3905 lines
139 KiB
Scheme
3905 lines
139 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
||
;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
|
||
;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
|
||
;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr>
|
||
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
|
||
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
|
||
;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch>
|
||
;;; Copyright © 2015 Omar Radwan <toxemicsquire4@gmail.com>
|
||
;;; Copyright © 2015 Pierre-Antoine Rault <par@rigelk.eu>
|
||
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
|
||
;;;
|
||
;;; This file is part of GNU Guix.
|
||
;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||
;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||
|
||
(define-module (gnu packages python)
|
||
#:use-module ((guix licenses)
|
||
#:select (asl2.0 bsd-4 bsd-3 bsd-2 non-copyleft cc0 x11 x11-style
|
||
gpl2 gpl2+ gpl3+ lgpl2.0+ lgpl2.1 lgpl2.1+ lgpl3+
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||
psfl public-domain x11-style))
|
||
#:use-module ((guix licenses) #:select (expat zlib) #:prefix license:)
|
||
#:use-module (gnu packages)
|
||
#:use-module (gnu packages compression)
|
||
#:use-module (gnu packages databases)
|
||
#:use-module (gnu packages fontutils)
|
||
#:use-module (gnu packages gdbm)
|
||
#:use-module (gnu packages gcc)
|
||
#:use-module (gnu packages ghostscript)
|
||
#:use-module (gnu packages glib)
|
||
#:use-module (gnu packages gtk)
|
||
#:use-module (gnu packages icu4c)
|
||
#:use-module (gnu packages image)
|
||
#:use-module (gnu packages imagemagick)
|
||
#:use-module (gnu packages libffi)
|
||
#:use-module (gnu packages maths)
|
||
#:use-module (gnu packages multiprecision)
|
||
#:use-module (gnu packages networking)
|
||
#:use-module (gnu packages ncurses)
|
||
#:use-module (gnu packages openssl)
|
||
#:use-module (gnu packages perl)
|
||
#:use-module (gnu packages pkg-config)
|
||
#:use-module (gnu packages readline)
|
||
#:use-module (gnu packages texlive)
|
||
#:use-module (gnu packages texinfo)
|
||
#:use-module (gnu packages web)
|
||
#:use-module (gnu packages base)
|
||
#:use-module (gnu packages xml)
|
||
#:use-module (gnu packages xorg)
|
||
#:use-module (gnu packages zip)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix download)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix utils)
|
||
#:use-module (guix build-system gnu)
|
||
#:use-module (guix build-system python)
|
||
#:use-module (guix build-system trivial)
|
||
#:use-module (srfi srfi-1))
|
||
|
||
(define-public python-2
|
||
(package
|
||
(name "python")
|
||
(version "2.7.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.python.org/ftp/python/"
|
||
version "/Python-" version ".tar.xz"))
|
||
(patches (list (search-patch "python-libffi-mips-n32-fix.patch")
|
||
(search-patch "python2-sqlite-3.8.4-test-fix.patch")))
|
||
(patch-flags '("-p0"))
|
||
(sha256
|
||
(base32
|
||
"18gnpyh071dxa0rv3silrz92jw9qpblswzwv4gzqcwxzz20qxmhz"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
`(#:tests? #f
|
||
;; 258 tests OK.
|
||
;; 103 tests failed:
|
||
;; test_bz2 test_distutils test_file test_file2k test_popen2
|
||
;; test_shutil test_signal test_site test_slice test_smtplib
|
||
;; test_smtpnet test_socket test_socketserver test_softspace
|
||
;; test_sort test_sqlite test_ssl test_startfile test_str
|
||
;; test_strftime test_string test_stringprep test_strop test_strptime
|
||
;; test_strtod test_struct test_structmembers test_structseq
|
||
;; test_subprocess test_sunaudiodev test_sundry test_symtable
|
||
;; test_syntax test_sys test_sys_setprofile test_sys_settrace
|
||
;; test_sysconfig test_tarfile test_tcl test_telnetlib test_tempfile
|
||
;; test_textwrap test_thread test_threaded_import
|
||
;; test_threadedtempfile test_threading test_threading_local
|
||
;; test_threadsignals test_time test_timeout test_tk test_tokenize
|
||
;; test_tools test_trace test_traceback test_transformer
|
||
;; test_ttk_guionly test_ttk_textonly test_tuple test_typechecks
|
||
;; test_ucn test_unary test_undocumented_details test_unicode
|
||
;; test_unicode_file test_unicodedata test_univnewlines
|
||
;; test_univnewlines2k test_unpack test_urllib test_urllib2
|
||
;; test_urllib2_localnet test_urllib2net test_urllibnet test_urlparse
|
||
;; test_userdict test_userlist test_userstring test_uu test_uuid
|
||
;; test_wait3 test_wait4 test_warnings test_wave test_weakref
|
||
;; test_weakset test_whichdb test_winreg test_winsound test_with
|
||
;; test_wsgiref test_xdrlib test_xml_etree test_xml_etree_c
|
||
;; test_xmllib test_xmlrpc test_xpickle test_xrange test_zipfile
|
||
;; test_zipfile64 test_zipimport test_zipimport_support test_zlib
|
||
;; 31 tests skipped:
|
||
;; test_aepack test_al test_applesingle test_ascii_formatd test_bsddb
|
||
;; test_bsddb185 test_bsddb3 test_cd test_cl test_codecmaps_cn
|
||
;; test_codecmaps_hk test_codecmaps_jp test_codecmaps_kr
|
||
;; test_codecmaps_tw test_ctypes test_curses test_dl test_gdb test_gl
|
||
;; test_imageop test_imgfile test_ioctl test_kqueue
|
||
;; test_linuxaudiodev test_macos test_macostools test_msilib
|
||
;; test_multiprocessing test_ossaudiodev test_pep277
|
||
;; test_scriptpackages
|
||
;; 7 skips unexpected on linux2:
|
||
;; test_ascii_formatd test_bsddb test_bsddb3 test_ctypes test_gdb
|
||
;; test_ioctl test_multiprocessing
|
||
;; One of the typical errors:
|
||
;; test_unicode
|
||
;; test test_unicode crashed -- <type 'exceptions.OSError'>: [Errno 2] No such file or directory
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||
#:test-target "test"
|
||
#:configure-flags
|
||
(let ((bz2 (assoc-ref %build-inputs "bzip2"))
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||
(gdbm (assoc-ref %build-inputs "gdbm"))
|
||
(libffi (assoc-ref %build-inputs "libffi"))
|
||
(sqlite (assoc-ref %build-inputs "sqlite"))
|
||
(openssl (assoc-ref %build-inputs "openssl"))
|
||
(readline (assoc-ref %build-inputs "readline"))
|
||
(zlib (assoc-ref %build-inputs "zlib"))
|
||
(out (assoc-ref %outputs "out")))
|
||
(list "--enable-shared" ; allow embedding
|
||
"--with-system-ffi" ; build ctypes
|
||
(string-append "CPPFLAGS="
|
||
"-I" bz2 "/include "
|
||
"-I" gdbm "/include "
|
||
"-I" sqlite "/include "
|
||
"-I" openssl "/include "
|
||
"-I" readline "/include "
|
||
"-I" zlib "/include")
|
||
(string-append "LDFLAGS="
|
||
"-L" bz2 "/lib "
|
||
"-L" gdbm "/lib "
|
||
"-L" libffi "/lib "
|
||
"-L" sqlite "/lib "
|
||
"-L" openssl "/lib "
|
||
"-L" readline "/lib "
|
||
"-L" zlib "/lib "
|
||
"-Wl,-rpath=" out "/lib")))
|
||
|
||
#:phases
|
||
(alist-cons-before
|
||
'configure 'patch-lib-shells
|
||
(lambda _
|
||
;; Filter for existing files, since some may not exist in all
|
||
;; versions of python that are built with this recipe.
|
||
(substitute* (filter file-exists?
|
||
'("Lib/subprocess.py"
|
||
"Lib/popen2.py"
|
||
"Lib/distutils/tests/test_spawn.py"
|
||
"Lib/test/test_subprocess.py"))
|
||
(("/bin/sh") (which "sh"))))
|
||
(alist-cons-before
|
||
'check 'pre-check
|
||
(lambda _
|
||
;; 'Lib/test/test_site.py' needs a valid $HOME
|
||
(setenv "HOME" (getcwd)))
|
||
%standard-phases))))
|
||
(inputs
|
||
`(("bzip2" ,bzip2)
|
||
("gdbm" ,gdbm)
|
||
("libffi" ,libffi) ; for ctypes
|
||
("sqlite" ,sqlite) ; for sqlite extension
|
||
("openssl" ,openssl)
|
||
("readline" ,readline)
|
||
("zlib" ,zlib)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)))
|
||
(native-search-paths
|
||
(list (search-path-specification
|
||
(variable "PYTHONPATH")
|
||
(files '("lib/python2.7/site-packages")))))
|
||
(home-page "http://python.org")
|
||
(synopsis
|
||
"High-level, dynamically-typed programming language")
|
||
(description
|
||
"Python is a remarkably powerful dynamic programming language that
|
||
is used in a wide variety of application domains. Some of its key
|
||
distinguishing features include: clear, readable syntax; strong
|
||
introspection capabilities; intuitive object orientation; natural
|
||
expression of procedural code; full modularity, supporting hierarchical
|
||
packages; exception-based error handling; and very high level dynamic
|
||
data types.")
|
||
(license psfl)))
|
||
|
||
(define-public python
|
||
(package (inherit python-2)
|
||
(version "3.4.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://www.python.org/ftp/python/"
|
||
version "/Python-" version ".tar.xz"))
|
||
(patches (list (search-patch "python-fix-tests.patch")
|
||
;; XXX Try removing this patch for python > 3.4.3
|
||
(search-patch "python-disable-ssl-test.patch")))
|
||
(patch-flags '("-p0"))
|
||
(sha256
|
||
(base32
|
||
"1f4nm4z08sy0kqwisvv95l02crv6dyysdmx44p1mz3bn6csrdcxm"))))
|
||
(arguments (substitute-keyword-arguments (package-arguments python-2)
|
||
((#:tests? _) #t)))
|
||
(native-search-paths
|
||
(list (search-path-specification
|
||
(variable "PYTHONPATH")
|
||
(files (list (string-append "lib/python"
|
||
(version-major+minor version)
|
||
"/site-packages"))))))))
|
||
|
||
(define-public python-wrapper
|
||
(package (inherit python)
|
||
(name "python-wrapper")
|
||
(source #f)
|
||
(build-system trivial-build-system)
|
||
(propagated-inputs `(("python" ,python)))
|
||
(arguments
|
||
`(#:modules ((guix build utils))
|
||
#:builder
|
||
(begin
|
||
(use-modules (guix build utils))
|
||
(let ((bin (string-append (assoc-ref %outputs "out") "/bin"))
|
||
(python (string-append (assoc-ref %build-inputs "python") "/bin/")))
|
||
(mkdir-p bin)
|
||
(for-each
|
||
(lambda (old new)
|
||
(symlink (string-append python old)
|
||
(string-append bin "/" new)))
|
||
`("python3", "pydoc3", "idle3")
|
||
`("python", "pydoc", "idle"))))))
|
||
(description (string-append (package-description python)
|
||
"\n\nThis wrapper package provides symbolic links to the python binaries
|
||
without version suffix."))))
|
||
|
||
|
||
(define-public python-pytz
|
||
(package
|
||
(name "python-pytz")
|
||
(version "2013b")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://launchpad.net/pytz/main/" version
|
||
"/+download/pytz-" version ".tar.bz2"))
|
||
(sha256
|
||
(base32
|
||
"19giwgfcrg0nr1gdv49qnmf2jb2ilkcfc7qyqvfpz4dp0p64ksv5"))))
|
||
(build-system python-build-system)
|
||
(arguments `(#:tests? #f)) ; no test target
|
||
(home-page "https://launchpad.net/pytz")
|
||
(synopsis "Python timezone library")
|
||
(description
|
||
"This library allows accurate and cross platform timezone calculations
|
||
using Python 2.4 or higher and provides access to the Olson timezone database.")
|
||
(license x11)))
|
||
|
||
(define-public python2-pytz
|
||
(package-with-python2 python-pytz))
|
||
|
||
|
||
(define-public python-babel
|
||
(package
|
||
(name "python-babel")
|
||
(version "1.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/B/Babel/Babel-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0bnin777lc53nxd1hp3apq410jj5wx92n08h7h4izpl4f4sx00lz"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-pytz" ,python-pytz)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ; no test target
|
||
(home-page "http://babel.pocoo.org/")
|
||
(synopsis
|
||
"Tools for internationalizing Python applications")
|
||
(description
|
||
"Babel is composed of two major parts:
|
||
- tools to build and work with gettext message catalogs
|
||
- a Python interface to the CLDR (Common Locale Data Repository), providing
|
||
access to various locale display names, localized number and date formatting,
|
||
etc. ")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-babel
|
||
(package-with-python2 python-babel))
|
||
|
||
(define-public python2-backport-ssl-match-hostname
|
||
(package
|
||
(name "python2-backport-ssl-match-hostname")
|
||
(version "3.4.0.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/b/"
|
||
"backports.ssl_match_hostname/backports.ssl_match_hostname-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1bnn47ipvhy49n0m50v27lp4xj6sqdkdw676ypd7pawsn1zhwh87"))))
|
||
(build-system python-build-system)
|
||
(arguments `(#:python ,python-2))
|
||
(inputs
|
||
`(("python2-setuptools" ,python2-setuptools)))
|
||
(home-page "https://pypi.python.org/pypi/backports.ssl_match_hostname")
|
||
(synopsis "Backport of ssl.match_hostname() function from Python 3.4")
|
||
(description
|
||
"This backport brings the ssl.match_hostname() function to users of
|
||
earlier versions of Python. The function checks the hostname in the
|
||
certificate returned by the server to which a connection has been established,
|
||
and verifies that it matches the intended target hostname.")
