: fasm: Update to 1.73.10. 2019-04-11 05:32:49 +02:00
astronomy.scm gnu: gnuastro: Update to 0.9. 2019-04-18 17:00:46 +03:00
attr.scm
audio.scm gnu: qsynth: Update to 0.5.6. 2019-04-17 06:15:25 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: burp: Update to 2.3.4. 2019-04-14 20:15:29 +02:00
base.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-mlinterfaces: Update to 1.62.1. 2019-04-06 23:13:26 +02:00
bioinformatics.scm gnu: r-seurat: Update to 3.0.0. 2019-04-19 15:38:47 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm
bootstrap.scm
build-tools.scm
busybox.scm
c.scm gnu: Add udunits. 2019-03-24 23:44:12 +01:00
calcurse.scm
calendar.scm gnu: khal: Use HTTPS home page. 2019-04-14 20:15:29 +02:00
ccache.scm
cdrom.scm gnu: Add cdemu-client. 2019-04-14 19:01:10 +02:00
certs.scm
check.scm gnu: googletest: Don't use unstable tarball. 2019-03-28 12:14:15 +02:00
chemistry.scm
chez.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
chromium.scm gnu: ungoogled-chromium: Update to 73.0.3683.103-0.4c7fb6d. 2019-04-07 23:56:47 +02:00
ci.scm
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
compression.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
compton.scm
conky.scm gnu: conky: Update to 1.11.3. 2019-04-15 06:16:16 +02:00
connman.scm gnu: connman: Update to 1.37. 2019-04-15 06:26:17 +02:00
cook.scm
coq.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-sctransform. 2019-04-19 15:38:46 +02:00
cross-base.scm
crypto.scm gnu: googletest: Don't use unstable tarball. 2019-03-28 12:14:15 +02:00
cryptsetup.scm
cups.scm
curl.scm gnu: libssh2@1.8.0: Move to ssh.scm. 2019-04-07 18:04:34 +02:00
cyrus-sasl.scm
databases.scm gnu: Add sqitch. 2019-04-14 10:45:59 +01:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm gnu: ncdc: Update to 1.21. 2019-04-15 06:27:17 +02:00
debian.scm
debug.scm gnu: creduce: Upgrade to 2.8.0. 2019-04-11 12:17:01 -05:00
dejagnu.scm
dico.scm
dictionaries.scm
digest.scm
direct-connect.scm
disk.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
display-managers.scm gnu: SDDM: Update to 0.18.1. 2019-03-31 21:26:17 +02:00
django.scm gnu: python-django-overextends: Use INVOKE. 2019-03-27 00:04:07 +01:00
djvu.scm
dlang.scm gnu: dub: Don't use unstable tarball. 2019-04-10 20:54:05 +02:00
dns.scm gnu: knot: Update to 2.8.1. 2019-04-15 06:08:33 +02:00
docbook.scm
docker.scm gnu: docker, docker-cli: Update to 18.09.5. 2019-04-16 22:40:04 +02:00
documentation.scm
dunst.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir.scm gnu: elixir: Update to 1.8.1. 2019-03-21 20:48:12 +01:00
emacs-xyz.scm gnu: emacs-irony-mode: Fix typo in description. 2019-04-17 03:21:08 +02:00
emacs.scm gnu: emacs: Update to 26.2. 2019-04-12 18:42:43 -04:00
embedded.scm gnu: fc-host-tools: Fix fc-loadtool. 2019-04-12 16:30:10 +02:00
emulators.scm gnu: mupen64plus-video-z64: Don't use unstable tarball. 2019-04-14 20:15:28 +02:00
enchant.scm
engineering.scm gnu: Add gnucap. 2019-04-09 13:12:24 +05:30
enlightenment.scm gnu: terminology: Run test suite. 2019-04-07 10:49:30 +03:00
entr.scm gnu: entr: Update to 4.2. 2019-04-05 06:25:24 +02:00
erlang.scm gnu: Add emacs-erlang. 2019-04-07 22:23:52 +02:00
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: apfs-fuse: Fix ’file system’ spelling. 2019-04-16 19:43:42 +02:00
file.scm gnu: Use 'this-package' as a native input instead of 'self-native-input?'. 2019-03-30 15:19:32 +01:00
finance.scm gnu: electron-cash: Update to 4.0.1. 2019-04-09 10:40:34 +02:00
firmware.scm gnu: arm-trusted-firmware: Update to 2.1. 2019-04-11 13:46:40 +02:00
