gnu: Add r-dropbead.

* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
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Ricardo Wurmus 2018-02-14 14:27:50 +01:00 committed by Ricardo Wurmus
parent 05f7296012
commit 3082de04c2
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1 changed files with 29 additions and 0 deletions

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@ -10658,6 +10658,35 @@ are optimized per data type and for subsetted calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
(define-public r-dropbead
(let ((commit "cf0be5ae5302684bd03e78ab65b142900bbbb840")
(revision "1"))
(package
(name "r-dropbead")
(version (string-append "0-" revision "." (string-take commit 7)))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/rajewsky-lab/dropbead.git")
(commit commit)))
(sha256
(base32
"1b2lphsc236s1rdzlijxg8yl1jnqpwcvj4x938r89rqpj93jb780"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-gridextra" ,r-gridextra)
("r-gplots" ,r-gplots)
("r-plyr" ,r-plyr)))
(home-page "https://github.com/rajewsky-lab/dropbead")
(synopsis "Basic exploration and analysis of Drop-seq data")
(description "This package offers a quick and straight-forward way to
explore and perform basic analysis of single cell sequencing data coming from
droplet sequencing. It has been particularly tailored for Drop-seq.")
(license license:gpl3))))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package