gnu: Add r-qvalue.

* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
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Ricardo Wurmus 2017-08-15 15:13:53 +02:00
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commit 212f612040
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@ -9319,6 +9319,35 @@ formats can be used as input to fastseg like expression set objects for
microarrays or GRanges for sequencing data.") microarrays or GRanges for sequencing data.")
(license license:lgpl2.0+))) (license license:lgpl2.0+)))
(define-public r-qvalue
(package
(name "r-qvalue")
(version "2.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "qvalue" version))
(sha256
(base32
"1dxdwa767a9r8n61r272ypi09qblcdfpzzwkmri74y5mbp1r3y4i"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-reshape2" ,r-reshape2)))
(home-page "http://github.com/jdstorey/qvalue")
(synopsis "Q-value estimation for false discovery rate control")
(description
"This package takes a list of p-values resulting from the simultaneous
testing of many hypotheses and estimates their q-values and local @dfn{false
discovery rate} (FDR) values. The q-value of a test measures the proportion
of false positives incurred when that particular test is called significant.
The local FDR measures the posterior probability the null hypothesis is true
given the test's p-value. Various plots are automatically generated, allowing
one to make sensible significance cut-offs. The software can be applied to
problems in genomics, brain imaging, astrophysics, and data mining.")
;; Any version of the LGPL.
(license license:lgpl3+)))
(define htslib-for-sambamba (define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package (package