flashing-tools.scm gnu: avrdude: Use @acronym{} mark-up. 2019-04-16 22:40:04 +02:00
flex.scm
fltk.scm
fonts.scm gnu: Add font-iosevka-slab. 2019-03-29 21:09:11 +01:00
fontutils.scm
forth.scm
fpga.scm gnu: gtkwave: Update to 3.3.100. 2019-04-17 06:15:36 +02:00
freedesktop.scm gnu: libqmi: Update to 1.22.4. 2019-04-16 21:19:33 +02:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
fvwm.scm
game-development.scm gnu: bennu-game-development-modules: Fix typos. 2019-04-17 03:21:08 +02:00
games.scm gnu: the-legend-of-edgar: Update to 1.31. 2019-04-17 03:23:37 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genimage.scm
geo.scm gnu: tippecanoe: Don't use unstable tarball. 2019-04-11 05:42:38 +02:00
gettext.scm
ghostscript.scm gnu: lcms: Fix CVE-2018-16435. 2019-04-07 21:10:26 +03:00
gimp.scm gnu: gimp: Fix typo in description. 2019-04-11 05:32:49 +02:00
gkrellm.scm
gl.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
glib.scm
gnome.scm gnu: epiphany: Don't use NAME in source URI. 2019-04-16 22:40:04 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm packages: Define 'this-package' and 'this-origin'. 2019-03-30 11:08:39 +01:00
gnunet.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
gnupg.scm gnu: gpgme: Update to 1.13.0. 2019-04-19 01:48:07 +02:00
gnustep.scm
gnuzilla.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
gobby.scm
golang.scm gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes]. 2019-04-02 13:07:03 -04:00
gperf.scm
gpodder.scm gnu: gpodder: Build reproducibly. 2019-03-31 23:32:47 +02:00
gprolog.scm
gps.scm
graph.scm gnu: Add python-louvain. 2019-04-02 15:11:45 +02:00
graphics.scm gnu: Add openscenegraph-3.4. 2019-04-14 14:45:47 +02:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat. 2019-03-30 02:34:24 -04:00
guile-wm.scm
guile-xyz.scm gnu: guile-email: Update to 0.1.0. 2019-04-09 14:02:52 +05:30
guile.scm gnu: guile: Remove version 2.0.13. 2019-03-30 15:19:32 +01:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm gnu: ddcutil: Update to 0.9.5. 2019-03-24 17:21:55 +01:00
haskell-apps.scm gnu: Mov ghc-sdl2 & co. to haskell-apps.scm. 2019-04-04 17:47:02 +02:00
haskell-check.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
haskell-crypto.scm gnu: ghc-tls: Move to haskell-crypto.scm. 2019-04-04 17:47:01 +02:00
haskell-web.scm gnu: ghc-tls: Move to haskell-crypto.scm. 2019-04-04 17:47:01 +02:00
haskell.scm gnu: Add ghc-libffi. 2019-04-11 19:34:00 -05:00
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm
ibus.scm
icu4c.scm
idris.scm gnu: idris: Run tests. 2019-04-11 19:34:01 -05:00
idutils.scm
image-processing.scm
image-viewers.scm
image.scm gnu: openjpeg: Replace with 2.3.1 [security fixes]. 2019-04-07 23:56:47 +02:00
imagemagick.scm gnu: graphicsmagick: Update to 1.3.31. 2019-03-22 13:06:59 +01:00
inklingreader.scm
inkscape.scm
ipfs.scm
irc.scm
iso-codes.scm
java-compression.scm
java-maths.scm
java.scm gnu: java-cglib: Don't use unstable tarball. 2019-04-11 05:42:38 +02:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia.scm
kde-frameworks.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
kde-plasma.scm
kde.scm gnu: Add kdeconnect. 2019-04-04 08:45:30 +03:00
kerberos.scm
key-mon.scm
kodi.scm gnu: kodi: Allow connecting to HTTPS sources. 2019-04-10 17:09:47 +02:00
language.scm gnu: perl-lingua-en-tagger: Update to 0.30. 2019-03-23 00:11:09 +01:00
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm gnu: perl-software-license: Update to 0.103014. 2019-03-23 00:11:10 +01:00
lighting.scm
linux.scm gnu: bridge-utils: Update to 1.6. 2019-04-16 19:43:42 +02:00