|
||
(license psfl)))
|
||
|
||
(define-public python-h5py
|
||
(package
|
||
(name "python-h5py")
|
||
(version "2.4.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/h/h5py/h5py-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0q4f9l8grf6pwp64xbv8bmyxx416s7h4522nnxac056ap3savbps"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-cython" ,python-cython)
|
||
("python-numpy" ,python-numpy)
|
||
("hdf5" ,hdf5)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ; no test target
|
||
(home-page "http://www.h5py.org/")
|
||
(synopsis "Read and write HDF5 files from Python")
|
||
(description
|
||
"The h5py package provides both a high- and low-level interface to the
|
||
HDF5 library from Python. The low-level interface is intended to be a
|
||
complete wrapping of the HDF5 API, while the high-level component supports
|
||
access to HDF5 files, datasets and groups using established Python and NumPy
|
||
concepts.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-h5py
|
||
(let ((h5py (package-with-python2 python-h5py)))
|
||
(package (inherit h5py)
|
||
(inputs
|
||
`(("python2-numpy" ,python2-numpy)
|
||
,@(alist-delete
|
||
"python-numpy"
|
||
(package-inputs h5py)))))))
|
||
|
||
(define-public python-lockfile
|
||
(package
|
||
(name "python-lockfile")
|
||
(version "0.9.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/l/lockfile/"
|
||
"lockfile-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0iwif7i84gwpvrnpv4brshdk8j6l77smvknm8k3bg77mj6f5ini3"))))
|
||
(build-system python-build-system)
|
||
(arguments '(#:test-target "check"))
|
||
(home-page "http://code.google.com/p/pylockfile/")
|
||
(synopsis "Platform-independent file locking module")
|
||
(description
|
||
"The lockfile package exports a LockFile class which provides a simple
|
||
API for locking files.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-lockfile
|
||
(package-with-python2 python-lockfile))
|
||
|
||
(define-public python-mock
|
||
(package
|
||
(name "python-mock")
|
||
(version "1.0.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/m/mock/"
|
||
"mock-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0kzlsbki6q0awf89rc287f3aj8x431lrajf160a70z0ikhnxsfdq"))))
|
||
(build-system python-build-system)
|
||
(arguments '(#:test-target "check"))
|
||
(home-page "http://code.google.com/p/mock/")
|
||
(synopsis "Python mocking and patching library for testing")
|
||
(description
|
||
"Mock is a library for testing in Python. It allows you to replace parts
|
||
of your system under test with mock objects and make assertions about how they
|
||
have been used.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-mock
|
||
(package-with-python2 python-mock))
|
||
|
||
|
||
(define-public python-setuptools
|
||
(package
|
||
(name "python-setuptools")
|
||
(version "12.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/s/setuptools/setuptools-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"04bfk7si1pwj3b5k2b1x9b1zkiclybmzpw6alrs5bciri56lg9zs"))))
|
||
(build-system python-build-system)
|
||
;; FIXME: Tests require pytest, which itself relies on setuptools.
|
||
;; One could bootstrap with an internal untested setuptools.
|
||
(arguments
|
||
`(#:tests? #f))
|
||
(home-page "https://pypi.python.org/pypi/setuptools")
|
||
(synopsis
|
||
"Library designed to facilitate packaging Python projects")
|
||
(description
|
||
"Setuptools is a fully-featured, stable library designed to facilitate
|
||
packaging Python projects, where packaging includes:
|
||
Python package and module definitions,
|
||
distribution package metadata,
|
||
test hooks,
|
||
project installation,
|
||
platform-specific details,
|
||
Python 3 support.")
|
||
(license psfl)))
|
||
|
||
(define-public python2-setuptools
|
||
(package-with-python2 python-setuptools))
|
||
|
||
|
||
(define-public python-pycrypto
|
||
(package
|
||
(name "python-pycrypto")
|
||
(version "2.6.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"pycrypto/pycrypto-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0g0ayql5b9mkjam8hym6zyg6bv77lbh66rv1fyvgqb17kfc1xkpj"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(inputs
|
||
`(("python" ,python)
|
||
("gmp" ,gmp)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'build 'set-build-env
|
||
;; pycrypto runs an autoconf configure script behind the scenes
|
||
(lambda _
|
||
(setenv "CONFIG_SHELL" (which "bash")))
|
||
%standard-phases)))
|
||
(home-page "http://www.pycrypto.org/")
|
||
(synopsis "Cryptographic modules for Python")
|
||
(description
|
||
"Pycrypto is a collection of both secure hash functions (such as SHA256
|
||
and RIPEMD160), and various encryption algorithms (AES, DES, RSA, ElGamal,
|
||
etc.). The package is structured to make adding new modules easy.")
|
||
(license public-domain)))
|
||
|
||
(define-public python-keyring
|
||
(package
|
||
(name "python-keyring")
|
||
(version "3.8")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/k/"
|
||
"keyring/keyring-" version ".zip"))
|
||
(sha256
|
||
(base32
|
||
"1vxazfbcwggyfyramh55shkxs08skhpqrkm6lrrjnygnm8c1l2zg"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("unzip" ,unzip)
|
||
("python-setuptools" ,python-setuptools)
|
||
("python-mock" ,python-mock)))
|
||
(inputs
|
||
`(("python-pycrypto" ,python-pycrypto)))
|
||
(arguments
|
||
`(#:tests? #f ;TODO: tests require pytest
|
||
#:phases
|
||
(alist-replace
|
||
'unpack
|
||
(lambda _
|
||
(let ((unzip (string-append (assoc-ref %build-inputs "unzip")
|
||
"/bin/unzip"))
|
||
(source (assoc-ref %build-inputs "source")))
|
||
(and (zero? (system* unzip source))
|
||
(chdir (string-append "keyring-" ,version)))))
|
||
%standard-phases)))
|
||
(home-page "http://bitbucket.org/kang/python-keyring-lib")
|
||
(synopsis "Store and access your passwords safely")
|
||
(description
|
||
"The Python keyring lib provides a easy way to access the system keyring
|
||
service from python. It can be used in any application that needs safe
|
||
password storage.")
|
||
;; "MIT" and PSF dual license
|
||
(license x11)))
|
||
|
||
(define-public python-six
|
||
(package
|
||
(name "python-six")
|
||
(version "1.7.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/s/"
|
||
"six/six-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"164rns26aqfqx2hwi0qq3scl50s69japn0fvgvrjsbyg7r1mxf67"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pypi.python.org/pypi/six/")
|
||
(synopsis "Python 2 and 3 compatibility utilities")
|
||
(description
|
||
"Six is a Python 2 and 3 compatibility library. It provides utility
|
||
functions for smoothing over the differences between the Python versions with
|
||
the goal of writing Python code that is compatible on both Python versions.
|
||
Six supports every Python version since 2.5. It is contained in only one
|
||
Python file, so it can be easily copied into your project.")
|
||
(license x11)))
|
||
|
||
(define-public python2-six
|
||
(package-with-python2 python-six))
|
||
|
||
(define-public python-dateutil-2
|
||
(package
|
||
(name "python-dateutil")
|
||
(version "2.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
name "/" name "-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0s74ad6r789810s10dxgvaf48ni6adac2icrdad34zxygqq6bj7f"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-six" ,python-six)))
|
||
(home-page "http://labix.org/python-dateutil")
|
||
(synopsis "Extensions to the standard datetime module")
|
||
(description
|
||
"The dateutil module provides powerful extensions to the standard
|
||
datetime module, available in Python 2.3+.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-dateutil-2
|
||
(package-with-python2 python-dateutil-2))
|
||
|
||
(define-public python-dateutil
|
||
(package
|
||
(name "python-dateutil")
|
||
(version "1.5") ; last version for python < 3
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "http://labix.org/download/python-dateutil/"
|
||
"python-dateutil-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0fqfglhy5khbvsipr3x7m6bcaqljh8xl5cw33vbfxy7qhmywm2n0"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://labix.org/python-dateutil")
|
||
(synopsis "Extensions to the standard datetime module")
|
||
(description
|
||
"The dateutil module provides powerful extensions to the standard
|
||
datetime module, available in Python 2.3+.")
|
||
(license psfl)))
|
||
|
||
(define-public python2-dateutil
|
||
(package-with-python2 python-dateutil))
|
||
|
||
(define-public python-parsedatetime
|
||
(package
|
||
(name "python-parsedatetime")
|
||
(version "1.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"parsedatetime/parsedatetime-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1zcj0pzxvpl4j2ma9awmpkfxldybi2kjaahjjpmgfbg5cxwcjsqv"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ;no test target
|
||
(home-page "http://github.com/bear/parsedatetime/")
|
||
(synopsis
|
||
"Parse human-readable date/time text")
|
||
(description
|
||
"Parse human-readable date/time text")
|
||
(license asl2.0)))
|
||
|
||
(define-public python-pandas
|
||
(package
|
||
(name "python-pandas")
|
||
(version "0.16.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"pandas/pandas-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1wfrp8dx1zcsry6f09ndza6qm1yr7f163211f4l9vjlnhxpxw4s0"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(;; Three tests fail:
|
||
;; - test_read_google
|
||
;; - test_read_yahoo
|
||
;; - test_month_range_union_tz_dateutil
|
||
#:tests? #f))
|
||
(propagated-inputs
|
||
`(("python-numpy" ,python-numpy)
|
||
("python-pytz" ,python-pytz)
|
||
("python-dateutil" ,python-dateutil-2)))
|
||
(native-inputs
|
||
`(("python-nose" ,python-nose)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pandas.pydata.org")
|
||
(synopsis "Data structures for data analysis, time series, and statistics")
|
||
(description
|
||
"Pandas is a Python package providing fast, flexible, and expressive data
|
||
structures designed to make working with structured (tabular,
|
||
multidimensional, potentially heterogeneous) and time series data both easy
|
||
and intuitive. It aims to be the fundamental high-level building block for
|
||
doing practical, real world data analysis in Python.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-pandas
|
||
(package-with-python2 python-pandas))
|
||
|
||
(define-public python-tzlocal
|
||
(package
|
||
(name "python-tzlocal")
|
||
(version "1.1.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/t/"
|
||
"tzlocal/tzlocal-" version ".zip"))
|
||
(sha256
|
||
(base32
|
||
"1m3y918c3chf41fwg2bx4w42bqsjzn3dyvvcmwwy13c8gj6zssv9"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("unzip" ,unzip)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(inputs `(("python-pytz" ,python-pytz)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-replace
|
||
'unpack
|
||
(lambda _
|
||
(let ((unzip (string-append (assoc-ref %build-inputs "unzip")
|
||
"/bin/unzip"))
|
||
(source (assoc-ref %build-inputs "source")))
|
||
(and (zero? (system* unzip source))
|
||
(chdir (string-append "tzlocal-" ,version)))))
|
||
%standard-phases)))
|
||
(home-page "https://github.com/regebro/tzlocal")
|
||
(synopsis
|
||
"Local timezone information for Python")
|
||
(description
|
||
"Tzlocal returns a tzinfo object with the local timezone information.
|
||
This module attempts to fix a glaring hole in pytz, that there is no way to
|
||
get the local timezone information, unless you know the zoneinfo name, and
|
||
under several distributions that's hard or impossible to figure out.")
|
||
(license cc0)))
|
||
|
||
(define-public python-pysam
|
||
(package
|
||
(name "python-pysam")
|
||
(version "0.8.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:tests? #f ; tests are excluded in the manifest
|
||
#:phases
|
||
(alist-cons-before
|
||
'build 'set-flags
|
||
(lambda _
|
||
(setenv "LDFLAGS" "-lncurses")
|
||
(setenv "CFLAGS" "-D_CURSES_LIB=1"))
|
||
%standard-phases)))
|
||
(inputs
|
||
`(("python-cython" ,python-cython)
|
||
("python-setuptools" ,python-setuptools)
|
||
("ncurses" ,ncurses)
|
||
("zlib" ,zlib)))
|
||
(home-page "https://github.com/pysam-developers/pysam")
|
||
(synopsis "Python bindings to the SAMtools C API")
|
||
(description
|
||
"Pysam is a Python module for reading and manipulating files in the
|
||
SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It
|
||
also includes an interface for tabix.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pysam
|
||
(package-with-python2 python-pysam))
|
||
|
||
(define-public python2-pysqlite
|
||
(package
|
||
(name "python2-pysqlite")
|
||
(version "2.6.3a") ; see below
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
;; During the switch from code.google.com to pypi.python.org, the 2.6.3
|
||
;; tarball was modified, but the version number was kept:
|
||
;; <https://lists.gnu.org/archive/html/guix-devel/2014-02/msg00077.html>.
|
||
;; Here we want to refer to the pypi-hosted 2.6.3 tarball.
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/pysqlite/pysqlite-"
|
||
"2.6.3" ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"13djzgnbi71znjjyaw4nybg6smilgszcid646j5qav7mdchkb77y"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("sqlite" ,sqlite)))
|
||
(arguments
|
||
`(#:python ,python-2 ; incompatible with Python 3
|
||
#:tests? #f)) ; no test target
|
||
(home-page "https://pypi.python.org/pypi/pysqlite")
|
||
(synopsis "SQLite bindings for Python")
|
||
(description
|
||
"Pysqlite provides SQLite bindings for Python that comply to the
|
||
Database API 2.0T.")
|
||
(license license:zlib)))
|
||
|
||
|
||
(define-public python2-mechanize
|
||
(package
|
||
(name "python2-mechanize")
|
||
(version "0.2.5")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/m/mechanize/mechanize-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0rj7r166i1dyrq0ihm5rijfmvhs8a04im28lv05c0c3v206v4rrf"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python2-setuptools" ,python2-setuptools)))
|
||
(arguments
|
||
`(#:python ,python-2 ; apparently incompatible with Python 3
|
||
#:tests? #f))
|
||
;; test fails with message
|
||
;; AttributeError: 'module' object has no attribute 'test_pullparser'
|
||
;; (python-3.3.2) or
|
||
;; AttributeError: 'module' object has no attribute 'test_urllib2_localnet'
|
||
;; (python-2.7.5).
|
||
;; The source code is from March 2011 and probably not up-to-date
|
||
;; with respect to python unit tests.
|
||
(home-page "http://wwwsearch.sourceforge.net/mechanize/")
|
||
(synopsis
|
||
"Stateful programmatic web browsing in Python")
|
||
(description
|
||
"Mechanize implements stateful programmatic web browsing in Python,
|
||
after Andy Lester’s Perl module WWW::Mechanize.")
|
||
(license (non-copyleft "file://COPYING"
|
||
"See COPYING in the distribution."))))
|
||
|
||
|
||
(define-public python-simplejson
|
||
(package
|
||
(name "python-simplejson")
|
||
(version "3.3.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/s/simplejson/simplejson-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"07wsry5j44l5zzm74l4j2bvasiq8n5m32f31n2p7c68i5vc6p2ks"))))
|
||
(build-system python-build-system)
|
||
(home-page "http://simplejson.readthedocs.org/en/latest/")
|
||
(synopsis
|
||
"Json library for Python")
|
||
(description
|
||
"JSON (JavaScript Object Notation) is a subset of JavaScript syntax
|
||
(ECMA-262 3rd edition) used as a lightweight data interchange format.
|
||
|
||
Simplejson exposes an API familiar to users of the standard library marshal
|
||
and pickle modules. It is the externally maintained version of the json
|
||
library contained in Python 2.6, but maintains compatibility with Python 2.5
|
||
and (currently) has significant performance advantages, even without using
|
||
the optional C extension for speedups. Simplejson is also supported on
|
||
Python 3.3+.")
|
||
(license x11)))
|
||
|
||
(define-public python2-simplejson
|
||
(package-with-python2 python-simplejson))
|
||
|
||
|
||
(define-public python2-pyicu
|
||
(package
|
||
(name "python2-pyicu")
|
||
(version "1.8")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/P/PyICU/PyICU-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1y361x82lnh9k9srmdx3q92z5iag112z7r5fxm0n1sfwb349yjdw"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("icu4c" ,icu4c)))
|
||
(arguments
|
||
`(#:python ,python-2 ; Python 3 works also, but needs special care for
|
||
; linking with libpython3.3m
|
||
#:tests? #f)) ; no check target
|
||
(home-page "http://pyicu.osafoundation.org/")
|
||
(synopsis "Python extension wrapping the ICU C++ API")
|
||
(description
|
||
"PyICU is a python extension wrapping the ICU C++ API.")
|
||
(license x11)))
|
||
|
||
(define-public python2-dogtail
|
||
;; Python 2 only, as it leads to "TabError: inconsistent use of tabs and
|
||
;; spaces in indentation" with Python 3.
