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gnu: r-scran: Update to 1.10.1. 

* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.1.
[propagated-inputs]: Add r-biocneighbors; remove r-dt, r-fnn, r-ggplot2,
r-shiny, and r-viridis.
This commit is contained in:
Ricardo Wurmus 2018-11-07 12:20:03 +01:00
parent 48f2791496
commit 70a3a76ba7
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1 changed files with 4 additions and 8 deletions
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gnu/packages/bioinformatics.scm
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@ -10995,26 +10995,24 @@ quality control.")
(define-public r-scran (define-public r-scran
(package (package
(name "r-scran") (name "r-scran")
(version "1.8.4") (version "1.10.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "scran" version)) (uri (bioconductor-uri "scran" version))
(sha256 (sha256
(base32 (base32
"17vq9vb9ak7n4mcqpwnm9x3z91vmr7xnsgj8f45b8dbj7m0v126j")))) "1viyzrwfm9vccsf54c6g7k1dn7skkfx4ml1jy12q67wa20sx8l03"))))
(build-system r-build-system) (build-system r-build-system)
(propagated-inputs (propagated-inputs
`(("r-beachmat" ,r-beachmat) `(("r-beachmat" ,r-beachmat)
("r-biocgenerics" ,r-biocgenerics) ("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel) ("r-biocparallel" ,r-biocparallel)
("r-delayedarray" ,r-delayedarray) ("r-delayedarray" ,r-delayedarray)
("r-delayedmatrixstats" ,r-delayedmatrixstats) ("r-delayedmatrixstats" ,r-delayedmatrixstats)
("r-dt" ,r-dt)
("r-dynamictreecut" ,r-dynamictreecut) ("r-dynamictreecut" ,r-dynamictreecut)
("r-edger" ,r-edger) ("r-edger" ,r-edger)
("r-fnn" ,r-fnn)
("r-ggplot2" ,r-ggplot2)
("r-igraph" ,r-igraph) ("r-igraph" ,r-igraph)
("r-limma" ,r-limma) ("r-limma" ,r-limma)
("r-matrix" ,r-matrix) ("r-matrix" ,r-matrix)
@ -11022,11 +11020,9 @@ quality control.")
("r-rhdf5lib" ,r-rhdf5lib) ("r-rhdf5lib" ,r-rhdf5lib)
("r-s4vectors" ,r-s4vectors) ("r-s4vectors" ,r-s4vectors)
("r-scater" ,r-scater) ("r-scater" ,r-scater)
("r-shiny" ,r-shiny)
("r-singlecellexperiment" ,r-singlecellexperiment) ("r-singlecellexperiment" ,r-singlecellexperiment)
("r-statmod" ,r-statmod) ("r-statmod" ,r-statmod)
("r-summarizedexperiment" ,r-summarizedexperiment) ("r-summarizedexperiment" ,r-summarizedexperiment)))
("r-viridis" ,r-viridis)))
(home-page "https://bioconductor.org/packages/scran") (home-page "https://bioconductor.org/packages/scran")
(synopsis "Methods for single-cell RNA-Seq data analysis") (synopsis "Methods for single-cell RNA-Seq data analysis")
(description "This package implements a variety of low-level analyses of (description "This package implements a variety of low-level analyses of