gnu: Add r-deseq.

* gnu/packages/bioinformatics.scm (r-deseq): New variable.
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Ricardo Wurmus 2017-05-17 16:36:57 +02:00
parent d4b83651d1
commit 7b46532779
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@ -9021,6 +9021,37 @@ standalone, be utilized in other packages, or be wrapped up in higher-level
classes.")
(license license:gpl2+)))
(define-public r-deseq
(package
(name "r-deseq")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DESeq" version))
(sha256
(base32
"0j3dgcxd64m9qknmlcbdzvg4xhp981xd6nbwsvnqjfn6yypslgyw"))))
(properties `((upstream-name . "DESeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-lattice" ,r-lattice)
("r-locfit" ,r-locfit)
("r-mass" ,r-mass)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "http://www-huber.embl.de/users/anders/DESeq")
(synopsis "Differential gene expression analysis")
(description
"This package provides tools for estimating variance-mean dependence in
count data from high-throughput genetic sequencing assays and for testing for
differential expression based on a model using the negative binomial
distribution.")
(license license:gpl3+)))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package