gnu: Add r-deseq.
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
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@ -9021,6 +9021,37 @@ standalone, be utilized in other packages, or be wrapped up in higher-level
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classes.")
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(license license:gpl2+)))
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(define-public r-deseq
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(package
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(name "r-deseq")
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(version "1.28.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "DESeq" version))
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(sha256
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(base32
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"0j3dgcxd64m9qknmlcbdzvg4xhp981xd6nbwsvnqjfn6yypslgyw"))))
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(properties `((upstream-name . "DESeq")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biocgenerics" ,r-biocgenerics)
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("r-genefilter" ,r-genefilter)
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("r-geneplotter" ,r-geneplotter)
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("r-lattice" ,r-lattice)
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("r-locfit" ,r-locfit)
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("r-mass" ,r-mass)
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("r-rcolorbrewer" ,r-rcolorbrewer)))
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(home-page "http://www-huber.embl.de/users/anders/DESeq")
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(synopsis "Differential gene expression analysis")
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(description
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"This package provides tools for estimating variance-mean dependence in
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count data from high-throughput genetic sequencing assays and for testing for
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differential expression based on a model using the negative binomial
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distribution.")
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(license license:gpl3+)))
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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