gnu: Add r-absfiltergsea.

* gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.
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pimi 2018-10-02 16:23:12 -04:00 committed by Leo Famulari
parent 1ddb2b5c1c
commit 0f1622220a
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@ -13938,3 +13938,30 @@ generated by nanopore sequencing devices for the purposes of quality control and
downstream analysis. Poretools operates directly on the native FAST5, a variant
of the Hierarchical Data Format (HDF5) standard.")
(license license:expat))))
(define-public r-absfiltergsea
(package
(name "r-absfiltergsea")
(version "1.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "AbsFilterGSEA" version))
(sha256
(base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
(properties `((upstream-name . "AbsFilterGSEA")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-deseq" ,r-deseq)
("r-limma" ,r-limma)
("r-rcpp" ,r-rcpp)
("r-rcpparmadillo" ,r-rcpparmadillo)))
(home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
(synopsis "Improved false positive control of gene-permuting with absolute filtering")
(description
"This package provides a function that performs gene-permuting of a gene-set
enrichment analysis (GSEA) calculation with or without the absolute filtering.
Without filtering, users can perform (original) two-tailed or one-tailed
absolute GSEA.")
(license license:gpl2)))