gnu: Add python-loompy.

* gnu/packages/bioinformatics.scm (python-loompy): New variable.
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Ricardo Wurmus 2018-02-14 14:28:00 +01:00 committed by Ricardo Wurmus
parent 3082de04c2
commit 152d30c346
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@ -11857,3 +11857,31 @@ use of lightweight alignments (accurate but fast-to-compute proxies for
traditional read alignments) and massively-parallel stochastic collapsed
variational inference.")
(license license:gpl3+)))
(define-public python-loompy
(package
(name "python-loompy")
(version "2.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "loompy" version))
(sha256
(base32
"1drgv8j1hxqzzpnfg272x9djb6j8qr798w1pc2x8ikmfgyd9gh51"))))
(build-system python-build-system)
;; There are no tests
(arguments '(#:tests? #f))
(propagated-inputs
`(("python-h5py" ,python-h5py)
("python-numpy" ,python-numpy)
("python-scipy" ,python-scipy)
("python-typing" ,python-typing)))
(home-page "https://github.com/linnarsson-lab/loompy")
(synopsis "Work with .loom files for single-cell RNA-seq data")
(description "The loom file format is an efficient format for very large
omics datasets, consisting of a main matrix, optional additional layers, a
variable number of row and column annotations. Loom also supports sparse
graphs. This library makes it easy to work with @file{.loom} files for
single-cell RNA-seq data.")
(license license:bsd-3)))