|
||
(package
|
||
(name "python2-dogtail")
|
||
(version "0.8.2")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://fedorahosted.org/released/dogtail/dogtail-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1yc4cg7ip87z15gyd4wy2vzbywrjc52a3m8r8gqy2b50d65llcg1"))))
|
||
(build-system python-build-system)
|
||
(arguments `(#:python ,python-2
|
||
#:tests? #f)) ; invalid command "test"
|
||
(home-page "https://fedorahosted.org/dogtail/")
|
||
(synopsis "GUI test tool and automation framework written in Python")
|
||
(description
|
||
"Dogtail is a GUI test tool and automation framework written in Python.
|
||
It uses Accessibility (a11y) technologies to communicate with desktop
|
||
applications. dogtail scripts are written in Python and executed like any
|
||
other Python program.")
|
||
(license gpl2+)))
|
||
|
||
(define-public python2-empy
|
||
(package
|
||
(name "python2-empy")
|
||
(version "3.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "http://www.alcyone.com/software/empy/empy-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"01g8mmkfnvjdmlhsihwyx56lrg7r5m5d2fg6mnxsvy6g0dnl69f6"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2
|
||
#:phases (alist-replace
|
||
'check
|
||
(lambda _
|
||
(zero? (system* "./test.sh")))
|
||
%standard-phases)))
|
||
(home-page "http://www.alcyone.com/software/empy/")
|
||
(synopsis "Templating system for Python")
|
||
(description
|
||
"EmPy is a system for embedding Python expressions and statements in
|
||
template text; it takes an EmPy source file, processes it, and produces
|
||
output. This is accomplished via expansions, which are special signals to the
|
||
EmPy system and are set off by a special prefix (by default the at sign, @).
|
||
EmPy can expand arbitrary Python expressions and statements in this way, as
|
||
well as a variety of special forms. Textual data not explicitly delimited in
|
||
this way is sent unaffected to the output, allowing Python to be used in
|
||
effect as a markup language. Also supported are callbacks via hooks,
|
||
recording and playback via diversions, and dynamic, chainable filters. The
|
||
system is highly configurable via command line options and embedded
|
||
commands.")
|
||
(license lgpl2.1+)))
|
||
|
||
(define-public python2-element-tree
|
||
(package
|
||
(name "python2-element-tree")
|
||
(version "1.2.6")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://effbot.org/media/downloads/elementtree-"
|
||
version "-20050316.tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"016bphqnlg0l4vslahhw4r0aanw95bpypy65r1i1acyb2wj5z7dj"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2 ; seems to be part of Python 3
|
||
#:tests? #f)) ; no 'test' sub-command
|
||
(synopsis "Toolkit for XML processing in Python")
|
||
(description
|
||
"ElementTree is a Python library supporting lightweight XML processing.")
|
||
(home-page "http://effbot.org/zone/element-index.htm")
|
||
(license (x11-style "http://docs.python.org/2/license.html"
|
||
"Like \"CWI LICENSE AGREEMENT FOR PYTHON \
|
||
0.9.0 THROUGH 1.2\"."))))
|
||
|
||
(define-public python2-pybugz
|
||
(package
|
||
(name "python2-pybugz")
|
||
(version "0.6.11")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://bits.liquidx.net/projects/pybugz/pybugz-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"17ni00p08gp5lkxlrrcnvi3x09fmajnlbz4da03qcgl9q21ym4jd"))
|
||
(patches (map search-patch
|
||
(list "pybugz-stty.patch"
|
||
"pybugz-encode-error.patch")))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2 ; SyntaxError with Python 3
|
||
#:tests? #f)) ; no 'test' sub-command
|
||
(inputs `(("element-tree" ,python2-element-tree)))
|
||
(synopsis "Python and command-line interface to Bugzilla")
|
||
(description
|
||
"PyBugz is a Python library and command-line tool to query the Bugzilla
|
||
bug tracking system. It is meant as an aid to speed up interaction with the
|
||
bug tracker.")
|
||
(home-page "http://www.liquidx.net/pybugz/")
|
||
(license gpl2)))
|
||
|
||
(define-public python-enum34
|
||
(package
|
||
(name "python-enum34")
|
||
(version "1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/e/"
|
||
"enum34/enum34-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0dg6mpg9n4g9diyrbnbb5vd9d1qw9f265zwhknqy0mxh0cvmjjrq"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-replace
|
||
'check
|
||
(lambda _ (zero? (system* "python" "enum/test_enum.py")))
|
||
%standard-phases)))
|
||
(home-page "https://pypi.python.org/pypi/enum34")
|
||
(synopsis "Backported Python 3.4 Enum")
|
||
(description
|
||
"Enum34 is the new Python stdlib enum module available in Python 3.4
|
||
backported for previous versions of Python from 2.4 to 3.3.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python-parse-type
|
||
(package
|
||
(name "python-parse-type")
|
||
(version "0.3.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"parse_type/parse_type-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0iv1c34npr4iynwpgv1vkjx9rjd18a85ir8c01gc5f7wp8iv7l1x"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-six" ,python-six)
|
||
("python-parse" ,python-parse)
|
||
("python-enum34" ,python-enum34))) ;required for python<3.4
|
||
(arguments '(#:tests? #f)) ;TODO: tests require pytest
|
||
(home-page "https://github.com/jenisys/parse_type")
|
||
(synopsis "Extended parse module")
|
||
(description
|
||
"Parse_type extends the python parse module.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python-parse
|
||
(package
|
||
(name "python-parse")
|
||
(version "1.6.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"parse/parse-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0m30q64l6szl7s9mhvqy64w2fdhdn8lb91fmacjiwbv3479cmk57"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(alist-replace
|
||
'check
|
||
(lambda _ (zero? (system* "python" "test_parse.py")))
|
||
%standard-phases)))
|
||
(home-page "https://github.com/r1chardj0n3s/parse")
|
||
(synopsis "Parse strings")
|
||
(description
|
||
"Parse strings using a specification based on the Python format()
|
||
syntax.")
|
||
(license x11)))
|
||
|
||
|
||
(define-public scons
|
||
(package
|
||
(name "scons")
|
||
(version "2.3.4")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/scons/scons-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0hdlci43wjz8maryj83mz04ir6rwcdrrzpd7cpzvdlzycqhdfmsb"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
;; With Python 3.x, fails to build with a syntax error.
|
||
`(#:python ,python-2
|
||
#:tests? #f)) ; no 'python setup.py test' command
|
||
(home-page "http://scons.org/")
|
||
(synopsis "Software construction tool written in Python")
|
||
(description
|
||
"SCons is a software construction tool. Think of SCons as an improved,
|
||
cross-platform substitute for the classic Make utility with integrated
|
||
functionality similar to autoconf/automake and compiler caches such as ccache.
|
||
In short, SCons is an easier, more reliable and faster way to build
|
||
software.")
|
||
(license x11)))
|
||
|
||
(define-public python-extras
|
||
(package
|
||
(name "python-extras")
|
||
(version "0.0.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/e/extras/extras-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1h7zx4dfyclalg0fqnfjijpn0f793a9mx8sy3b27gd31nr6dhq3s"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
;; error in setup.cfg: command 'test' has no such option 'buffer'
|
||
'(#:tests? #f))
|
||
(home-page "https://github.com/testing-cabal/extras")
|
||
(synopsis "Useful extensions to the Python standard library")
|
||
(description
|
||
"Extras is a set of extensions to the Python standard library.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-extras
|
||
(package-with-python2 python-extras))
|
||
|
||
(define-public python-mimeparse
|
||
(package
|
||
(name "python-mimeparse")
|
||
(version "0.1.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/python-mimeparse/python-mimeparse-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1hyxg09kaj02ri0rmwjqi86wk4nd1akvv7n0dx77azz76wga4s9w"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
'(#:tests? #f)) ; no setup.py test command
|
||
(home-page
|
||
"https://github.com/dbtsai/python-mimeparse")
|
||
(synopsis "Python library for parsing MIME types")
|
||
(description
|
||
"Mimeparse provides basic functions for parsing MIME type names and
|
||
matching them against a list of media-ranges.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-mimeparse
|
||
(package-with-python2 python-mimeparse))
|
||
|
||
(define-public python-nose
|
||
(package
|
||
(name "python-nose")
|
||
(version "1.3.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/n/nose/nose-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"00qymfgwg4iam4xi0w9bnv7lcb3fypq1hzfafzgs1rfmwaj67g3n"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
'(#:tests? #f)) ; FIXME: test suite fails
|
||
(home-page "http://readthedocs.org/docs/nose/")
|
||
(synopsis "Python testing library")
|
||
(description
|
||
"Nose extends the unittest library to make testing easier.")
|
||
(license lgpl2.0+)))
|
||
|
||
(define-public python2-nose
|
||
(package-with-python2 python-nose))
|
||
|
||
(define-public python-unittest2
|
||
(package
|
||
(name "python-unittest2")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/u/unittest2py3k/unittest2py3k-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"00yl6lskygcrddx5zspkhr0ibgvpknl4678kkm6s626539grq93q"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pypi.python.org/pypi/unittest2")
|
||
(synopsis "Python unit testing library")
|
||
(description
|
||
"Unittest2 is a replacement for the unittest module in the Python
|
||
standard library.")
|
||
(license psfl)))
|
||
|
||
(define-public python2-unittest2
|
||
(package (inherit python-unittest2)
|
||
(name "python2-unittest2")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/u/unittest2/unittest2-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0wbs4i4x3x7klr3v35ss6p9mcqz883i1xgcpkhvl7n2lyv6yhpda"))))
|
||
(inputs
|
||
`(("python2-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:python ,python-2
|
||
#:tests? #f)))) ; no setup.py test command
|
||
|
||
(define-public python-py
|
||
(package
|
||
(name "python-py")
|
||
(version "1.4.23")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/py/py-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1jkhffpai419v5rickm2vz86p9bkg3b3kcm2k4bi5wfajhw2m3xs"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pylib.readthedocs.org/")
|
||
(synopsis "Python library for parsing, I/O, instrospection, and logging")
|
||
(description
|
||
"Py is a Python library for file name parsing, .ini file parsing, I/O,
|
||
code introspection, and logging.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-py
|
||
(package-with-python2 python-py))
|
||
|
||
(define-public python-pytest
|
||
(package
|
||
(name "python-pytest")
|
||
(version "2.6.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/pytest/pytest-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0g2w4p0n42wvz8rq4k6gnzpkakgz3g8sfanxk8jrsra9675snkcr"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
;; One of the tests involves the /usr directory, so it fails.
|
||
'(substitute* "testing/test_argcomplete.py"
|
||
(("def test_remove_dir_prefix\\(self\\):")
|
||
"@pytest.mark.xfail\n def test_remove_dir_prefix(self):")))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-py" ,python-py)
|
||
("python-nose" ,python-nose)
|
||
("python-mock" ,python-mock)))
|
||
(home-page "http://pytest.org")
|
||
(synopsis "Python testing library")
|
||
(description
|
||
"Pytest is a testing tool that provides auto-discovery of test modules
|
||
and functions, detailed info on failing assert statements, modular fixtures,
|
||
and many external plugins.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pytest
|
||
(package-with-python2 python-pytest))
|
||
|
||
(define-public python-scripttest
|
||
(package
|
||
(name "python-scripttest")
|
||
(version "1.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/s/scripttest/scripttest-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0f4w84k8ck82syys7yg9maz93mqzc8p5ymis941x034v44jzq74m"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-pytest" ,python-pytest)))
|
||
(home-page "http://pythonpaste.org/scripttest/")
|
||
(synopsis "Python library to test command-line scripts")
|
||
(description "Scripttest is a Python helper library for testing
|
||
interactive command-line applications. With it you can run a script in a
|
||
subprocess and see the output as well as any file modifications.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-scripttest
|
||
(package-with-python2 python-scripttest))
|
||
|
||
(define-public python-testtools
|
||
(package
|
||
(name "python-testtools")
|
||
(version "1.0.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/testtools/testtools-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1dyml28ykpl5jb9khdmcdvhy1cxqingys6qvj2k04fzlaj6z3bbx"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-mimeparse" ,python-mimeparse)
|
||
("python-extras" ,python-extras)))
|
||
(home-page "https://github.com/testing-cabal/testtools")
|
||
(synopsis
|
||
"Extensions to the Python standard library unit testing framework")
|
||
(description
|
||
"Testtools extends the Python standard library unit testing framework to
|
||
provide matchers, more debugging information, and cross-Python
|
||
compatibility.")
|
||
(license psfl)))
|
||
|
||
(define-public python2-testtools
|
||
(package-with-python2 python-testtools))
|
||
|
||
(define-public python-testscenarios
|
||
(package
|
||
(name "python-testscenarios")
|
||
(version "0.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/testscenarios/testscenarios-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1671jvrvqlmbnc42j7pc5y6vc37q44aiwrq0zic652pxyy2fxvjg"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-testtools" ,python-testtools)
|
||
("python-mimeparse" ,python-mimeparse)))
|
||
(home-page "https://launchpad.net/testscenarios")
|
||
(synopsis "Pyunit extension for dependency injection")
|
||
(description
|
||
"Testscenarios provides clean dependency injection for Python unittest
|
||
style tests.")
|
||
(license (list bsd-3 asl2.0)))) ; at the user's option
|
||
|
||
(define-public python2-testscenarios
|
||
(package-with-python2 python-testscenarios))
|
||
|
||
(define-public python-testresources
|
||
(package
|
||
(name "python-testresources")
|
||
(version "0.2.7")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/testresources/testresources-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0cbj3plbllyz42c4b5xxgwaa7mml54lakslrn4kkhinxhdri22md"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://launchpad.net/testresources")
|
||
(synopsis
|
||
"Pyunit extension for managing test resources")
|
||
(description
|
||
"Testresources is an extension to Python's unittest to allow declarative
|
||
use of resources by test cases.")
|
||
(license (list bsd-3 asl2.0)))) ; at the user's option
|
||
|
||
(define-public python2-testresources
|
||
(package-with-python2 python-testresources))
|
||
|
||
(define-public python-subunit
|
||
(package
|
||
(name "python-subunit")
|
||
(version "0.0.21")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/python-subunit/python-subunit-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1nkw9wfbvizmpajbj3in8ns07g7lwkiv8hip14jjlwk3cacls6jv"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-testtools" ,python-testtools)
|
||
("python-mimeparse" ,python-mimeparse)
|
||
("python-testscenarios" ,python-testscenarios)))
|
||
(home-page "http://launchpad.net/subunit")
|
||
(synopsis "Python implementation of the subunit protocol")
|
||
(description
|
||
"Python-subunit is a Python implementation of the subunit test streaming
|
||
protocol.")
|
||
(license (list bsd-3 asl2.0)))) ; at the user's option
|
||
|
||
(define-public python2-subunit
|
||
(package-with-python2 python-subunit))
|
||
|
||
(define-public python-fixtures
|
||
(package
|
||
(name "python-fixtures")
|
||
(version "0.3.16")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/f/fixtures/fixtures-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0x9r2gwilcig5g54k60bxzg96zabizq1855lrprlb4zckalp9asc"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
'(#:tests? #f)) ; no setup.py test command
|
||
(home-page "https://launchpad.net/python-fixtures")
|
||
(synopsis "Python test fixture library")
|
||
(description
|
||
"Fixtures provides a way to create reusable state, useful when writing
|
||
Python tests.")
