gnu: Add r-edaseq.

* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
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Ricardo Wurmus 2017-05-17 16:38:17 +02:00
parent 7b46532779
commit 296b3c631c
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@ -9052,6 +9052,44 @@ differential expression based on a model using the negative binomial
distribution.")
(license license:gpl3+)))
(define-public r-edaseq
(package
(name "r-edaseq")
(version "2.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "EDASeq" version))
(sha256
(base32
"0f25dfc8hdii9fjm3bf89vy9jkxv23sa62fkcga5b4gkipwrvm9a"))))
(properties `((upstream-name . "EDASeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-aroma-light" ,r-aroma-light)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-deseq" ,r-deseq)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-shortread" ,r-shortread)))
(home-page "https://github.com/drisso/EDASeq")
(synopsis "Exploratory data analysis and normalization for RNA-Seq")
(description
"This package provides support for numerical and graphical summaries of
RNA-Seq genomic read data. Provided within-lane normalization procedures to
adjust for GC-content effect (or other gene-level effects) on read counts:
loess robust local regression, global-scaling, and full-quantile
normalization. Between-lane normalization procedures to adjust for
distributional differences between lanes (e.g., sequencing depth):
global-scaling and full-quantile normalization.")
(license license:artistic2.0)))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package