lirc.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
lisp.scm gnu: Add sbcl-log4cl, cl-log4cl, and ecl-log4cl. 2019-04-16 19:21:39 +02:00
llvm.scm gnu: Add libomp. 2019-04-16 17:30:22 +02:00
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add tensorflow. 2019-04-11 17:54:57 +02:00
magic-wormhole.scm
mail.scm gnu: dovecot-trees: Fix typo. 2019-04-10 19:27:30 -04:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm gnu: mate: Include mate-power-manager. 2019-04-15 23:04:55 +02:00
maths.scm gnu: hypre: Update to 2.15.1. 2019-04-15 05:11:31 +02:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: toxic: Update to 0.8.3. 2019-04-15 11:00:14 +02:00
microcom.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
mingw.scm
moe.scm
monitoring.scm gnu: fswatch: Update to 1.14.0. 2019-04-15 11:00:15 +02:00
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: eyed3: Update to 0.8.10. 2019-04-15 11:00:14 +02:00
mpd.scm gnu: ncmpc: Update to 0.34. 2019-04-15 11:00:14 +02:00
mpi.scm gnu: openmpi: Update to . 2019-04-16 00:05:04 +02:00
mtools.scm
multiprecision.scm gnu: Add libtommath-1.0. 2019-03-23 22:26:40 +02:00
music.scm gnu: klick: Fix build with latest scons. 2019-04-19 14:24:04 +02:00
musl.scm gnu: musl: Update to 1.1.22. 2019-04-15 11:00:14 +02:00
nano.scm gnu: nano: Update to 4.1. 2019-04-18 16:59:28 +03:00
ncdu.scm
ncurses.scm gnu: Use 'this-package' as a native input instead of 'self-native-input?'. 2019-03-30 15:19:32 +01:00
netpbm.scm
nettle.scm
networking.scm gnu: wireshark: Update to 3.0.1. 2019-04-16 00:05:05 +02:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
nss.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: emacs-tuareg: Don't use unstable tarball. 2019-04-15 05:11:31 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
openldap.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update to b8b1e4d. 2019-04-17 11:53:54 +02:00
parallel.scm gnu: slurm: Configure with a "standard" syslogdir. 2019-04-16 17:30:22 +02:00
password-utils.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
patchutils.scm gnu: quilt: Update to 0.66. 2019-04-15 11:00:13 +02:00
pciutils.scm
pcre.scm
pdf.scm
pem.scm
perl-check.scm gnu: Add perl-test-version. 2019-04-14 10:45:59 +01:00
perl-compression.scm
perl-web.scm gnu: Add perl-uri-db. 2019-04-14 10:45:58 +01:00
perl.scm gnu: perl-datetime-timezone: Fix missing timezone data. 2019-04-19 11:42:30 +01:00
perl6.scm gnu: perl6-meta6: Remove unsupported syntax from description. 2019-03-24 23:55:03 +01:00
phabricator.scm
photo.scm gnu: darktable: Update to 2.6.2. 2019-04-15 11:00:13 +02:00
php.scm gnu: php: Update to 7.3.4. 2019-04-04 21:39:01 +02:00
pkg-config.scm
plotutils.scm gnu: guile-charting: Install .go files in the right place. 2019-04-16 17:30:21 +02:00
poedit.scm gnu: Add poedit. 2019-04-16 22:32:27 +02:00
polkit.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
popt.scm
pretty-print.scm gnu: highlight: Update to 3.50. 2019-04-15 11:00:13 +02:00
printers.scm gnu: Add brlaser. 2019-04-02 22:04:08 +02:00
profiling.scm
protobuf.scm gnu: Add python-protobuf-next. 2019-04-08 14:41:43 +02:00
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
pv.scm
python-check.scm
python-compression.scm
python-crypto.scm gnu: python-service-identity: Update to 18.1.0. 2019-04-19 01:48:07 +02:00
python-web.scm gnu: python-hyperlink: Update to 19.0.0. 2019-04-19 01:48:06 +02:00
python-xyz.scm gnu: python2-send2trash: Don't inherit properties from python-send2trash. 2019-04-19 02:29:43 +02:00
python.scm
qt.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
ragel.scm