|
||
(license (list bsd-3 asl2.0)))) ; at user's option
|
||
|
||
(define-public python2-fixtures
|
||
(package-with-python2 python-fixtures))
|
||
|
||
(define-public python-testrepository
|
||
(package
|
||
(name "python-testrepository")
|
||
(version "0.0.20")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/testrepository/testrepository-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1ssqb07c277010i6gzzkbdd46gd9mrj0bi0i8vn560n2k2y4j93m"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-testtools" ,python-testtools)
|
||
("python-subunit" ,python-subunit)
|
||
("python-fixtures" ,python-fixtures)
|
||
("python-mimeparse" ,python-mimeparse)))
|
||
(home-page "https://launchpad.net/testrepository")
|
||
(synopsis "Database for Python test results")
|
||
(description "Testrepository provides a database of test results which can
|
||
be used as part of a developer's workflow to check things such as what tests
|
||
have failed since the last commit or what tests are currently failing.")
|
||
(license (list bsd-3 asl2.0)))) ; at user's option
|
||
|
||
(define-public python2-testrepository
|
||
(package-with-python2 python-testrepository))
|
||
|
||
(define-public python-coverage
|
||
(package
|
||
(name "python-coverage")
|
||
(version "3.7.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/c/coverage/coverage-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0knlbq79g2ww6xzsyknj9rirrgrgc983dpa2d9nkdf31mb2a3bni"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://nedbatchelder.com/code/coverage")
|
||
(synopsis "Code coverage measurement for Python")
|
||
(description
|
||
"Coverage measures code coverage, typically during test execution. It
|
||
uses the code analysis tools and tracing hooks provided in the Python standard
|
||
library to determine which lines are executable, and which have been
|
||
executed.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-coverage
|
||
(package-with-python2 python-coverage))
|
||
|
||
(define-public python-discover
|
||
(package
|
||
(name "python-discover")
|
||
(version "0.4.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/d/discover/discover-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0y8d0zwiqar51kxj8lzmkvwc3b8kazb04gk5zcb4nzg5k68zmhq5"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pypi.python.org/pypi/discover/")
|
||
(synopsis
|
||
"Python test discovery for unittest")
|
||
(description
|
||
"Discover provides test discovery for unittest, a feature that has been
|
||
backported from Python 2.7 for Python 2.4+")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-discover
|
||
(package-with-python2 python-discover))
|
||
|
||
(define-public behave
|
||
(package
|
||
(name "behave")
|
||
(version "1.2.4")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/b/"
|
||
name "/" name "-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1v2rfy8xnf0rk7cj4cgr7lam4015d458i7bg0xqs9czfv6njlm14"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-six" ,python-six)
|
||
("python-enum43" ,python-enum34)
|
||
("python-parse" ,python-parse)
|
||
("python-parse-type" ,python-parse-type)))
|
||
(arguments `(#:tests? #f)) ;TODO: tests require nose>=1.3 and
|
||
;PyHamcrest>=1.8
|
||
(home-page "http://github.com/behave/behave")
|
||
(synopsis "Python behavior-driven development")
|
||
(description
|
||
"Behave is a tool for behavior-driven development in python.
|
||
Behavior-driven development (or BDD) is an agile software development
|
||
technique that encourages collaboration between developers, QA and
|
||
non-technical or business participants in a software project. Behave uses
|
||
tests written in a natural language style, backed up by Python code.")
|
||
(license x11)))
|
||
|
||
(define-public python-exif-read
|
||
(package
|
||
(name "python-exif-read")
|
||
(version "1.4.2")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/E/ExifRead/ExifRead-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"17c627gcdmyc05hz4zk8qs4pjgw6rc68qzjzgz8gh1cmpsd7acf1"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ; no tests
|
||
(home-page "https://github.com/ianare/exif-py")
|
||
(synopsis "Python library to extract EXIF data from image files")
|
||
(description
|
||
"ExifRead is a Python library to extract EXIF data from tiff and jpeg
|
||
files.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-exif-read
|
||
(package-with-python2 python-exif-read))
|
||
|
||
(define-public python-pyld
|
||
(package
|
||
(name "python-pyld")
|
||
(version "0.6.0")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/P/PyLD/PyLD-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1l9ymj85fsvayqplinzpk0kyiq6m74ps9xd3a9fhlxfn1rldf8x8"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ; no tests
|
||
(home-page "http://github.com/digitalbazaar/pyld")
|
||
(synopsis "Python implementation of the JSON-LD specification")
|
||
(description
|
||
"PyLD is an implementation of the JSON-LD specification.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-pyld
|
||
(package-with-python2 python-pyld))
|
||
|
||
(define-public python-certifi
|
||
(package
|
||
(name "python-certifi")
|
||
(version "14.05.14")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/c/certifi/certifi-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0s8vxzfz6s4m6fvxc7z25k9j35w0rh6jkw3wwcd1az1mssncn6qy"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments `(#:tests? #f)) ; no tests
|
||
(home-page "http://python-requests.org/")
|
||
(synopsis "Python CA certificate bundle")
|
||
(description
|
||
"Certifi is a Python library that contains a CA certificate bundle, which
|
||
is used by the Requests library to verify HTTPS requests.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python2-certifi
|
||
(package-with-python2 python-certifi))
|
||
|
||
(define-public python-click
|
||
(package
|
||
(name "python-click")
|
||
(version "4.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/c/click/click-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0294x9g28w6zgswl0rsygkwi0wf6n480gf7fiiw5f9az3xhh77pl"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://click.pocoo.org")
|
||
(synopsis "Command line library for Python")
|
||
(description
|
||
"Click is a Python package for creating command line interfaces in a
|
||
composable way with as little code as necessary. Its name stands for
|
||
\"Command Line Interface Creation Kit\". It's highly configurable but comes
|
||
with sensible defaults out of the box.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-click
|
||
(package-with-python2 python-click))
|
||
|
||
(define-public python-requests
|
||
(package
|
||
(name "python-requests")
|
||
(version "2.4.0")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/r/requests/requests-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0gknlfx1wakrrm1zi8gi03x2lzj4dsns0vjw0nsmgqvkphyf01vh"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-certifi" ,python-certifi)))
|
||
(arguments `(#:tests? #f)) ; no tests
|
||
(home-page "http://python-requests.org/")
|
||
(synopsis "Python HTTP library")
|
||
(description
|
||
"Requests is a Python HTTP client library. It aims to be easier to use
|
||
than Python’s urllib2 library.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python2-requests
|
||
(package-with-python2 python-requests))
|
||
|
||
(define-public python-jsonschema
|
||
(package
|
||
(name "python-jsonschema")
|
||
(version "2.4.0")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/j/jsonschema/jsonschema-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1yik3031ziygvq66rj3mzfqdgxj29sg1bkfc46wsgi7lnbqs560j"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://github.com/Julian/jsonschema")
|
||
(synopsis "Implementation of JSON Schema for Python")
|
||
(description
|
||
"Jsonschema is an implementation of JSON Schema for Python.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-jsonschema
|
||
(package-with-python2 python-jsonschema))
|
||
|
||
(define-public python-unidecode
|
||
(package
|
||
(name "python-unidecode")
|
||
(version "0.04.16")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/U/Unidecode/Unidecode-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0yv56vc49rvippyxgxvcyz7jklc07ky38rcspax7p00sgmriiljc"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://pypi.python.org/pypi/Unidecode")
|
||
(synopsis "ASCII transliterations of Unicode text")
|
||
(description
|
||
"Unidecode provides ASCII transliterations of Unicode text. Unidecode is
|
||
useful when integrating with legacy code that doesn't support Unicode, or for
|
||
ease of entry of non-Roman names on a US keyboard, or when constructing ASCII
|
||
machine identifiers from human-readable Unicode strings that should still be
|
||
somewhat intelligeble.")
|
||
(license gpl2+)))
|
||
|
||
(define-public python2-unidecode
|
||
(package-with-python2 python-unidecode))
|
||
|
||
(define-public python-pyjwt
|
||
(package
|
||
(name "python-pyjwt")
|
||
(version "0.2.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/P/PyJWT/PyJWT-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1ahqblfy2sj3xz34wsa48cn9rp0dspzq56p54i5znmws3b8gml6g"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
'(#:tests? #f)) ; test suite doesn't work
|
||
(home-page "http://github.com/progrium/pyjwt")
|
||
(synopsis "JSON Web Token implementation in Python")
|
||
(description
|
||
"PyJWT is a JSON Web Token implementation written in Python.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pyjwt
|
||
(package-with-python2 python-pyjwt))
|
||
|
||
(define-public python-oauthlib
|
||
(package
|
||
(name "python-oauthlib")
|
||
(version "0.6.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append
|
||
"https://pypi.python.org/packages/source/o/oauthlib/oauthlib-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1yaj3j64la4arwsbhbfmpnickzh3jpg9nlpyg409v8pp24isn48a"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-pyjwt" ,python-pyjwt)
|
||
("python-pycrypto" ,python-pycrypto)
|
||
("python-nose" ,python-nose)
|
||
("python-mock" ,python-mock)))
|
||
(home-page "https://github.com/idan/oauthlib")
|
||
(synopsis "OAuth implementation for Python")
|
||
(description
|
||
"Oauthlib is a generic, spec-compliant, thorough implementation of the
|
||
OAuth request-signing logic.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-oauthlib
|
||
(let ((base (package-with-python2 python-oauthlib)))
|
||
(package
|
||
(inherit base)
|
||
(inputs
|
||
(append (package-inputs base)
|
||
`(("python2-unittest2" ,python2-unittest2)))))))
|
||
|
||
(define-public python-itsdangerous
|
||
(package
|
||
(name "python-itsdangerous")
|
||
(version "0.24")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/i/itsdangerous/itsdangerous-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"06856q6x675ly542ig0plbqcyab6ksfzijlyf1hzhgg3sgwgrcyb"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://github.com/mitsuhiko/itsdangerous")
|
||
(synopsis "Python library for passing data to/from untrusted environments")
|
||
(description
|
||
"Itsdangerous provides various helpers to pass trusted data to untrusted
|
||
environments and back.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-itsdangerous
|
||
(package-with-python2 python-itsdangerous))
|
||
|
||
(define-public python-pyyaml
|
||
(package
|
||
(name "python-pyyaml")
|
||
(version "3.11")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/P/PyYAML/PyYAML-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1s26125vfnskng58ym37xhwv8v0mm95b2cwbjfag8prfhy596v63"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("libyaml" ,libyaml)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pyyaml.org/wiki/PyYAML")
|
||
(synopsis "YAML parser and emitter for Python")
|
||
(description
|
||
"PyYAML is a YAML parser and emitter for Python. PyYAML features a
|
||
complete YAML 1.1 parser, Unicode support, pickle support, capable extension
|
||
API, and sensible error messages. PyYAML supports standard YAML tags and
|
||
provides Python-specific tags that allow to represent an arbitrary Python
|
||
object.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pyyaml
|
||
(package-with-python2 python-pyyaml))
|
||
|
||
(define-public python-virtualenv
|
||
(package
|
||
(name "python-virtualenv")
|
||
(version "1.11.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/v/virtualenv/virtualenv-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1xq4prmg25n9cz5zcvbqx68lmc3kl39by582vd8pzs9f3qalqyiy"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-mock" ,python-mock)
|
||
("python-nose" ,python-nose)))
|
||
(home-page "https://virtualenv.pypa.io/")
|
||
(synopsis "Virtual Python environment builder")
|
||
(description
|
||
"Virtualenv is a tool to create isolated Python environments.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-virtualenv
|
||
(package-with-python2 python-virtualenv))
|
||
|
||
(define-public python-markupsafe
|
||
(package
|
||
(name "python-markupsafe")
|
||
(version "0.23")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/M/MarkupSafe/MarkupSafe-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1hvip33wva3fnmvfp9x5klqri7hpl1hkgqmjbss18nmrb7zimv54"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://github.com/mitsuhiko/markupsafe")
|
||
(synopsis "XML/HTML/XHTML markup safe string implementation for Python")
|
||
(description
|
||
"Markupsafe provides an XML/HTML/XHTML markup safe string implementation
|
||
for Python.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-markupsafe
|
||
(package-with-python2 python-markupsafe))
|
||
|
||
(define-public python-jinja2
|
||
(package
|
||
(name "python-jinja2")
|
||
(version "2.7.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/J/Jinja2/Jinja2-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1nwg9yfqgy421lncnm63k1zf9xkd1klc0jm0fr4p3dad01fsq91f"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-markupsafe" ,python-markupsafe)))
|
||
(home-page "http://jinja.pocoo.org/")
|
||
(synopsis "Python template engine")
|
||
(description
|
||
"Jinja2 is a small but fast and easy to use stand-alone template engine
|
||
written in pure Python.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-jinja2
|
||
(package-with-python2 python-jinja2))
|
||
|
||
(define-public python-docutils
|
||
(package
|
||
(name "python-docutils")
|
||
(version "0.12")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/d/docutils/docutils-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1ylnjnw1x4b2y7blr6x35ncdzn69k253kw4cdkv6asdb21w73ny7"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
'(#:tests? #f)) ; no setup.py test command
|
||
(home-page "http://docutils.sourceforge.net/")
|
||
(synopsis "Python Documentation Utilities")
|
||
(description
|
||
"Docutils is a modular system for processing documentation into useful
|
||
formats, such as HTML, XML, and LaTeX. For input Docutils supports
|
||
reStructuredText.")
|
||
;; Most of the source code is public domain, but some source files are
|
||
;; licensed under the PFSL, BSD 2-clause, and GPLv3+ licenses.
|
||
(license (list public-domain psfl bsd-2 gpl3+))))
|
||
|
||
(define-public python2-docutils
|
||
(package-with-python2 python-docutils))
|
||
|
||
(define-public python-pygments
|
||
(package
|
||
(name "python-pygments")
|
||
(version "1.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/P/Pygments/Pygments-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1h11r6ss8waih51vcksfvzghfxiav2f8svc0812fa5kmyz5d97kr"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pygments.org/")
|
||
(synopsis "Syntax highlighting")
|
||
(description
|
||
"Pygments is a syntax highlighting package written in Python.")
|
||
(license bsd-2)))
|
||
|
||
(define-public python2-pygments
|
||
(package-with-python2 python-pygments))
|
||
|
||
(define-public python-sphinx
|
||
(package
|
||
(name "python-sphinx")
|
||
(version "1.2.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/S/Sphinx/Sphinx-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"011xizm3jnmf4cvs5i6kgf6c5nn046h79i8j0vd0f27yw9j3p4wl"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-jinja2" ,python-jinja2)
|
||
("python-docutils" ,python-docutils)
|
||
("python-pygments" ,python-pygments)))
|
||
(home-page "http://sphinx-doc.org/")
|
||
(synopsis "Python documentation generator")
|
||
(description "Sphinx is a tool that makes it easy to create documentation
|
||
for Python projects or other documents consisting of multiple reStructuredText
|
||
sources.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-sphinx
|
||
(package-with-python2 python-sphinx))
|
||
|
||
(define-public python-sphinx-rtd-theme
|
||
(package
|
||
(name "python-sphinx-rtd-theme")
|
||
(version "0.1.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/s/"
|
||
"sphinx_rtd_theme/sphinx_rtd_theme-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"19nw3rn7awplcdrz63kg1njqwkbymfg9lwn7l2grhdyhyr2gaa8g"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(;; With standard flags, the install phase attempts to create a zip'd
|
||
;; egg file, and fails with an error: 'ZIP does not support timestamps
|
||
;; before 1980'
|
||
#:configure-flags '("--single-version-externally-managed"
|
||
"--record=sphinx-rtd-theme.txt")))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(inputs
|
||
`(("python-docutils" ,python-docutils)
|
||
("python-sphinx" ,python-sphinx)))
|
||
(home-page "https://github.com/snide/sphinx_rtd_theme/")
|
||
(synopsis "ReadTheDocs.org theme for Sphinx")
|
||
(description "A theme for Sphinx used by ReadTheDocs.org.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-sphinx-rtd-theme
|
||
(package-with-python2 python-sphinx-rtd-theme))
|
||
|
||
(define-public python-scikit-learn
|
||
(package
|
||
(name "python-scikit-learn")
|
||
(version "0.16.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://github.com/scikit-learn/scikit-learn/archive/"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"140skabifgc7lvvj873pnzlwx0ni6q8qkrsyad2ccjb3h8rxzkih"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'check 'set-HOME
|
||
;; some tests require access to "$HOME"
|
||
(lambda _ (setenv "HOME" "/tmp"))
|
||
;; Tests can only be run after the library has been installed and not
|
||
;; within the source directory.
