gnu: Add r-qvalue.
* gnu/packages/bioinformatics.scm (r-qvalue): New variable.
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@ -9319,6 +9319,35 @@ formats can be used as input to fastseg like expression set objects for
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microarrays or GRanges for sequencing data.")
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microarrays or GRanges for sequencing data.")
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(license license:lgpl2.0+)))
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(license license:lgpl2.0+)))
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(define-public r-qvalue
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(package
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(name "r-qvalue")
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(version "2.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "qvalue" version))
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(sha256
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(base32
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"1dxdwa767a9r8n61r272ypi09qblcdfpzzwkmri74y5mbp1r3y4i"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-ggplot2" ,r-ggplot2)
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("r-reshape2" ,r-reshape2)))
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(home-page "http://github.com/jdstorey/qvalue")
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(synopsis "Q-value estimation for false discovery rate control")
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(description
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"This package takes a list of p-values resulting from the simultaneous
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testing of many hypotheses and estimates their q-values and local @dfn{false
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discovery rate} (FDR) values. The q-value of a test measures the proportion
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of false positives incurred when that particular test is called significant.
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The local FDR measures the posterior probability the null hypothesis is true
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given the test's p-value. Various plots are automatically generated, allowing
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one to make sensible significance cut-offs. The software can be applied to
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problems in genomics, brain imaging, astrophysics, and data mining.")
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;; Any version of the LGPL.
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(license license:lgpl3+)))
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(define htslib-for-sambamba
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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(package
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