gnu: Add r-edaseq.
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
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@ -9052,6 +9052,44 @@ differential expression based on a model using the negative binomial
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distribution.")
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(license license:gpl3+)))
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(define-public r-edaseq
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(package
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(name "r-edaseq")
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(version "2.10.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "EDASeq" version))
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(sha256
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(base32
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"0f25dfc8hdii9fjm3bf89vy9jkxv23sa62fkcga5b4gkipwrvm9a"))))
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(properties `((upstream-name . "EDASeq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-aroma-light" ,r-aroma-light)
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("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-biomart" ,r-biomart)
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("r-biostrings" ,r-biostrings)
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("r-deseq" ,r-deseq)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rsamtools" ,r-rsamtools)
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("r-shortread" ,r-shortread)))
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(home-page "https://github.com/drisso/EDASeq")
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(synopsis "Exploratory data analysis and normalization for RNA-Seq")
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(description
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"This package provides support for numerical and graphical summaries of
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RNA-Seq genomic read data. Provided within-lane normalization procedures to
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adjust for GC-content effect (or other gene-level effects) on read counts:
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loess robust local regression, global-scaling, and full-quantile
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normalization. Between-lane normalization procedures to adjust for
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distributional differences between lanes (e.g., sequencing depth):
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global-scaling and full-quantile normalization.")
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(license license:artistic2.0)))
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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