|
||
(alist-cons-after
|
||
'install 'check
|
||
(lambda _
|
||
(with-directory-excursion "/tmp"
|
||
;; With Python 3 one test of 3334 fails
|
||
;; (sklearn.tests.test_common.test_transformers); see
|
||
;; https://github.com/scikit-learn/scikit-learn/issues/3693
|
||
(system* "nosetests" "-v" "sklearn")))
|
||
(alist-delete 'check %standard-phases)))))
|
||
(inputs
|
||
`(("openblas" ,openblas)
|
||
("python-nose" ,python-nose)))
|
||
(propagated-inputs
|
||
`(("python-numpy" ,python-numpy)
|
||
("python-scipy" ,python-scipy)))
|
||
(home-page "http://scikit-learn.org/")
|
||
(synopsis "Machine Learning in Python")
|
||
(description
|
||
"Scikit-learn provides simple and efficient tools for data
|
||
mining and data analysis.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-scikit-learn
|
||
(let ((scikit (package-with-python2 python-scikit-learn)))
|
||
(package (inherit scikit)
|
||
(propagated-inputs
|
||
`(("python2-numpy" ,python2-numpy)
|
||
("python2-scipy" ,python2-scipy)
|
||
,@(alist-delete
|
||
"python-numpy"
|
||
(alist-delete
|
||
"python-scipy" (package-propagated-inputs scikit))))))))
|
||
|
||
(define-public python-scikit-image
|
||
(package
|
||
(name "python-scikit-image")
|
||
(version "0.11.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/s/scikit-image/scikit-image-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0jz416fqvpahqyffw8plmszzfj669w8wvf3y9clnr5lr6a7md3kn"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs
|
||
`(("python-matplotlib" ,python-matplotlib)
|
||
("python-networkx" ,python-networkx)
|
||
("python-numpy" ,python-numpy)
|
||
("python-scipy" ,python-scipy)
|
||
("python-six" ,python-six)
|
||
("python-pillow" ,python-pillow)))
|
||
(native-inputs
|
||
`(("python-cython" ,python-cython)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://scikit-image.org/")
|
||
(synopsis "Image processing in Python")
|
||
(description
|
||
"scikit-image is a collection of algorithms for image processing.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-scikit-image
|
||
(let ((scikit-image (package-with-python2 python-scikit-image)))
|
||
(package (inherit scikit-image)
|
||
(native-inputs
|
||
`(("python2-mock" ,python2-mock)
|
||
,@(package-native-inputs scikit-image)))
|
||
(propagated-inputs
|
||
`(("python2-pytz" ,python2-pytz)
|
||
,@(package-propagated-inputs scikit-image))))))
|
||
|
||
(define-public python-redis
|
||
(package
|
||
(name "python-redis")
|
||
(version "2.10.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/r/redis/redis-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1701qjwn4n05q90fdg4bsg96s27xf5s4hsb4gxhv3xk052q3gyx4"))))
|
||
(build-system python-build-system)
|
||
;; Tests require a running Redis server
|
||
(arguments '(#:tests? #f))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-pytest" ,python-pytest)))
|
||
(home-page "https://github.com/andymccurdy/redis-py")
|
||
(synopsis "Redis Python client")
|
||
(description
|
||
"This package provides a Python interface to the Redis key-value store.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-redis
|
||
(package-with-python2 python-redis))
|
||
|
||
(define-public python-rq
|
||
(package
|
||
(name "python-rq")
|
||
(version "0.5.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/r/rq/rq-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0b0z5hn8wkfg300hx7816csgv3bcfamlr29fi3yzgqmpqxwj3fix"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs
|
||
`(("python-click" ,python-click)
|
||
("python-redis" ,python-redis)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://python-rq.org/")
|
||
(synopsis "Simple job queues for Python")
|
||
(description
|
||
"RQ (Redis Queue) is a simple Python library for queueing jobs and
|
||
processing them in the background with workers. It is backed by Redis and it
|
||
is designed to have a low barrier to entry.")
|
||
(license bsd-2)))
|
||
|
||
(define-public python2-rq
|
||
(package-with-python2 python-rq))
|
||
|
||
(define-public python-cython
|
||
(package
|
||
(name "python-cython")
|
||
(version "0.21.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "http://cython.org/release/Cython-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0ddz2l2dvcy5hdkxx4xlfiwpccvwia7ixgcy4h0pdv46a4i4vxj3"))))
|
||
(build-system python-build-system)
|
||
;; we need the full python package and not just the python-wrapper
|
||
;; because we need libpython3.3m.so
|
||
(inputs
|
||
`(("python" ,python)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'check 'set-HOME
|
||
;; some tests require access to "$HOME/.cython"
|
||
(lambda* _ (setenv "HOME" "/tmp"))
|
||
(alist-replace
|
||
'check
|
||
(lambda _ (zero? (system* "python" "runtests.py" "-vv")))
|
||
%standard-phases))))
|
||
(home-page "http://cython.org/")
|
||
(synopsis "C extensions for Python")
|
||
(description "Cython is an optimising static compiler for both the Python
|
||
programming language and the extended Cython programming language. It makes
|
||
writing C extensions for Python as easy as Python itself.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python2-cython
|
||
(package (inherit (package-with-python2 python-cython))
|
||
(name "python2-cython")
|
||
(inputs
|
||
`(("python-2" ,python-2))))) ; this is not automatically changed
|
||
|
||
;; This version of numpy is missing the documentation and is only used to
|
||
;; build matplotlib which is required to build numpy's documentation.
|
||
(define python-numpy-bootstrap
|
||
(package
|
||
(name "python-numpy-bootstrap")
|
||
(version "1.9.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/numpy"
|
||
"/numpy-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"070ybfvpgfmiz2hs94x445hvkh9dh52nyi0m8jp5kdihgvhbnx80"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-nose" ,python-nose)
|
||
("openblas" ,openblas)
|
||
("lapack" ,lapack)))
|
||
(native-inputs
|
||
`(("gfortran" ,gfortran)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'build 'set-environment-variables
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(call-with-output-file "site.cfg"
|
||
(lambda (port)
|
||
(format port
|
||
"[openblas]
|
||
libraries = openblas
|
||
library_dirs = ~a/lib
|
||
include_dirs = ~a/include
|
||
|
||
[lapack]
|
||
lapack_libs = lapack
|
||
library_dirs = ~a/lib
|
||
include_dirs = ~a/include
|
||
"
|
||
(assoc-ref inputs "openblas")
|
||
(assoc-ref inputs "openblas")
|
||
(assoc-ref inputs "lapack")
|
||
(assoc-ref inputs "lapack"))))
|
||
;; Use "gcc" executable, not "cc".
|
||
(substitute* "numpy/distutils/system_info.py"
|
||
(("c = distutils\\.ccompiler\\.new_compiler\\(\\)")
|
||
"c = distutils.ccompiler.new_compiler(); c.set_executables(compiler='gcc',compiler_so='gcc',linker_exe='gcc',linker_so='gcc -shared')"))
|
||
#t)
|
||
;; Tests can only be run after the library has been installed and not
|
||
;; within the source directory.
|
||
(alist-cons-after
|
||
'install 'check
|
||
(lambda _
|
||
(with-directory-excursion "/tmp"
|
||
(zero? (system* "python" "-c"
|
||
"import numpy; numpy.test(verbose=2)"))))
|
||
(alist-delete
|
||
'check
|
||
%standard-phases)))))
|
||
(home-page "http://www.numpy.org/")
|
||
(synopsis "Fundamental package for scientific computing with Python")
|
||
(description "NumPy is the fundamental package for scientific computing
|
||
with Python. It contains among other things: a powerful N-dimensional array
|
||
object, sophisticated (broadcasting) functions, tools for integrating C/C++
|
||
and Fortran code, useful linear algebra, Fourier transform, and random number
|
||
capabilities.")
|
||
(license bsd-3)))
|
||
|
||
(define python2-numpy-bootstrap
|
||
(package-with-python2 python-numpy-bootstrap))
|
||
|
||
(define-public python2-fastlmm
|
||
(package
|
||
(name "python2-fastlmm")
|
||
(version "0.2.14")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/f/fastlmm"
|
||
"/fastlmm-" version ".zip"))
|
||
(sha256
|
||
(base32
|
||
"023sydkrc3yxad2bycar02jfswwlh4199kafzhf2bssyx2c3xa0l"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2)) ; only Python 2.7 is supported
|
||
(propagated-inputs
|
||
`(("python2-numpy" ,python2-numpy)
|
||
("python2-scipy" ,python2-scipy)
|
||
("python2-matplotlib" ,python2-matplotlib)
|
||
("python2-pandas" ,python2-pandas)
|
||
("python2-scikit-learn" ,python2-scikit-learn)
|
||
("python2-cython" ,python2-cython)
|
||
("python2-pysnptools" ,python2-pysnptools)))
|
||
(native-inputs
|
||
`(("unzip" ,unzip)
|
||
("python2-mock" ,python2-mock)
|
||
("python2-setuptools" ,python2-setuptools)))
|
||
(home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/fastlmm/")
|
||
(synopsis "Perform genome-wide association studies on large data sets")
|
||
(description
|
||
"FaST-LMM, which stands for Factored Spectrally Transformed Linear Mixed
|
||
Models, is a program for performing both single-SNP and SNP-set genome-wide
|
||
association studies (GWAS) on extremely large data sets.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python-numpy
|
||
(package (inherit python-numpy-bootstrap)
|
||
(name "python-numpy")
|
||
(outputs '("out" "doc"))
|
||
(inputs
|
||
`(("which" ,which)
|
||
("python-setuptools" ,python-setuptools)
|
||
("python-matplotlib" ,python-matplotlib)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-pyparsing" ,python-pyparsing)
|
||
("python-numpydoc" ,python-numpydoc)
|
||
,@(package-inputs python-numpy-bootstrap)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("texlive" ,texlive)
|
||
("texinfo" ,texinfo)
|
||
("perl" ,perl)
|
||
,@(package-native-inputs python-numpy-bootstrap)))
|
||
(arguments
|
||
`(,@(substitute-keyword-arguments
|
||
(package-arguments python-numpy-bootstrap)
|
||
((#:phases phases)
|
||
`(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append
|
||
data "/doc/" ,name "-"
|
||
,(package-version python-numpy-bootstrap)))
|
||
(info (string-append data "/info"))
|
||
(html (string-append doc "/html"))
|
||
(pyver ,(string-append "PYVER=")))
|
||
(with-directory-excursion "doc"
|
||
(mkdir-p html)
|
||
(system* "make" "html" pyver)
|
||
(system* "make" "latex" "PAPER=a4" pyver)
|
||
(system* "make" "-C" "build/latex"
|
||
"all-pdf" "PAPER=a4" pyver)
|
||
;; FIXME: Generation of the info file fails.
|
||
;; (system* "make" "info" pyver)
|
||
;; (mkdir-p info)
|
||
;; (copy-file "build/texinfo/numpy.info"
|
||
;; (string-append info "/numpy.info"))
|
||
(for-each (lambda (file)
|
||
(copy-file (string-append "build/latex" file)
|
||
(string-append doc file)))
|
||
'("/numpy-ref.pdf" "/numpy-user.pdf"))
|
||
(with-directory-excursion "build/html"
|
||
(for-each (lambda (file)
|
||
(let* ((dir (dirname file))
|
||
(tgt-dir (string-append html "/" dir)))
|
||
(unless (equal? "." dir)
|
||
(mkdir-p tgt-dir))
|
||
(copy-file file (string-append html "/" file))))
|
||
(find-files "." ".*"))))))
|
||
,phases)))))))
|
||
|
||
(define-public python2-numpy
|
||
(let ((numpy (package-with-python2 python-numpy)))
|
||
(package (inherit numpy)
|
||
;; Make sure we use exactly PYTHON2-MATPLOTLIB, which is customized for
|
||
;; Python 2.
|
||
(inputs `(("python2-matplotlib" ,python2-matplotlib)
|
||
,@(alist-delete "python-matplotlib"
|
||
(package-inputs numpy)))))))
|
||
|
||
(define-public python-pyparsing
|
||
(package
|
||
(name "python-pyparsing")
|
||
(version "2.0.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/pyparsing"
|
||
"/pyparsing-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0kw4py7gn45j93q8r7bzajfrjdc3xlsn2yzln41lf9zmrghjkrq6"))))
|
||
(build-system python-build-system)
|
||
(outputs '("out" "doc"))
|
||
(arguments
|
||
`(#:tests? #f ; no test target
|
||
#:modules ((guix build python-build-system)
|
||
(guix build utils))
|
||
#:phases
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((doc (string-append (assoc-ref outputs "doc")
|
||
"/share/doc/" ,name "-" ,version))
|
||
(html-doc (string-append doc "/html"))
|
||
(examples (string-append doc "/examples")))
|
||
(mkdir-p html-doc)
|
||
(mkdir-p examples)
|
||
(for-each
|
||
(lambda (dir tgt)
|
||
(map (lambda (file)
|
||
(copy-file file (string-append tgt "/" (basename file))))
|
||
(find-files dir ".*")))
|
||
(list "docs" "htmldoc" "examples")
|
||
(list doc html-doc examples))))
|
||
%standard-phases)))
|
||
(home-page "http://pyparsing.wikispaces.com")
|
||
(synopsis "Python parsing class library")
|
||
(description
|
||
"The pyparsing module is an alternative approach to creating and
|
||
executing simple grammars, vs. the traditional lex/yacc approach, or the use
|
||
of regular expressions. The pyparsing module provides a library of classes
|
||
that client code uses to construct the grammar directly in Python code.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pyparsing
|
||
(package-with-python2 python-pyparsing))
|
||
|
||
(define-public python-numpydoc
|
||
(package
|
||
(name "python-numpydoc")
|
||
(version "0.5")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/n/numpydoc/numpydoc-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0d4dnifaxkll50jx6czj05y8cb4ny60njd2wz299sj2jxfy51w4k"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
'(begin
|
||
;; Drop a test requiring matplotlib, which we cannot add as an
|
||
;; input since it would create a circular dependency: Extend the
|
||
;; test for Python 3, where it is already dropped, to Python 2.
