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gnu: pigx-chipseq: Update to 0.0.10. 

* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
This commit is contained in:
Ricardo Wurmus 2018-03-21 11:52:56 +01:00
parent 0def912088
commit 363ee7a3f4
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GPG Key ID: 197A5888235FACAC
1 changed files with 13 additions and 5 deletions
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gnu/packages/bioinformatics.scm
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@ -12747,7 +12747,7 @@ expression report comparing samples in an easily configurable manner.")
(define-public pigx-chipseq (define-public pigx-chipseq
(package (package
(name "pigx-chipseq") (name "pigx-chipseq")
(version "0.0.9") (version "0.0.10")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/" (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@ -12755,7 +12755,7 @@ expression report comparing samples in an easily configurable manner.")
"/pigx_chipseq-" version ".tar.gz")) "/pigx_chipseq-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"14ym5fmc16xil584jlhf66ldq38smb6jbcfwnjvqmi7v0vzybdsw")))) "13w99bkr0w4j28ms0yzpl1x6fkpdqay0vh495q3x20bcilsjwnf1"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:tests? #f ; parts of the tests rely on access to the network `(#:tests? #f ; parts of the tests rely on access to the network
@ -12774,22 +12774,30 @@ expression report comparing samples in an easily configurable manner.")
("coreutils" ,coreutils) ("coreutils" ,coreutils)
("r-minimal" ,r-minimal) ("r-minimal" ,r-minimal)
("r-argparser" ,r-argparser) ("r-argparser" ,r-argparser)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-chipseq" ,r-chipseq) ("r-chipseq" ,r-chipseq)
("r-data-table" ,r-data-table) ("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-genomation" ,r-genomation) ("r-genomation" ,r-genomation)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges) ("r-genomicranges" ,r-genomicranges)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer) ("r-rtracklayer" ,r-rtracklayer)
("r-rcas" ,r-rcas) ("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr) ("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-jsonlite" ,r-jsonlite) ("r-jsonlite" ,r-jsonlite)
("r-heatmaply" ,r-heatmaply) ("r-heatmaply" ,r-heatmaply)
("r-htmlwidgets" ,r-htmlwidgets)
("r-ggplot2" ,r-ggplot2) ("r-ggplot2" ,r-ggplot2)
("r-plotly" ,r-plotly) ("r-plotly" ,r-plotly)
("r-rmarkdown" ,r-rmarkdown)
("python-wrapper" ,python-wrapper) ("python-wrapper" ,python-wrapper)
("python-magic" ,python-magic)
("python-pyyaml" ,python-pyyaml) ("python-pyyaml" ,python-pyyaml)
("python-magic" ,python-magic)
("python-xlrd" ,python-xlrd) ("python-xlrd" ,python-xlrd)
("snakemake" ,snakemake)
("trim-galore" ,trim-galore) ("trim-galore" ,trim-galore)
("macs" ,macs) ("macs" ,macs)
("multiqc" ,multiqc) ("multiqc" ,multiqc)