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Merge branch 'master' into staging

master
Marius Bakke 2019-03-10 18:38:25 +01:00
parent 2b0c755d19 41ce92501b
commit 8c5533b582
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70 changed files with 7610 additions and 1730 deletions
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1
.dir-locals.el
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@ -79,6 +79,7 @@
(eval . (put 'with-extensions 'scheme-indent-function 1))
(eval . (put 'with-database 'scheme-indent-function 2))
(eval . (put 'call-with-transaction 'scheme-indent-function 2))
(eval . (put 'call-with-container 'scheme-indent-function 1))
(eval . (put 'container-excursion 'scheme-indent-function 1))

11
Makefile.am
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@ -3,7 +3,7 @@
# Copyright © 2013 Andreas Enge <andreas@enge.fr>
# Copyright © 2015, 2017 Alex Kost <alezost@gmail.com>
# Copyright © 2016, 2018 Mathieu Lirzin <mthl@gnu.org>
# Copyright © 2016, 2017, 2018 Mark H Weaver <mhw@netris.org>
# Copyright © 2016, 2017, 2018, 2019 Mark H Weaver <mhw@netris.org>
# Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
# Copyright © 2017 Leo Famulari <leo@famulari.name>
# Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
@ -283,10 +283,10 @@ dist_noinst_DATA = guix/tests.scm guix/tests/http.scm
AUX_FILES = \
gnu/packages/aux-files/chromium/master-preferences.json \
gnu/packages/aux-files/emacs/guix-emacs.el \
gnu/packages/aux-files/linux-libre/4.20-arm.conf \
gnu/packages/aux-files/linux-libre/4.20-arm64.conf \
gnu/packages/aux-files/linux-libre/4.20-i686.conf \
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf \
gnu/packages/aux-files/linux-libre/5.0-arm.conf \
gnu/packages/aux-files/linux-libre/5.0-arm64.conf \
gnu/packages/aux-files/linux-libre/5.0-i686.conf \
gnu/packages/aux-files/linux-libre/5.0-x86_64.conf \
gnu/packages/aux-files/linux-libre/4.19-arm.conf \
gnu/packages/aux-files/linux-libre/4.19-arm64.conf \
gnu/packages/aux-files/linux-libre/4.19-i686.conf \
@ -392,6 +392,7 @@ SCM_TESTS = \
tests/file-systems.scm \
tests/uuid.scm \
tests/system.scm \
tests/accounts.scm \
tests/services.scm \
tests/scripts-build.scm \
tests/containers.scm \

34
doc/guix.texi
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@ -4777,6 +4777,23 @@ symlink target.
For instance, @code{-S /opt/gnu/bin=bin} creates a @file{/opt/gnu/bin}
symlink pointing to the @file{bin} sub-directory of the profile.
@item --save-provenance
Save provenance information for the packages passed on the command line.
Provenance information includes the URL and commit of the channels in use
(@pxref{Channels}).
Provenance information is saved in the
@file{/gnu/store/@dots{}-profile/manifest} file in the pack, along with the
usual package metadata---the name and version of each package, their
propagated inputs, and so on. It is useful information to the recipient of
the pack, who then knows how the pack was (supposedly) obtained.
This option is not enabled by default because, like timestamps, provenance
information contributes nothing to the build process. In other words, there
is an infinity of channel URLs and commit IDs that can lead to the same pack.
Recording such ``silent'' metadata in the output thus potentially breaks the
source-to-binary bitwise reproducibility property.
@item --localstatedir
@itemx --profile-name=@var{name}
Include the ``local state directory'', @file{/var/guix}, in the resulting
@ -6221,8 +6238,11 @@ The outputs of the derivation---derivations produce at least one file or
directory in the store, but may produce more.
@item
The inputs of the derivations, which may be other derivations or plain
files in the store (patches, build scripts, etc.)
@cindex build-time dependencies
@cindex dependencies, build-time
The inputs of the derivations---i.e., its build-time dependencies---which may
be other derivations or plain files in the store (patches, build scripts,
etc.)
@item
The system type targeted by the derivation---e.g., @code{x86_64-linux}.
@ -6253,6 +6273,16 @@ of a fixed-output derivation are independent of its inputs---e.g., a
source code download produces the same result regardless of the download
method and tools being used.
@cindex references
@cindex run-time dependencies
@cindex dependencies, run-time
The outputs of derivations---i.e., the build results---have a set of
@dfn{references}, as reported by the @code{references} RPC or the
@command{guix gc --references} command (@pxref{Invoking guix gc}). References
are the set of run-time dependencies of the build results. References are a
subset of the inputs of the derivation; this subset is automatically computed
by the build daemon by scanning all the files in the outputs.
The @code{(guix derivations)} module provides a representation of
derivations as Scheme objects, along with procedures to create and
otherwise manipulate derivations. The lowest-level primitive to create