|
||
(substitute* "numpydoc/tests/test_plot_directive.py"
|
||
(("3") "2"))))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-docutils" ,python-docutils)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-nose" ,python-nose)))
|
||
(home-page "https://pypi.python.org/pypi/numpydoc")
|
||
(synopsis
|
||
"Numpy's Sphinx extensions")
|
||
(description
|
||
"Sphinx extension to support docstrings in Numpy format.")
|
||
(license bsd-2)))
|
||
|
||
(define-public python2-numpydoc
|
||
(package-with-python2 python-numpydoc))
|
||
|
||
(define-public python-matplotlib
|
||
(package
|
||
(name "python-matplotlib")
|
||
(version "1.4.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/matplotlib"
|
||
"/matplotlib-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0m6v9nwdldlwk22gcd339zg6mny5m301fxgks7z8sb8m9wawg8qp"))))
|
||
(build-system python-build-system)
|
||
(outputs '("out" "doc"))
|
||
(propagated-inputs ; the following packages are all needed at run time
|
||
`(("python-pyparsing" ,python-pyparsing)
|
||
("python-pygobject" ,python-pygobject)
|
||
("gobject-introspection" ,gobject-introspection)
|
||
;; The 'gtk+' package (and 'gdk-pixbuf', 'atk' and 'pango' propagated
|
||
;; from 'gtk+') provides the required 'typelib' files used by
|
||
;; 'gobject-introspection'. The location of these files is set with the
|
||
;; help of the environment variable GI_TYPELIB_PATH. At build time this
|
||
;; is done automatically by a 'native-search-path' procedure. However,
|
||
;; at run-time the user must set this variable as follows:
|
||
;;
|
||
;; export GI_TYPELIB_PATH=~/.guix-profile/lib/girepository-1.0
|
||
("gtk+" ,gtk+)
|
||
;; From version 1.4.0 'matplotlib' makes use of 'cairocffi' instead of
|
||
;; 'pycairo'. However, 'pygobject' makes use of a 'pycairo' 'context'
|
||
;; object. For this reason we need to import both libraries.
|
||
;; https://pythonhosted.org/cairocffi/cffi_api.html#converting-pycairo
|
||
("python-pycairo" ,python-pycairo)
|
||
("python-cairocffi" ,python-cairocffi)))
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-dateutil" ,python-dateutil-2)
|
||
("python-six" ,python-six)
|
||
("python-pytz" ,python-pytz)
|
||
("python-numpy" ,python-numpy-bootstrap)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-numpydoc" ,python-numpydoc)
|
||
("python-nose" ,python-nose)
|
||
("python-mock" ,python-mock)
|
||
("libpng" ,libpng)
|
||
("imagemagick" ,imagemagick)
|
||
("freetype" ,freetype)
|
||
("cairo" ,cairo)
|
||
("glib" ,glib)
|
||
("python-pillow" ,python-pillow)
|
||
;; FIXME: Add backends when available.
|
||
;("python-wxpython" ,python-wxpython)
|
||
;("python-pyqt" ,python-pyqt)
|
||
))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("texlive" ,texlive)
|
||
("texinfo" ,texinfo)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'build 'configure-environment
|
||
(lambda* (#:key outputs inputs #:allow-other-keys)
|
||
(let ((cairo (assoc-ref inputs "cairo"))
|
||
(gtk+ (assoc-ref inputs "gtk+")))
|
||
;; Setting these directories in the 'basedirlist' of 'setup.cfg'
|
||
;; has not effect.
|
||
(setenv "LD_LIBRARY_PATH"
|
||
(string-append cairo "/lib:" gtk+ "/lib"))
|
||
(setenv "HOME" (getcwd))
|
||
(call-with-output-file "setup.cfg"
|
||
(lambda (port)
|
||
(format port "[rc_options]~%
|
||
backend = GTK3Agg~%")))))
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(info (string-append data "/info"))
|
||
(html (string-append doc "/html")))
|
||
(with-directory-excursion "doc"
|
||
;; Produce pdf in 'A4' format.
|
||
(substitute* (find-files "." "conf\\.py")
|
||
(("latex_paper_size = 'letter'")
|
||
"latex_paper_size = 'a4'"))
|
||
(mkdir-p html)
|
||
(mkdir-p info)
|
||
;; The doc recommends to run the 'html' target twice.
|
||
(system* "python" "make.py" "html")
|
||
(system* "python" "make.py" "html")
|
||
(system* "python" "make.py" "latex")
|
||
(system* "python" "make.py" "texinfo")
|
||
(copy-file "build/texinfo/matplotlib.info"
|
||
(string-append info "/matplotlib.info"))
|
||
(copy-file "build/latex/Matplotlib.pdf"
|
||
(string-append doc "/Matplotlib.pdf"))
|
||
(copy-recursively "build/html" html))))
|
||
%standard-phases))))
|
||
(home-page "http://matplotlib.org")
|
||
(synopsis "2D plotting library for Python")
|
||
(description
|
||
"Matplotlib is a Python 2D plotting library which produces publication
|
||
quality figures in a variety of hardcopy formats and interactive environments
|
||
across platforms. Matplotlib can be used in Python scripts, the python and
|
||
ipython shell, web application servers, and six graphical user interface
|
||
toolkits.")
|
||
(license psfl)))
|
||
|
||
(define-public python2-matplotlib
|
||
(let ((matplotlib (package-with-python2 python-matplotlib)))
|
||
(package (inherit matplotlib)
|
||
;; Make sure to use special packages for Python 2 instead
|
||
;; of those automatically rewritten by package-with-python2.
|
||
(propagated-inputs
|
||
`(("python2-pycairo" ,python2-pycairo)
|
||
("python2-pygobject-2" ,python2-pygobject-2)
|
||
,@(alist-delete "python-pycairo"
|
||
(alist-delete "python-pygobject"
|
||
(package-propagated-inputs
|
||
matplotlib))))))))
|
||
|
||
(define-public python2-pysnptools
|
||
(package
|
||
(name "python2-pysnptools")
|
||
(version "0.2.13")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/pysnptools"
|
||
"/pysnptools-" version ".zip"))
|
||
(sha256
|
||
(base32
|
||
"1rzf5qvwfvd2pp84b14pb2gdvxdk5avnj7rb41ac8gndpkr9g6ib"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2)) ; only Python 2.7 is supported
|
||
(propagated-inputs
|
||
`(("python2-numpy" ,python2-numpy)
|
||
("python2-scipy" ,python2-scipy)
|
||
("python2-pandas" ,python2-pandas)
|
||
("python2-cython" ,python2-cython)))
|
||
(native-inputs
|
||
`(("unzip" ,unzip)
|
||
("python2-setuptools" ,python2-setuptools)))
|
||
(home-page "http://research.microsoft.com/en-us/um/redmond/projects/mscompbio/")
|
||
(synopsis "Library for reading and manipulating genetic data")
|
||
(description
|
||
"PySnpTools is a library for reading and manipulating genetic data. It
|
||
can, for example, efficiently read whole PLINK *.bed/bim/fam files or parts of
|
||
those files. It can also efficiently manipulate ranges of integers using set
|
||
operators such as union, intersection, and difference.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python-scipy
|
||
(package
|
||
(name "python-scipy")
|
||
(version "0.15.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/scipy"
|
||
"/scipy-" version ".tar.xz"))
|
||
(sha256
|
||
(base32
|
||
"0fsqi05s035d7p6s8h3h2pvk1axias16chy17rw9l1bxvrfhmncf"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-numpy" ,python-numpy)
|
||
("python-matplotlib" ,python-matplotlib)
|
||
("python-pyparsing" ,python-pyparsing)
|
||
("python-nose" ,python-nose)
|
||
("python-sphinx" ,python-sphinx)
|
||
("lapack" ,lapack)
|
||
("openblas" ,openblas)))
|
||
(native-inputs
|
||
`(("gfortran" ,gfortran)
|
||
("texlive" ,texlive)
|
||
("perl" ,perl)))
|
||
(outputs '("out" "doc"))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-before
|
||
'build 'configure-openblas
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(call-with-output-file "site.cfg"
|
||
(lambda (port)
|
||
(format port
|
||
"[blas]
|
||
libraries = openblas
|
||
library_dirs = ~a/lib
|
||
include_dirs = ~a/include
|
||
[atlas]
|
||
library_dirs = ~a/lib
|
||
atlas_libs = openblas
|
||
"
|
||
(assoc-ref inputs "openblas")
|
||
(assoc-ref inputs "openblas")
|
||
(assoc-ref inputs "openblas"))))
|
||
#t)
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(html (string-append doc "/html"))
|
||
(pyver ,(string-append "PYVER=")))
|
||
(with-directory-excursion "doc"
|
||
;; Fix generation of images for mathematical expressions.
|
||
(substitute* (find-files "source" "conf\\.py")
|
||
(("pngmath_use_preview = True")
|
||
"pngmath_use_preview = False"))
|
||
(mkdir-p html)
|
||
(system* "make" "html" pyver)
|
||
(system* "make" "latex" "PAPER=a4" pyver)
|
||
(system* "make" "-C" "build/latex" "all-pdf" "PAPER=a4" pyver)
|
||
(copy-file "build/latex/scipy-ref.pdf"
|
||
(string-append doc "/scipy-ref.pdf"))
|
||
(with-directory-excursion "build/html"
|
||
(for-each (lambda (file)
|
||
(let* ((dir (dirname file))
|
||
(tgt-dir (string-append html "/" dir)))
|
||
(unless (equal? "." dir)
|
||
(mkdir-p tgt-dir))
|
||
(copy-file file (string-append html "/" file))))
|
||
(find-files "." ".*"))))))
|
||
;; Tests can only be run after the library has been installed and not
|
||
;; within the source directory.
|
||
(alist-cons-after
|
||
'install 'check
|
||
(lambda _
|
||
(with-directory-excursion "/tmp"
|
||
(zero? (system* "python" "-c" "import scipy; scipy.test()"))))
|
||
(alist-delete
|
||
'check
|
||
%standard-phases))))))
|
||
(home-page "http://www.scipy.org/")
|
||
(synopsis "The Scipy library provides efficient numerical routines")
|
||
(description "The SciPy library is one of the core packages that make up
|
||
the SciPy stack. It provides many user-friendly and efficient numerical
|
||
routines such as routines for numerical integration and optimization.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-scipy
|
||
(let ((scipy (package-with-python2 python-scipy)))
|
||
(package (inherit scipy)
|
||
;; Use packages customized for python-2.
|
||
(inputs `(("python2-matplotlib" ,python2-matplotlib)
|
||
("python2-numpy" ,python2-numpy)
|
||
,@(alist-delete "python-matplotlib"
|
||
(alist-delete "python-numpy"
|
||
(package-inputs scipy))))))))
|
||
|
||
(define-public python-sqlalchemy
|
||
(package
|
||
(name "python-sqlalchemy")
|
||
(version "0.9.7")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/S/"
|
||
"SQLAlchemy/SQLAlchemy-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"059ayifj5l08v6vv56anhyibyllscn10dlzr2fcw68gz1hfjdzsz"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-cython" ,python-cython) ;for c extensions
|
||
("python-pytest" ,python-pytest)
|
||
("python-mock" ,python-mock))) ;for tests
|
||
(arguments
|
||
`(#:phases (alist-replace
|
||
'check
|
||
(lambda _ (zero? (system* "py.test")))
|
||
%standard-phases)))
|
||
(home-page "http://www.sqlalchemy.org")
|
||
(synopsis "Database abstraction library")
|
||
(description
|
||
"SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that
|
||
gives application developers the full power and flexibility of SQL. It
|
||
provides a full suite of well known enterprise-level persistence patterns,
|
||
designed for efficient and high-performing database access, adapted into a
|
||
simple and Pythonic domain language.")
|
||
(license x11)))
|
||
|
||
(define-public python2-sqlalchemy
|
||
(package-with-python2 python-sqlalchemy))
|
||
|
||
(define-public python-distutils-extra
|
||
(package
|
||
(name "python-distutils-extra")
|
||
(version "2.38")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://launchpad.net/python-distutils-extra/trunk/"
|
||
version "/+download/python-distutils-extra-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0lx15kcbby9zisx33p2h5hgakgwh2bvh0ibag8z0px4j6ifhs41x"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://launchpad.net/python-distutils-extra/")
|
||
(synopsis "Enhancements to Python's distutils")
|
||
(description
|
||
"The python-distutils-extra module enables you to easily integrate
|
||
gettext support, themed icons, and scrollkeeper-based documentation into
|
||
Python's distutils.")
|
||
(license gpl2)))
|
||
|
||
(define-public python2-distutils-extra
|
||
(package-with-python2 python-distutils-extra))
|
||
|
||
(define-public python2-elib.intl
|
||
(package
|
||
(name "python2-elib.intl")
|
||
(version "0.0.3")
|
||
(source
|
||
(origin
|
||
;; This project doesn't tag releases or publish tarballs, so we take
|
||
;; source from a (semi-arbitrary, i.e. latest as of now) git commit.
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/dieterv/elib.intl.git")
|
||
(commit "d09997cfef")))
|
||
(sha256
|
||
(base32
|
||
"0y7vzff9xgbnaay7m0va1arl6g68ncwrvbgwl7jqlclsahzzb09d"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python2-setuptools" ,python2-setuptools)))
|
||
(arguments
|
||
;; incompatible with Python 3 (exception syntax)
|
||
`(#:python ,python-2
|
||
#:tests? #f
|
||
;; With standard flags, the install phase attempts to create a zip'd
|
||
;; egg file, and fails with an error: 'ZIP does not support timestamps
|
||
;; before 1980'
|
||
#:configure-flags '("--single-version-externally-managed"
|
||
"--record=elib.txt")))
|
||
(home-page "https://github.com/dieterv/elib.intl")
|
||
(synopsis "Enhanced internationalization for Python")
|
||
(description
|
||
"The elib.intl module provides enhanced internationalization (I18N)
|
||
services for your Python modules and applications.")
|
||
(license lgpl3+)))
|
||
|
||
(define-public python-pillow
|
||
(package
|
||
(name "python-pillow")
|
||
(version "2.8.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/P/"
|
||
"Pillow/Pillow-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"15n92axxph2s3kvg68bki9gv3nzwgq7130kp7wbblpi1l0cc2q47"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-nose" ,python-nose)))
|
||
(inputs
|
||
`(("freetype" ,freetype)
|
||
("lcms" ,lcms)
|
||
("zlib" ,zlib)
|
||
("libjpeg" ,libjpeg)
|
||
("openjpeg" ,openjpeg)
|
||
("libtiff" ,libtiff)
|
||
("libwebp" ,libwebp)))
|
||
(propagated-inputs
|
||
`(;; Used at runtime for pkg_resources
|
||
("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:phases (alist-cons-after
|
||
'install 'check-installed
|
||
(lambda _
|
||
(begin
|
||
(setenv "HOME" (getcwd))
|
||
(and (zero? (system* "python" "selftest.py" "--installed"))
|
||
(zero? (system* "python" "test-installed.py")))))
|
||
(alist-delete 'check %standard-phases))))
|
||
(home-page "https://pypi.python.org/pypi/Pillow")
|
||
(synopsis "Fork of the Python Imaging Library")
|
||
(description
|
||
"The Python Imaging Library adds image processing capabilities to your
|
||
Python interpreter. This library provides extensive file format support, an
|
||
efficient internal representation, and fairly powerful image processing
|
||
capabilities. The core image library is designed for fast access to data
|
||
stored in a few basic pixel formats. It should provide a solid foundation for
|
||
a general image processing tool.")