rails.scm gnu: Add ruby-autoprefixer-rails. 2019-03-23 09:56:37 +00:00
ratpoison.scm gnu: ratpoison: Provide a .desktop file with an absolute file name. 2019-03-28 23:06:59 +01:00
rdesktop.scm
rdf.scm gnu: Add lucene++. 2019-04-16 22:31:28 +02:00
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2019-04-01. 2019-04-04 14:31:44 +02:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-sass-spec: Don't use unstable tarball. 2019-04-10 20:54:02 +02:00
rush.scm
rust.scm gnu: rust: Update to 1.34.0. 2019-04-14 21:57:47 +02:00
sagemath.scm
samba.scm gnu: cifs-utils: Update to 6.9. 2019-04-11 05:26:45 +02:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm gnu: reptyr: Enable support for aarch64-linux. 2019-03-28 21:42:00 +02:00
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: Mov ghc-sdl2 & co. to haskell-apps.scm. 2019-04-04 17:47:02 +02:00
search.scm gnu: Add perl-search-xapian. 2019-04-10 19:00:18 +08:00
security-token.scm gnu: yubikey-personalization: Update to 1.19.3. 2019-04-15 06:45:07 +02:00
selinux.scm
serialization.scm gnu: Add jsoncpp-for-tensorflow. 2019-04-08 14:41:56 +02:00
serveez.scm
shells.scm
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
spice.scm gnu: spice-gtk: Update to 0.36. 2019-04-16 21:19:34 +02:00
sqlite.scm
ssh.scm gnu: libssh2@1.8.0: Move to ssh.scm. 2019-04-07 18:04:34 +02:00
sssd.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
stalonetray.scm
statistics.scm gnu: r-caret: Update to 6.0-83. 2019-04-19 14:42:51 +02:00
stb.scm
storage.scm gnu: Move nss & co. to nss.scm. 2019-04-04 17:47:02 +02:00
suckless.scm gnu: noice: Update to 0.8. 2019-04-11 05:26:44 +02:00
swig.scm
sync.scm gnu: rclone: Update to 1.47.0. 2019-04-17 16:25:57 +02:00
syncthing.scm gnu: Syncthing: Update to 1.1.1. 2019-04-02 13:07:03 -04:00
syndication.scm
synergy.scm
task-management.scm
tbb.scm gnu: tbb: Update to 2019_U5. 2019-03-21 19:23:48 +01:00
tcl.scm
telephony.scm gnu: Add jami-client-gnome. 2019-03-26 19:17:01 +01:00
terminals.scm gnu: kmscon: Provide source file name. 2019-04-15 12:24:14 +02:00
terraform.scm
tex.scm gnu: texlive-generic-listofitems: Fix typo in synopsis. 2019-04-11 05:32:49 +02:00
texinfo.scm
text-editors.scm
textutils.scm
time.scm
tls.scm gnu: python-acme, certbot: Update to 0.33.1. 2019-04-15 06:43:35 +02:00
tmux.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.1.20190408. 2019-04-09 19:51:41 +02:00
uucp.scm
valgrind.scm
version-control.scm gnu: libgit2: Don't use unstable tarball. 2019-04-14 20:15:29 +02:00
video.scm gnu: youtube-dl: Update to 2019.04.07. 2019-04-11 05:26:45 +02:00
vim.scm gnu: neovim: Depend on Lua 5.1, not 5.2. 2019-04-11 13:46:40 +02:00
virtualization.scm
vpn.scm gnu: wireguard: Update to 0.0.20190406. 2019-04-08 08:49:09 +02:00
vulkan.scm
w3m.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
wdiff.scm
web-browsers.scm gnu: links: Update to 2.19. 2019-04-11 05:32:48 +02:00
web.scm gnu: http-parser: Update to 2.9.2. 2019-04-16 21:19:34 +02:00
webkit.scm gnu: webkitgtk: Fix build on i686. 2019-04-16 23:39:49 +02:00
wget.scm
wicd.scm
wine.scm gnu: wine-staging: Update to 4.6. 2019-04-14 09:34:43 +02:00
wm.scm gnu: awesome: Update home page. 2019-04-17 11:53:53 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: libwacom: Update to 0.33. 2019-04-15 06:29:29 +02:00
xfce.scm gnu: Add xfce4-whiskermenu-plugin. 2019-03-24 23:06:12 +01:00
xfig.scm
xiph.scm gnu: flac: Fix CVE-2017-6888. 2019-04-05 09:50:07 +03:00
xml.scm gnu: xmlsec: Update to 1.2.28. 2019-04-19 01:48:06 +02:00
xnee.scm
xorg.scm gnu: xpra: Update to 2.5.1. 2019-04-18 09:25:38 +02:00
zile.scm