gnu: Add python-loompy.
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
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@ -11857,3 +11857,31 @@ use of lightweight alignments (accurate but fast-to-compute proxies for
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traditional read alignments) and massively-parallel stochastic collapsed
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variational inference.")
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(license license:gpl3+)))
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(define-public python-loompy
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(package
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(name "python-loompy")
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(version "2.0.2")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "loompy" version))
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(sha256
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(base32
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"1drgv8j1hxqzzpnfg272x9djb6j8qr798w1pc2x8ikmfgyd9gh51"))))
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(build-system python-build-system)
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;; There are no tests
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(arguments '(#:tests? #f))
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(propagated-inputs
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`(("python-h5py" ,python-h5py)
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("python-numpy" ,python-numpy)
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("python-scipy" ,python-scipy)
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("python-typing" ,python-typing)))
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(home-page "https://github.com/linnarsson-lab/loompy")
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(synopsis "Work with .loom files for single-cell RNA-seq data")
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(description "The loom file format is an efficient format for very large
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omics datasets, consisting of a main matrix, optional additional layers, a
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variable number of row and column annotations. Loom also supports sparse
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graphs. This library makes it easy to work with @file{.loom} files for
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single-cell RNA-seq data.")
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(license license:bsd-3)))
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