(use-modules ((guix licenses) #:prefix license:)) (use-modules (guix packages)) (use-modules (guix download)) (use-modules (guix utils)) (use-modules (guix git-download)) (use-modules (guix build-system gnu)) (use-modules (gnu packages)) (use-modules (gnu packages algebra)) (use-modules (gnu packages base)) (use-modules (gnu packages compression)) (use-modules (gnu packages elf)) (use-modules (gnu packages gcc)) (use-modules (gnu packages llvm)) (use-modules (gnu packages libevent)) (use-modules (gnu packages libunwind)) (use-modules (gnu packages maths)) (use-modules (gnu packages multiprecision)) ; mpfr) (use-modules (gnu packages pcre)) (use-modules (gnu packages perl)) (use-modules (gnu packages pkg-config)) (use-modules (gnu packages python)) (use-modules (gnu packages python-xyz)) (use-modules (gnu packages textutils)) (use-modules (gnu packages tls)) (use-modules (gnu packages version-control)) (use-modules (gnu packages wget)) (use-modules (ice-9 match)) ;; (define openblas-julia ;; (package ;; (inherit openblas) ;; (name "openblas-julia") ;; INTERFACE64= ;; )) ;; This works *BUT* we need to apply a lot of patches. Compiling this ;; with julia applies the patches automatically (define llvm-julia (package (inherit llvm-6) (name "llvm-julia") (source (origin (method url-fetch) (uri (string-append "http://releases.llvm.org/6.0.1/llvm-6.0.1.src.tar.xz")) (sha256 (base32 "1qpls3vk85lydi5b4axl0809fv932qgsqgdgrk098567z4jc7mmn")) (patches '("./llvm-6.0-D44650.patch" "./llvm-6.0-DISABLE_ABI_CHECKS.patch" "./llvm-6.0-NVPTX-addrspaces.patch" "./llvm-6.0.0_D27296-libssp.patch" "./llvm-D27629-AArch64-large_model_6.0.1.patch" "./llvm-D34078-vectorize-fdiv.patch" "./llvm-D42262-jumpthreading-not-i1.patch" "./llvm-D44892-Perf-integration.patch" "./llvm-D46460.patch" "./llvm-D49832-SCEVPred.patch" "./llvm-D50010-VNCoercion-ni.patch" "./llvm-D50167-scev-umin.patch" "./llvm-OProfile-line-num.patch" "./llvm-PPC-addrspaces.patch" "./llvm-rL323946-LSRTy.patch" "./llvm-rL326967-aligned-load.patch" "./llvm-rL327898.patch" )) )) (arguments (substitute-keyword-arguments (package-arguments llvm-6) ((#:configure-flags flags) '(list ;; Taken from NixOS. Only way I could get libLLVM-6.0.so "-DCMAKE_BUILD_TYPE=Release" "-DLLVM_INSTALL_UTILS=ON" "-DLLVM_BUILD_TESTS=ON" "-DLLVM_ENABLE_FFI=ON" "-DLLVM_ENABLE_RTTI=ON" ;; "-DLLVM_HOST_TRIPLE=${stdenv.hostPlatform.config}" ;; "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}" "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=WebAssembly" "-DLLVM_ENABLE_DUMP=ON" "-DLLVM_LINK_LLVM_DYLIB=ON") ))))) (define libuv-julia (let ((commit "2348256acf5759a544e5ca7935f638d2bc091d60")) (package (inherit libuv) (name "libuv-julia") (version commit) (source (origin (method url-fetch) (uri (string-append "https://api.github.com/repos/JuliaLang/libuv/tarball/" commit)) (sha256 (base32 "1363f4vqayfcv5zqg07qmzjff56yhad74k16c22ian45lram8mv8")))) (build-system gnu-build-system) (arguments (substitute-keyword-arguments (package-arguments libuv) ((#:phases phases) `(modify-phases ,phases (delete 'autogen))))) (home-page "https://github.com/JuliaLang/libuv")))) (package (name "julia") (version "1.1.