gnu: Add r-singlecellexperiment.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
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@ -10511,6 +10511,33 @@ variety of commonly used matrix types, including sparse and HDF5-backed
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matrices.")
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matrices.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-singlecellexperiment
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(package
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(name "r-singlecellexperiment")
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(version "1.0.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "SingleCellExperiment" version))
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(sha256
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(base32
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"1r276i97w64a5vdlg6952gkj7bls909p42zl8fn8yz87cdwyaars"))))
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(properties
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`((upstream-name . "SingleCellExperiment")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-s4vectors" ,r-s4vectors)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(home-page "https://bioconductor.org/packages/SingleCellExperiment")
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(synopsis "S4 classes for single cell data")
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(description "This package defines an S4 class for storing data from
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single-cell experiments. This includes specialized methods to store and
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retrieve spike-in information, dimensionality reduction coordinates and size
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factors for each cell, along with the usual metadata for genes and
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libraries.")
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(license license:gpl3)))
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(define htslib-for-sambamba
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(define htslib-for-sambamba
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
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(package
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(package
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