|
||
(license (x11-style
|
||
"http://www.pythonware.com/products/pil/license.htm"
|
||
"The PIL Software License"))))
|
||
|
||
(define-public python2-pillow
|
||
(package-with-python2 python-pillow))
|
||
|
||
(define-public python-pycparser
|
||
(package
|
||
(name "python-pycparser")
|
||
(version "2.10")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/p/"
|
||
"pycparser/pycparser-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0v5qfq03yvd1pi0dwlgfai0p3dh9bq94pydn19c4pdn0c6v9hzcm"))))
|
||
(outputs '("out" "doc"))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-replace
|
||
'check
|
||
(lambda _
|
||
(with-directory-excursion "tests"
|
||
(zero? (system* "python" "all_tests.py"))))
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(examples (string-append doc "/examples")))
|
||
(mkdir-p examples)
|
||
(for-each (lambda (file)
|
||
(copy-file (string-append "." file)
|
||
(string-append doc file)))
|
||
'("/README.rst" "/CHANGES" "/LICENSE"))
|
||
(copy-recursively "examples" examples)))
|
||
%standard-phases))))
|
||
(home-page "https://github.com/eliben/pycparser")
|
||
(synopsis "C parser in Python")
|
||
(description
|
||
"Pycparser is a complete parser of the C language, written in pure Python
|
||
using the PLY parsing library. It parses C code into an AST and can serve as
|
||
a front-end for C compilers or analysis tools.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-pycparser
|
||
(package-with-python2 python-pycparser))
|
||
|
||
(define-public python-cffi
|
||
(package
|
||
(name "python-cffi")
|
||
(version "0.8.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/c/"
|
||
"cffi/cffi-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0406j3sgndmx88idv5zxkkrwfqxmjl18pj8gf47nsg4ymzixjci5"))))
|
||
(build-system python-build-system)
|
||
(outputs '("out" "doc"))
|
||
(inputs
|
||
`(("libffi" ,libffi)))
|
||
(propagated-inputs ; required at run-time
|
||
`(("python-pycparser" ,python-pycparser)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:tests? #f ; FIXME: requires pytest
|
||
#:phases
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(html (string-append doc "/html")))
|
||
(with-directory-excursion "doc"
|
||
(system* "make" "html")
|
||
(mkdir-p html)
|
||
(copy-recursively "build/html" html))
|
||
(copy-file "LICENSE" (string-append doc "/LICENSE"))))
|
||
%standard-phases)))
|
||
(home-page "http://cffi.readthedocs.org")
|
||
(synopsis "Foreign function interface for Python")
|
||
(description
|
||
"Foreign Function Interface for Python calling C code.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-cffi
|
||
(package-with-python2 python-cffi))
|
||
|
||
(define-public python-xcffib
|
||
(package
|
||
(name "python-xcffib")
|
||
(version "0.1.9")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/x/"
|
||
"xcffib/xcffib-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0655hzxv57h1a9ja9kwp0ichbkhf3djw32k33d66xp0q37dq2y81"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("libxcb" ,libxcb)
|
||
("python-six" ,python-six)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(propagated-inputs
|
||
`(("python-cffi" ,python-cffi))) ; used at run time
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let ((doc (string-append (assoc-ref outputs "out") "/share"
|
||
"/doc/" ,name "-" ,version)))
|
||
(mkdir-p doc)
|
||
(copy-file "README.md"
|
||
(string-append doc "/README.md"))))
|
||
%standard-phases)))
|
||
(home-page "https://github.com/tych0/xcffib")
|
||
(synopsis "XCB Python bindings")
|
||
(description
|
||
"Xcffib is a replacement for xpyb, an XCB Python bindings. It adds
|
||
support for Python 3 and PyPy. It is based on cffi.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-xcffib
|
||
(package-with-python2 python-xcffib))
|
||
|
||
(define-public python-cairocffi
|
||
(package
|
||
(name "python-cairocffi")
|
||
(version "0.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
;; The archive on pypi is missing the 'utils' directory!
|
||
(uri (string-append "https://github.com/SimonSapin/cairocffi/archive/v"
|
||
version ".tar.gz"))
|
||
(file-name (string-append name "-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"03w5p62sp3nqiccx864sbq0jvh7946277jqx3rcc3dch5xwfvv51"))))
|
||
(build-system python-build-system)
|
||
(outputs '("out" "doc"))
|
||
(inputs
|
||
`(("gdk-pixbuf" ,gdk-pixbuf)
|
||
("cairo" ,cairo)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-docutils" ,python-docutils)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(propagated-inputs
|
||
`(("python-xcffib" ,python-xcffib))) ; used at run time
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(html (string-append doc "/html")))
|
||
(setenv "LD_LIBRARY_PATH"
|
||
(string-append (assoc-ref inputs "cairo") "/lib" ":"
|
||
(assoc-ref inputs "gdk-pixbuf") "/lib"))
|
||
(setenv "LANG" "en_US.UTF-8")
|
||
(mkdir-p html)
|
||
(for-each (lambda (file)
|
||
(copy-file (string-append "." file)
|
||
(string-append doc file)))
|
||
'("/README.rst" "/CHANGES" "/LICENSE"))
|
||
(system* "python" "setup.py" "build_sphinx")
|
||
(copy-recursively "docs/_build/html" html)))
|
||
%standard-phases)))
|
||
(home-page "https://github.com/SimonSapin/cairocffi")
|
||
(synopsis "Python bindings and object-oriented API for Cairo")
|
||
(description
|
||
"Cairocffi is a CFFI-based drop-in replacement for Pycairo, a set of
|
||
Python bindings and object-oriented API for cairo. Cairo is a 2D vector
|
||
graphics library with support for multiple backends including image buffers,
|
||
PNG, PostScript, PDF, and SVG file output.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-cairocffi
|
||
(package-with-python2 python-cairocffi))
|
||
|
||
(define-public python-decorator
|
||
(package
|
||
(name "python-decorator")
|
||
(version "3.4.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/d/decorator/decorator-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0i2bnlkh0p9gs76hb28mafandcrig2fmv56w9ai6mshxwqn0083k"))))
|
||
(build-system python-build-system)
|
||
(arguments '(#:tests? #f)) ; no test target
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://pypi.python.org/pypi/decorator/")
|
||
(synopsis "Python module to simplify usage of decorators")
|
||
(description
|
||
"The aim of the decorator module is to simplify the usage of decorators
|
||
for the average programmer, and to popularize decorators usage giving examples
|
||
of useful decorators, such as memoize, tracing, redirecting_stdout, locked,
|
||
etc. The core of this module is a decorator factory.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-decorator
|
||
(package-with-python2 python-decorator))
|
||
|
||
(define-public python-drmaa
|
||
(package
|
||
(name "python-drmaa")
|
||
(version "0.7.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/d/drmaa/drmaa-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0bzl9f9g34dlhwf09i3fdv7dqqzf2iq0w7d6c2bafx1nlap8qfbh"))))
|
||
(build-system python-build-system)
|
||
;; The test suite requires libdrmaa which is provided by the cluster
|
||
;; environment. At runtime the environment variable DRMAA_LIBRARY_PATH
|
||
;; should be set to the path of the libdrmaa library.
|
||
(arguments '(#:tests? #f))
|
||
(native-inputs
|
||
`(("python-nose" ,python-nose)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://pypi.python.org/pypi/drmaa")
|
||
(synopsis "Python bindings for the DRMAA library")
|
||
(description
|
||
"A Python package for Distributed Resource Management (DRM) job
|
||
submission and control. This package is an implementation of the DRMAA 1.0
|
||
Python language binding specification.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-drmaa
|
||
(package-with-python2 python-drmaa))
|
||
|
||
(define-public python-ipython
|
||
(package
|
||
(name "python-ipython")
|
||
(version "2.3.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://pypi.python.org/packages/source/i/"
|
||
"ipython/ipython-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1764gi5m3ff481rjk336cw6i2h4zlc0nxam9rc5m8m7yl9m4d61y"))))
|
||
(build-system python-build-system)
|
||
(outputs '("out" "doc"))
|
||
;; FIXME: add optional dependencies when available: pyzmq, tornado, ...
|
||
(inputs
|
||
`(("readline" ,readline)
|
||
("python-matplotlib" ,python-matplotlib)
|
||
("python-numpy" ,python-numpy-bootstrap)
|
||
("python-numpydoc" ,python-numpydoc)
|
||
("python-nose" ,python-nose)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("python-sphinx" ,python-sphinx)
|
||
("texlive" ,texlive)
|
||
("texinfo" ,texinfo)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-cons-after
|
||
'install 'install-doc
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(let* ((data (string-append (assoc-ref outputs "doc") "/share"))
|
||
(doc (string-append data "/doc/" ,name "-" ,version))
|
||
(html (string-append doc "/html"))
|
||
(man1 (string-append data "/man/man1"))
|
||
(info (string-append data "/info"))
|
||
(examples (string-append doc "/examples")))
|
||
(setenv "LANG" "en_US.UTF-8")
|
||
(with-directory-excursion "docs"
|
||
;; FIXME: html and pdf fail to build without optional pyzmq
|
||
;(system* "make" "html")
|
||
;(system* "make" "pdf" "PAPER=a4")
|
||
(system* "make" "info"))
|
||
(copy-recursively "docs/man" man1)
|
||
(copy-recursively "examples" examples)
|
||
;; (copy-recursively "docs/build/html" html)
|
||
;; (copy-file "docs/build/latex/ipython.pdf"
|
||
;; (string-append doc "/ipython.pdf"))
|
||
(mkdir-p info)
|
||
(copy-file "docs/build/texinfo/ipython.info"
|
||
(string-append info "/ipython.info"))
|
||
(copy-file "COPYING.rst" (string-append doc "/COPYING.rst"))))
|
||
;; Tests can only be run after the library has been installed and not
|
||
;; within the source directory.
|
||
(alist-cons-after
|
||
'install 'check
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
;; The test procedure appears to miss the fact that some optional
|
||
;; dependencies are missing.
|
||
;; (with-directory-excursion "/tmp"
|
||
;; (zero? (system* (string-append (assoc-ref outputs "out")
|
||
;; "/bin/iptest"))))
|
||
#t)
|
||
(alist-delete
|
||
'check
|
||
%standard-phases)))))
|
||
(home-page "http://ipython.org")
|
||
(synopsis "IPython is a tool for interactive computing in Python")
|
||
(description
|
||
"IPython provides a rich architecture for interactive computing with:
|
||
Powerful interactive shells, a browser-based notebook, support for interactive
|
||
data visualization, embeddable interpreters and tools for parallel
|
||
computing.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-ipython
|
||
(let ((ipython (package-with-python2 python-ipython)))
|
||
(package (inherit ipython)
|
||
;; Make sure we use custom python2-NAME packages.
|
||
(inputs
|
||
`(("python2-matplotlib" ,python2-matplotlib)
|
||
,@(alist-delete "python-matplotlib"
|
||
(package-inputs ipython)))))))
|
||
|
||
(define-public python-isodate
|
||
(package
|
||
(name "python-isodate")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/i/isodate/isodate-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1yqjn0is0p64cmk9xhq4hc6q06jk86d60kg2jws58d78q0qysami"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page
|
||
"http://cheeseshop.python.org/pypi/isodate")
|
||
(synopsis
|
||
"Python date parser and formatter")
|
||
(description
|
||
"Python-isodate is a python module for parsing and formatting
|
||
ISO 8601 dates, time and duration.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-isodate
|
||
(package-with-python2 python-isodate))
|
||
|
||
(define-public python-html5lib
|
||
(package
|
||
(name "python-html5lib")
|
||
(version "1.0b3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/h/html5lib/html5lib-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1l5i6xzckzx4hnh9qzv9q3kyhkgjx2hsi2k9srgci3qizjmvp6ln"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs
|
||
`(("python-six" ,python-six))) ; required to "import html5lib"
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
`(#:test-target "check"))
|
||
(home-page
|
||
"https://github.com/html5lib/html5lib-python")
|
||
(synopsis
|
||
"Python HTML parser based on the WHATWG HTML specifcation")
|
||
(description
|
||
"Html5lib is an HTML parser based on the WHATWG HTML specifcation
|
||
and written in Python.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-html5lib
|
||
(package-with-python2 python-html5lib))
|
||
|
||
(define-public python-urwid
|
||
(package
|
||
(name "python-urwid")
|
||
(version "1.3.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/u/urwid/urwid-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"18mb0yy94sjc434rd61m2sfnw27sa0nyrszpj5a9r9zh7fnlzw19"))))
|
||
(build-system python-build-system)
|
||
(native-inputs `(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://urwid.org")
|
||
(synopsis "Console user interface library for Python")
|
||
(description
|
||
"Urwid is a curses-based UI/widget library for Python. It includes many
|
||
features useful for text console applications.")
|
||
(license lgpl2.1+)))
|
||
|
||
(define-public python2-urwid
|
||
(package-with-python2 python-urwid))
|
||
|
||
(define-public python-dbus
|
||
(package
|
||
(name "python-dbus")
|
||
(version "1.2.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://dbus.freedesktop.org/releases/dbus-python/dbus-python-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1py62qir966lvdkngg0v8k1khsqxwk5m4s8nflpk1agk5f5nqb71"))))
|
||
(build-system gnu-build-system)
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)))
|
||
(inputs
|
||
`(("python" ,python)
|
||
("dbus-glib" ,dbus-glib)))
|
||
(synopsis "Python bindings for D-bus")
|
||
(description "python-dbus provides bindings for libdbus, the reference
|
||
implementation of D-Bus.")
|
||
(home-page "http://www.freedesktop.org/wiki/Software/DBusBindings/")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-dbus
|
||
(package (inherit python-dbus)
|
||
(name "python2-dbus")
|
||
(inputs `(("python" ,python-2)
|
||
,@(alist-delete "python"
|
||
(package-inputs python-dbus)
|
||
equal?)))
|
||
;; FIXME: on Python 2, the test_utf8 fails with:
|
||
;; "ValueError: unichr() arg not in range(0x10000) (narrow Python build)"
|
||
(arguments `(#:tests? #f))))
|
||
|
||
(define-public python-apsw
|
||
(package
|
||
(name "python-apsw")
|
||
(version "3.8.7.3-r1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/a/apsw/apsw-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1rgxdypg7hym0qny15rx5khrghx9fkppfgsfa2s8lg917924mv7l"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("sqlite" ,sqlite)))
|
||
(arguments
|
||
`(#:phases
|
||
;; swap check and install phases
|
||
(alist-cons-after
|
||
'install 'check
|
||
(assoc-ref %standard-phases 'check)
|
||
(alist-delete
|
||
'check
|
||
%standard-phases))))
|
||
(home-page "https://github.com/rogerbinns/apsw/")
|
||
(synopsis "Another Python SQLite Wrapper")
|
||
(description "APSW is a Python wrapper for the SQLite
|
||
embedded relational database engine. In contrast to other wrappers such as
|
||
pysqlite it focuses on being a minimal layer over SQLite attempting just to
|
||
translate the complete SQLite API into Python.")