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/JuliaLang/julia/releases/download/v" version "/julia-" version ".tar.gz")) (sha256 (base32 "1bd6c5gqd7f2i837ay8iqi8h36smhcg0lq7f8c2axxaw8x6rcfmx")))) (build-system gnu-build-system) (arguments `(#:test-target "test" #:modules ((ice-9 match) (guix build gnu-build-system) (guix build utils)) ;; Do not strip binaries to keep support for full backtraces. ;; See https://github.com/JuliaLang/julia/issues/17831 #:strip-binaries? #f ;; The DSOs use $ORIGIN to refer to each other, but (guix build ;; gremlin) doesn't support it yet, so skip this phase. #:validate-runpath? #f #:phases (modify-phases %standard-phases (delete 'configure) (add-after 'unpack 'prepare-deps (lambda* (#:key inputs #:allow-other-keys) (mkdir "deps/srccache") (copy-file (assoc-ref inputs "dsfmt") "deps/srccache/dsfmt-2.2.3.tar.gz") (copy-file (string-append (assoc-ref inputs "virtualenv") "/bin/virtualenv") "julia-env") (copy-file (assoc-ref inputs "libwhich") (string-append "deps/srccache/libwhich-" "81e9723c0273d78493dc8c8ed570f68d9ce7e89e" ".tar.gz")) (copy-file (assoc-ref inputs "rmath") "deps/srccache/Rmath-julia-0.1.tar.gz") (copy-file (assoc-ref inputs "objconv") "deps/srccache/objconv.zip") (copy-file (assoc-ref inputs "suitesparse") "deps/srccache/SuiteSparse-4.4.5.tar.gz") ;; needed by libwhich (setenv "LD_LIBRARY_PATH" (string-join (map (lambda (pkg) (string-append (assoc-ref inputs pkg) "/lib")) (list "arpack-ng" "fftw" "gmp" "lapack" "libgit2" "mpfr" "openblas" "openlibm" "openspecfun" "pcre2" )) ":")) ;; (copy-file ;; (assoc-ref inputs "llvm") ;; "deps/srccache/llvm-6.0.0.src.tar.xz") #t)) ;; FIXME: Building the documentation requires Julia packages that ;; would be downloaded from the Internet. We should build them in a ;; separate build phase. (add-after 'unpack 'disable-documentation (lambda _ (substitute* "Makefile" (("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line) (string-append line "\n")) (("src ui doc deps") "src ui deps")) #t)) (add-before 'check 'set-home ;; Some tests require a home directory to be set. (lambda _ (setenv "HOME" "/tmp") #t)) (add-after 'unpack 'hardcode-soname-map ;; ./src/runtime_ccall.cpp creates a map from library names to paths ;; using the output of "/sbin/ldconfig -p". Since ldconfig is not ;; used in Guix, we patch runtime_ccall.cpp to contain a static map. (lambda* (#:key inputs #:allow-other-keys) (use-modules (ice-9 match)) (substitute* "src/runtime_ccall.cpp" ;; Patch out invocations of '/sbin/ldconfig' to avoid getting ;; error messages about missing '/sbin/ldconfig' on Guix System. (("popen\\(.*ldconfig.*\\);") "NULL;\n") ;; Populate 'sonameMap'. (("jl_read_sonames.*;") (string-join (map (match-lambda ((input libname soname) (string-append "sonameMap[\"" libname "\"] = " "\"" (assoc-ref inputs input) "/lib/" soname "\";"))) '(("libc" "libc" "libc.so.6") ("pcre2" "libpcre2-8" "libpcre2-8.so") ("mpfr" "libmpfr" "libmpfr.so") ("openblas" "libblas" "libopenblas.so") ("arpack-ng" "libarpack" "libarpack.so") ("lapack" "liblapack" "liblapack.so") ("libgit2" "libgit2" "libgit2.so") ("gmp" "libgmp" "libgmp.so") ;; ("openlibm" "libopenlibm" "libopenlibm.so") ("openspecfun" "libopenspecfun" "libopenspecfun.so") ("fftw" "libfftw3" "libfftw3_threads.so") ("fftwf" "libfftw3f" "libfftw3f_threads.so")))))) ;; FIXME: NIXO ;; (substitute* "base/fft/FFTW.jl" ;; (("const libfftw = Base.libfftw_name") ;; (string-append "const libfftw = \"" ;; (assoc-ref inputs "fftw") "/lib/libfftw3_threads.so" ;; "\"")) ;; (("const libfftwf = Base.libfftwf_name") ;; (string-append "const libfftwf = \"" ;; (assoc-ref inputs "fftwf") "/lib/libfftw3f_threads.so" ;; "\""))) (substitute* "base/math.jl" (("const libm = Base.libm_name") (string-append "const libm = \"" (assoc-ref inputs "openlibm") "/lib/libopenlibm.so" "\"")) (("const openspecfun = \"libopenspecfun\"") (string-append "const openspecfun = \"" (assoc-ref inputs "openspecfun") "/lib/libopenspecfun.so" "\""))) ;; (substitute* "base/pcre.jl" ;; (("const PCRE_LIB = \"libpcre2-8\"") ;; (string-append "const PCRE_LIB = \"" ;; (assoc-ref inputs "pcre2") ;; "/lib/libpcre2-8.so" "\""))) #t)) (add-before 'build 'fix-include-and-link-paths (lambda* (#:key inputs #:allow-other-keys) ;; LIBUTF8PROC is a linker flag, not a build target. It is ;; included in the LIBFILES_* variable which is used as a ;; collection of build targets and a list of libraries to link ;; against. (substitute* "src/flisp/Makefile" (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)") "$(BUILDDIR)/$(EXENAME): $(OBJS) $(LLT_release)") (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug: \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)") "$(BUILDDIR)/$(EXENAME)-debug: $(DOBJS) $(LLT_debug)")) ;; The REPL must be linked with libuv. (substitute* "ui/Makefile" (("JLDFLAGS \\+= ") (string-append "JLDFLAGS += " (assoc-ref %build-inputs "libuv") "/lib/libuv.so "))) (substitute* "base/Makefile" (("\\$\\(build_includedir\\)/uv/errno.h") (string-append (assoc-ref inputs "libuv") "/include/uv/errno.h"))) #t)) (add-before 'build 'replace-default-shell (lambda _ (substitute* "base/client.jl" (("/bin/sh") (which "sh"))) #t)) (add-after 'unpack 'hardcode-paths (lambda _ (substitute* "stdlib/InteractiveUtils/src/InteractiveUtils.jl" (("`which") (string-append "`" (which "which"))) (("`wget") (string-append "`" (which "wget")))) #t)) (add-before 'check 'disable-broken-tests (lambda _ (define (touch file-name) (call-with-output-file file-name (const #t))) ;; Don't know why FIXME ;; (substitute* "stdlib/LibGit2/test/libgit2.jl" ;; (("!LibGit2.use_http_path(cfg, github_cred)") ;; "true") ;; (("LibGit2.use_http_path(cfg, mygit_cred)") ;; "true")) (map (lambda (test) (delete-file test) (touch test)) '("stdlib/Sockets/test/runtests.jl" "stdlib/Distributed/test/runtests.jl" "stdlib/LibGit2/test/libgit2.jl" )) (substitute* "test/choosetests.jl" ;; These tests fail, probably because some of the input ;; binaries have been stripped and thus backtraces don't look ;; as expected. (("\"backtrace\",") "") (("\"cmdlineargs\",") "")) #t))) #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")) (string-append "PREFIX=" (assoc-ref %outputs "out")) ;; Passing the MARCH flag is necessary to build binary substitutes for ;; the supported architectures. ,(match (or (%current-target-system) (%current-system)) ("x86_64-linux" "MARCH=x86-64") ("i686-linux" "MARCH=pentium4") ("aarch64-linux" "MARCH=armv8-a") ;; Prevent errors when querying this package on unsupported ;; platforms, e.g. when running "guix package --search=" (_ "MARCH=UNSUPPORTED")) "CONFIG_SHELL=bash" ;needed to build bundled libraries "USE_SYSTEM_DSFMT=0" ;not packaged for Guix and upstream has no ;build system for a shared library. "USE_SYSTEM_LAPACK=1" "USE_SYSTEM_BLAS=1" ;; TODO: What about building blas with 64 support? "USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1 "LIBBLAS=-lopenblas" "LIBBLASNAME=libopenblas" "USE_SYSTEM_FFTW=1" "LIBFFTWNAME=libfftw3" "LIBFFTWFNAME=libfftw3f" ;; TODO: Suitesparse does not install shared libraries, so we cannot ;; use the suitesparse package. ;; "USE_SYSTEM_SUITESPARSE=1" ;; (string-append "SUITESPARSE_INC=-I " ;; (assoc-ref %build-inputs "suitesparse") ;; "/include") "USE_GPL_LIBS=1" ;proudly "USE_SYSTEM_UTF8PROC=1" (string-append "UTF8PROC_INC=" (assoc-ref %build-inputs "utf8proc") "/include") "USE_SYSTEM_LLVM=1" "LLVM_VER=6.0.1" ;; "LLVM_VER=6.0.0" "USE_LLVM_SHLIB=1" ; FIXME: fails when set to 1 "USE_SYSTEM_LIBUNWIND=1" "USE_SYSTEM_LIBUV=1" (string-append "LIBUV=" (assoc-ref %build-inputs "libuv") "/lib/libuv.so") (string-append "LIBUV_INC=" (assoc-ref %build-inputs "libuv") "/include") "USE_SYSTEM_PATCHELF=1" "USE_SYSTEM_PCRE=1" "USE_SYSTEM_OPENLIBM=1" "USE_SYSTEM_GMP=1" "USE_SYSTEM_MPFR=1" "USE_SYSTEM_ARPACK=1" "USE_SYSTEM_LIBGIT2=1" "USE_SYSTEM_ZLIB=1" "USE_SYSTEM_OPENSPECFUN=1"))) (inputs `( ("llvm" ,llvm-julia) ;; The bundled version is 3.3.0 so stick to that version. With other ;; versions, we get test failures in 'linalg/arnoldi' as described in ;; . ("arpack-ng" ,arpack-ng-3.3.0) ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like ("lapack" ,lapack) ("openblas" ,openblas) ;Julia does not build with Atlas ("libunwind" ,libunwind) ("openlibm" ,openlibm) ("openspecfun" ,openspecfun) ("libuv", libuv-julia) ("libgit2" ,libgit2) ("fftw" ,fftw) ("fftwf" ,fftwf) ("fortran" ,gfortran) ("pcre2" ,pcre2) ("utf8proc" ,utf8proc) ("mpfr" ,mpfr) ("wget" ,wget) ("which" ,which) ("zlib" ,zlib) ("gmp" ,gmp) ("virtualenv" ,python2-virtualenv) ;; FIXME: The following inputs are downloaded from upstream to allow us ;; to use the lightweight Julia release tarball. Ideally, these inputs ;; would eventually be replaced with proper Guix packages. ;; TODO: run "make -f contrib/repackage_system_suitesparse4.make" to copy static lib ("rmath" ,(origin (method url-fetch) (uri "https://api.github.com/repos/JuliaLang/Rmath-julia/tarball/v0.1") (sha256 (base32 "1qyps217175qhid46l8f5i1v8i82slgp23ia63x2hzxwfmx8617p")))) ("suitesparse" ,(origin (method url-fetch) (uri "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.5.tar.gz") (sha256 (base32 "1jcbxb8jx5wlcixzf6n5dca2rcfx6mlcms1k2rl5gp67ay3bix43")))) ("objconv" ,(origin (method url-fetch) ;; No versioned URL, see for updates. (uri "https://www.agner.org/optimize/objconv.zip") (file-name "objconv-2018-10-07.zip") (sha256 (base32 "0wp6ld9vk11f4nnkn56627zmlv9k5vafi99qa3yyn1pgcd61zcfs")))) ("libwhich" ,(origin (method url-fetch) (uri (string-append "https://api.github.com/repos/vtjnash/libwhich/tarball/" "81e9723c0273d78493dc8c8ed570f68d9ce7e89e")) (sha256 (base32 "1p7zg31kpmpbmh1znrk1xrbd074agx13b9q4dcw8n2zrwwdlbz3b")))) ;; ("llvm" ;; ,(origin ;; (method url-fetch) ;; (uri ;; (string-append ;; "http://releases.llvm.org/6.0.0/llvm-6.0.0.src.tar.xz")) ;; (sha256 ;; (base32 ;; "0224xvfg6h40y5lrbnb9qaq3grmdc5rg00xq03s1wxjfbf8krx8z")))) ;; ("cmake" ,cmake) ;; required to build llvm ("dsfmt" ,(origin (method url-fetch) (uri (string-append "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/" "SFMT/dSFMT-src-2.2.3.tar.gz")) (sha256 (base32 "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42")))))) (native-inputs `(("openssl" ,openssl) ("perl" ,perl) ("patchelf" ,patchelf) ("pkg-config" ,pkg-config) ("python" ,python-2))) ;; Julia is not officially released for ARM and MIPS. ;; See https://github.com/JuliaLang/julia/issues/10639 (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux")) (home-page "https://julialang.org/") (synopsis "High-performance dynamic language for technical computing") (description "Julia is a high-level, high-performance dynamic programming language for technical computing, with syntax that is familiar to users of other technical computing environments. It provides a sophisticated compiler, distributed parallel execution, numerical accuracy, and an extensive mathematical function library.") (license license:expat))