7
etc/snippets/text-mode/guix-commit-message-add-package
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@ -3,6 +3,11 @@
# key: add
# condition: git-commit-mode
# --
gnu: Add $1.
gnu: Add ${1:`(with-temp-buffer
(magit-git-wash #'magit-diff-wash-diffs
"diff" "--staged")
(beginning-of-buffer)
(when (search-forward "(define-public " nil 'noerror)
(thing-at-point 'sexp 'no-properties)))`}.
* `(car (magit-staged-files))` ($1): New variable.

19
etc/snippets/text-mode/guix-commit-message-update-package
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@ -3,7 +3,24 @@
# key: update
# condition: git-commit-mode
# --
gnu: $1: Update to $2.
gnu: ${1:`(with-temp-buffer
(magit-git-wash #'magit-diff-wash-diffs
"diff" "--staged")
(beginning-of-buffer)
(when (search-forward "(define-public " nil 'noerror)
(thing-at-point 'sexp 'no-properties)))`}: Update to ${2:`(with-temp-buffer
(magit-git-wash #'magit-diff-wash-diffs
"diff" "--staged")
(beginning-of-buffer)
(search-forward "name" nil 'noerror)
(search-forward "+" nil 'noerror) ; first change
(when (and (search-forward "version " nil 'noerror)
(looking-at-p "\""))
(let ((end (save-excursion (search-forward "\")" nil 'noerror))))
(when end
(forward-char)
(buffer-substring-no-properties (point) (- end 2))))))`}.
* `(car (magit-staged-files))` ($1): Update to $2.$0
`(mapconcat (lambda (file) (concat "* " file)) (cdr (magit-staged-files)) "\n")`