|
||
(license license:zlib)))
|
||
|
||
(define-public python2-apsw
|
||
(package-with-python2 python-apsw))
|
||
|
||
(define-public python-lxml
|
||
(package
|
||
(name "python-lxml")
|
||
(version "3.4.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/l/lxml/lxml-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0pd23qz8vms1mgm41p96h4vac5y91igs4wr9640gnvxgk019kmf7"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("libxml2" ,libxml2)
|
||
("libxslt" ,libxslt)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://lxml.de/")
|
||
(synopsis
|
||
"Python XML processing library")
|
||
(description
|
||
"The lxml XML toolkit is a Pythonic binding for the C libraries
|
||
libxml2 and libxslt.")
|
||
(license bsd-3))) ; and a few more, see LICENSES.txt
|
||
|
||
(define-public python2-lxml
|
||
(package-with-python2 python-lxml))
|
||
|
||
(define-public python2-pil
|
||
(package
|
||
(name "python2-pil")
|
||
(version "1.1.7")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://effbot.org/downloads/Imaging-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"04aj80jhfbmxqzvmq40zfi4z3cw6vi01m3wkk6diz3lc971cfnw9"))
|
||
(modules '((guix build utils)))
|
||
(snippet
|
||
;; Adapt to newer freetype. As the package is unmaintained upstream,
|
||
;; there is no use in creating a patch and reporting it.
|
||
'(substitute* "_imagingft.c"
|
||
(("freetype/")
|
||
"freetype2/")))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("freetype" ,freetype)
|
||
("libjpeg" ,libjpeg)
|
||
("libtiff" ,libtiff)
|
||
("python-setuptools" ,python-setuptools)
|
||
("zlib" ,zlib)))
|
||
(arguments
|
||
;; Only the fork python-pillow works with Python 3.
|
||
`(#:python ,python-2
|
||
#:tests? #f ; no check target
|
||
#:phases
|
||
(alist-cons-before
|
||
'build 'configure
|
||
;; According to README and setup.py, manual configuration is
|
||
;; the preferred way of "searching" for inputs.
|
||
;; lcms is not found, TCL_ROOT refers to the unavailable tkinter.
|
||
(lambda* (#:key inputs #:allow-other-keys)
|
||
(let ((jpeg (assoc-ref inputs "libjpeg"))
|
||
(zlib (assoc-ref inputs "zlib"))
|
||
(tiff (assoc-ref inputs "libtiff"))
|
||
(freetype (assoc-ref inputs "freetype")))
|
||
(substitute* "setup.py"
|
||
(("JPEG_ROOT = None")
|
||
(string-append "JPEG_ROOT = libinclude(\"" jpeg "\")"))
|
||
(("ZLIB_ROOT = None")
|
||
(string-append "ZLIB_ROOT = libinclude(\"" zlib "\")"))
|
||
(("TIFF_ROOT = None")
|
||
(string-append "TIFF_ROOT = libinclude(\"" tiff "\")"))
|
||
(("FREETYPE_ROOT = None")
|
||
(string-append "FREETYPE_ROOT = libinclude(\""
|
||
freetype "\")")))))
|
||
%standard-phases)))
|
||
(home-page "http://www.pythonware.com/products/pil/")
|
||
(synopsis "Python Imaging Library")
|
||
(description "The Python Imaging Library (PIL) adds image processing
|
||
capabilities to the Python interpreter.")
|
||
(license (x11-style
|
||
"file://README"
|
||
"See 'README' in the distribution."))))
|
||
|
||
(define-public python2-cssutils
|
||
(package
|
||
(name "python2-cssutils")
|
||
(version "1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/c/cssutils/cssutils-"
|
||
version
|
||
".zip"))
|
||
(sha256
|
||
(base32
|
||
"1bwim1353r4hqiir73sn4sc43y7ymh09qx0kly7vj048blppc125"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python2-mock" ,python2-mock) ; for the tests
|
||
("unzip" ,unzip))) ; for unpacking the source
|
||
(inputs
|
||
`(("python2-setuptools" ,python2-setuptools)))
|
||
(arguments
|
||
`(#:python ,python-2 ; Otherwise tests fail with a syntax error.
|
||
#:tests? #f ; The tests apparently download an external URL.
|
||
))
|
||
(home-page "http://cthedot.de/cssutils/")
|
||
(synopsis
|
||
"CSS Cascading Style Sheets library for Python")
|
||
(description
|
||
"Cssutils is a Python package for parsing and building CSS
|
||
Cascading Style Sheets. Currently it provides a DOM only and no rendering
|
||
options.")
|
||
(license lgpl3+)))
|
||
|
||
(define-public python-cssselect
|
||
(package
|
||
(name "python-cssselect")
|
||
(version "0.9.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/c/cssselect/cssselect-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"10h623qnp6dp1191jri7lvgmnd4yfkl36k9smqklp1qlf3iafd85"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(arguments
|
||
;; tests fail with message
|
||
;; AttributeError: 'module' object has no attribute 'tests'
|
||
`(#:tests? #f))
|
||
(home-page
|
||
"https://pythonhosted.org/cssselect/")
|
||
(synopsis
|
||
"CSS3 selector parser and translator to XPath 1.0")
|
||
(description
|
||
"Cssselect ia a Python module that parses CSS3 Selectors and translates
|
||
them to XPath 1.0 expressions. Such expressions can be used in lxml or
|
||
another XPath engine to find the matching elements in an XML or HTML document.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-cssselect
|
||
(package-with-python2 python-cssselect))
|
||
|
||
(define-public python-netifaces
|
||
(package
|
||
(name "python-netifaces")
|
||
(version "0.10.4")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/n/netifaces/netifaces-"
|
||
version
|
||
".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1plw237a4zib4z8s62g0mrs8gm3kjfrp5sxh6bbk9nl3rdls2mln"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page
|
||
"https://bitbucket.org/al45tair/netifaces")
|
||
(synopsis
|
||
"Python module for portable network interface information")
|
||
(description
|
||
"Netifaces is a Python module providing information on network
|
||
interfaces in an easy and portable manner.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-netifaces
|
||
(package-with-python2 python-netifaces))
|
||
|
||
(define-public python-networkx
|
||
(package
|
||
(name "python-networkx")
|
||
(version "1.9.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/n/networkx/networkx-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0n8wy0yq1kmdq4wh68mlhwhkndvwzx48lg41a1z0sxxms0wfp033"))))
|
||
(build-system python-build-system)
|
||
;; python-decorator is needed at runtime
|
||
(propagated-inputs
|
||
`(("python-decorator" ,python-decorator)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)
|
||
("python-nose" ,python-nose)))
|
||
(home-page "http://networkx.github.io/")
|
||
(synopsis "Python module for creating and manipulating graphs and networks")
|
||
(description
|
||
"NetworkX is a Python package for the creation, manipulation, and study
|
||
of the structure, dynamics, and functions of complex networks.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-networkx
|
||
(package-with-python2 python-networkx))
|
||
|
||
(define-public snakemake
|
||
(package
|
||
(name "snakemake")
|
||
(version "3.2.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/s/snakemake/snakemake-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0fi4b63sj60hvi7rfydvmz2icl4wj74djw5sn2gl8hxd02qw4b91"))))
|
||
(build-system python-build-system)
|
||
(inputs `(("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://bitbucket.org/johanneskoester/snakemake")
|
||
(synopsis "Python-based execution environment for make-like workflows")
|
||
(description
|
||
"Snakemake aims to reduce the complexity of creating workflows by
|
||
providing a clean and modern domain specific specification language (DSL) in
|
||
Python style, together with a fast and comfortable execution environment.")
|
||
(license license:expat)))
|
||
|
||
(define-public python-seaborn
|
||
(package
|
||
(name "python-seaborn")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/s/seaborn/seaborn-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1236abw18ijjglmv60q85ckqrvgf5qyy4zlq7nz5aqfg6q87z3wc"))))
|
||
(build-system python-build-system)
|
||
(propagated-inputs
|
||
`(("python-pandas" ,python-pandas)
|
||
("python-matplotlib" ,python-matplotlib)
|
||
("python-scipy" ,python-scipy)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://stanford.edu/~mwaskom/software/seaborn/")
|
||
(synopsis "Statistical data visualization")
|
||
(description
|
||
"Seaborn is a library for making attractive and informative statistical
|
||
graphics in Python. It is built on top of matplotlib and tightly integrated
|
||
with the PyData stack, including support for numpy and pandas data structures
|
||
and statistical routines from scipy and statsmodels.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-seaborn
|
||
(let ((seaborn (package-with-python2 python-seaborn)))
|
||
(package (inherit seaborn)
|
||
(propagated-inputs
|
||
`(("python2-pytz" ,python2-pytz)
|
||
,@(package-propagated-inputs seaborn))))))
|
||
|
||
(define-public python-sympy
|
||
(package
|
||
(name "python-sympy")
|
||
(version "0.7.6")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://github.com/sympy/sympy/releases/download/sympy-"
|
||
version "/sympy-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "19yp0gy4i7p4g6l3b8vaqkj9qj7yqb5kqy0qgbdagpzgkdz958yz"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://www.sympy.org/")
|
||
(synopsis "Python library for symbolic mathematics")
|
||
(description
|
||
"SymPy is a Python library for symbolic mathematics. It aims to become a
|
||
full-featured computer algebra system (CAS) while keeping the code as simple
|
||
as possible in order to be comprehensible and easily extensible.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-sympy
|
||
(package-with-python2 python-sympy))
|
||
|
||
(define-public python-testlib
|
||
(package
|
||
(name "python-testlib")
|
||
(version "0.6.5")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/testlib/testlib-"
|
||
version ".zip"))
|
||
(sha256
|
||
(base32 "1mz26cxn4x8bbgv0rn0mvj2z05y31rkc8009nvdlb3lam5b4mj3y"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(native-inputs
|
||
`(("unzip" ,unzip)))
|
||
(arguments
|
||
`(#:phases
|
||
(alist-replace
|
||
'unpack
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(let ((unzip (string-append (assoc-ref inputs "unzip")
|
||
"/bin/unzip"))
|
||
(source (assoc-ref inputs "source")))
|
||
(and (zero? (system* unzip source))
|
||
(chdir (string-append "testlib-" ,version)))))
|
||
%standard-phases)))
|
||
(synopsis "Python micro test suite harness")
|
||
(description "A micro unittest suite harness for Python.")
|
||
(home-page "https://github.com/trentm/testlib")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-testlib
|
||
(package-with-python2 python-testlib))
|
||
|
||
(define-public python2-xlib
|
||
(package
|
||
(name "python2-xlib")
|
||
(version "0.14")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/python-xlib/"
|
||
"python-xlib-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1sv0447j0rx8cgs3jhjl695p5pv13ihglcjlrrz1kq05lsvb0wa7"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2 ;Python 2 only
|
||
#:tests? #f)) ;no tests
|
||
(inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://python-xlib.sourceforge.net/")
|
||
(synopsis "Python X11 client library")
|
||
(description
|
||
"The Python X Library is intended to be a fully functional X client
|
||
library for Python programs. It is useful to implement low-level X clients.
|
||
It is written entirely in Python.")
|
||
(license gpl2+)))
|
||
|
||
(define-public python-singledispatch
|
||
(package
|
||
(name "python-singledispatch")
|
||
(version "3.4.0.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/s/singledispatch/"
|
||
"singledispatch-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"171b7ip0hsq5qm83np40h3phlr36ym18w0lay0a8v08kvy3sy1jv"))))
|
||
(build-system python-build-system)
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(propagated-inputs
|
||
`(("python-six" ,python-six)))
|
||
(home-page
|
||
"http://docs.python.org/3/library/functools.html#functools.singledispatch")
|
||
(synopsis "Backport of singledispatch feature from Python 3.4")
|
||
(description
|
||
"This library brings functools.singledispatch from Python 3.4 to Python
|
||
2.6-3.3.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-singledispatch
|
||
(package-with-python2 python-singledispatch))
|
||
|
||
(define-public python-tornado
|
||
(package
|
||
(name "python-tornado")
|
||
(version "4.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/t/tornado/"
|
||
"tornado-" version ".tar.gz"))
|
||
(sha256
|
||
(base32 "0a12f00h277zbifibnj46wf14801f573irvf6hwkgja5vspd7awr"))))
|
||
(build-system python-build-system)
|
||
(inputs
|
||
`(("python-certifi" ,python-certifi)))
|
||
(native-inputs
|
||
`(("python-setuptools" ,python-setuptools)))
|
||
(home-page "https://pypi.python.org/pypi/tornado/4.1")
|
||
(synopsis "Python web framework and asynchronous networking library")
|
||
(description
|
||
"Tornado is a Python web framework and asynchronous networking library,
|
||
originally developed at FriendFeed. By using non-blocking network I/O,
|
||
Tornado can scale to tens of thousands of open connections, making it ideal
|
||
for long polling, WebSockets, and other applications that require a long-lived
|
||
connection to each user.")
|
||
(license asl2.0)))
|
||
|
||
(define-public python2-tornado
|
||
(let ((tornado (package-with-python2 python-tornado)))
|
||
(package (inherit tornado)
|
||
(inputs
|
||
`(("python2-backport-ssl-match-hostname"
|
||
,python2-backport-ssl-match-hostname)
|
||
,@(package-inputs tornado))))))
|
||
|
||
(define-public python-waf
|
||
(package
|
||
(name "python-waf")
|
||
(version "1.8.8")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://waf.io/"
|
||
"waf-" version ".tar.bz2"))
|
||
(sha256
|
||
(base32
|
||
"0b5q307fgn6a5d8yjia2d1l4bk1q3ilvc0w8k4isfrrx2gbcw8wn"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
'(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'build
|
||
(lambda _
|
||
(zero? (begin
|
||
(system* "python" "waf-light" "configure")
|
||
(system* "python" "waf-light" "build")))))
|
||
(replace 'check
|
||
(lambda _
|
||
(zero? (system* "python" "waf" "--version"))))
|
||
(replace 'install
|
||
(lambda _
|
||
(copy-file "waf" %output))))))
|
||
(home-page "https://waf.io/")
|
||
(synopsis "Python-based build system")
|
||
(description
|
||
"Waf is a Python-based framework for configuring, compiling and installing
|
||
applications.")
|
||
(license bsd-3)))
|
||
|
||
(define-public python2-waf
|
||
(package-with-python2 python-waf))
|
||
|
||
(define-public python-pyzmq
|
||
(package
|
||
(name "python-pyzmq")
|
||
(version "14.6.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://pypi.python.org/packages/source/p/pyzmq/pyzmq-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32 "1frmbjykvhmdg64g7sn20c9fpamrsfxwci1nhhg8q7jgz5pq0ikp"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list (string-append "--zmq=" (assoc-ref %build-inputs "zeromq")))
|
||
;; FIXME: You must build pyzmq with 'python setup.py build_ext
|
||
;; --inplace' for 'python setup.py test' to work.
|
||
#:tests? #f))
|
||
(inputs
|
||
`(("zeromq" ,zeromq)))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)
|
||
("python-nose" ,python-nose)
|
||
("python-setuptools" ,python-setuptools)))
|
||
(home-page "http://github.com/zeromq/pyzmq")
|
||
(synopsis "Python bindings for 0MQ")
|
||
(description
|
||
"PyZMQ is the official Python binding for the ZeroMQ messaging library.")
|
||
(license bsd-4)))
|
||
|
||
(define-public python2-pyzmq
|
||
(package-with-python2 python-pyzmq))
|