561
gnu/build/accounts.scm Normal file
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@ -0,0 +1,561 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu build accounts)
#:use-module (guix records)
#:use-module (guix combinators)
#:use-module (gnu system accounts)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-11)
#:use-module (srfi srfi-19)
#:use-module (srfi srfi-26)
#:use-module (ice-9 match)
#:use-module (ice-9 vlist)
#:use-module (ice-9 rdelim)
#:export (password-entry
password-entry?
password-entry-name
password-entry-uid
password-entry-gid
password-entry-real-name
password-entry-directory
password-entry-shell
shadow-entry
shadow-entry?
shadow-entry-name
shadow-entry-minimum-change-period
shadow-entry-maximum-change-period
shadow-entry-change-warning-time
shadow-entry-maximum-inactivity
shadow-entry-expiration
group-entry
group-entry?
group-entry-name
group-entry-gid
group-entry-members
write-group
write-passwd
write-shadow
read-group
read-passwd
read-shadow
%id-min
%id-max
%system-id-min
%system-id-max
user+group-databases))
;;; Commentary:
;;;
;;; This modules provides functionality equivalent to the C library's
;;; <shadow.h>, <pwd.h>, and <grp.h> routines, as well as a subset of the
;;; functionality of the Shadow command-line tools. It can parse and write
;;; /etc/passwd, /etc/shadow, and /etc/group. It can also take care of UID
;;; and GID allocation in a way similar to what 'useradd' does.
;;;
;;; The benefit is twofold: less code is involved, and the ID allocation
;;; strategy and state preservation is made explicit.
;;;
;;; Code:
;;;
;;; Machinery to define user and group databases.
;;;
(define-syntax serialize-field
(syntax-rules (serialization)
((_ entry (field get (serialization ->string string->) _ ...))
(->string (get entry)))
((_ entry (field get _ ...))
(get entry))))
(define-syntax deserialize-field
(syntax-rules (serialization)
((_ str (field get (serialization ->string string->) _ ...))
(string-> str))
((_ str (field get _ ...))
str)))
(define-syntax let/fields
(syntax-rules ()
((_ (((name get attributes ...) rest ...) lst) body ...)
(let ((l lst))
(let ((name (deserialize-field (car l)
(name get attributes ...))))
(let/fields ((rest ...) (cdr l)) body ...))))
((_ (() lst) body ...)
(begin body ...))))
(define-syntax define-database-entry
(syntax-rules (serialization)
"Define a record data type, as per 'define-record-type*', with additional
information on how to serialize and deserialize the whole database as well as
each field."
((_ <record> record make-record record?
(serialization separator entry->string string->entry)
fields ...)
(let-syntax ((field-name
(syntax-rules ()
((_ (name _ (... ...))) name))))
(define-record-type* <record> record make-record
record?
fields ...)
(define (entry->string entry)
(string-join (list (serialize-field entry fields) ...)
(string separator)))
(define (string->entry str)
(let/fields ((fields ...) (string-split str #\:))
(make-record (field-name fields) ...)))))))
(define number->string*
(match-lambda
((? number? number) (number->string number))
(_ "")))
(define (false-if-string=? false-string)
(lambda (str)
(if (string=? str false-string)
#f
str)))
(define (string-if-false str)
(lambda (obj)
(if (not obj) str obj)))
(define (comma-separated->list str)
(string-tokenize str (char-set-complement (char-set #\,))))
(define (list->comma-separated lst)
(string-join lst ","))
;;;
;;; Database definitions.
;;;
(define-database-entry <password-entry> ;<pwd.h>
password-entry make-password-entry
password-entry?
(serialization #\: password-entry->string string->password-entry)
(name password-entry-name)
(password password-entry-password
(serialization (const "x") (const #f))
(default "x"))
(uid password-entry-uid
(serialization number->string string->number))
(gid password-entry-gid
(serialization number->string string->number))
(real-name password-entry-real-name
(default ""))
(directory password-entry-directory)
(shell password-entry-shell
(default "/bin/sh")))
(define-database-entry <shadow-entry> ;<shadow.h>
shadow-entry make-shadow-entry
shadow-entry?
(serialization #\: shadow-entry->string string->shadow-entry)
(name shadow-entry-name) ;string
(password shadow-entry-password ;string | #f
(serialization (string-if-false "!")
(false-if-string=? "!"))
(default #f))
(last-change shadow-entry-last-change ;days since 1970-01-01
(serialization number->string* string->number)
(default 0))
(minimum-change-period shadow-entry-minimum-change-period
(serialization number->string* string->number)
(default #f)) ;days | #f
(maximum-change-period shadow-entry-maximum-change-period
(serialization number->string* string->number)
(default #f)) ;days | #f
(change-warning-time shadow-entry-change-warning-time
(serialization number->string* string->number)
(default #f)) ;days | #f
(maximum-inactivity shadow-entry-maximum-inactivity
(serialization number->string* string->number)
(default #f)) ;days | #f
(expiration shadow-entry-expiration
(serialization number->string* string->number)
(default #f)) ;days since 1970-01-01 | #f
(flags shadow-entry-flags ;"reserved"
(serialization number->string* string->number)
(default #f)))
(define-database-entry <group-entry> ;<grp.h>
group-entry make-group-entry
group-entry?
(serialization #\: group-entry->string string->group-entry)
(name group-entry-name)
(password group-entry-password
(serialization (string-if-false "x")
(false-if-string=? "x"))
(default #f))
(gid group-entry-gid
(serialization number->string string->number))
(members group-entry-members
(serialization list->comma-separated comma-separated->list)
(default '())))
(define (database-writer file mode entry->string)
(lambda* (entries #:optional (file-or-port file))
"Write ENTRIES to FILE-OR-PORT. When FILE-OR-PORT is a file name, write
to it atomically and set the appropriate permissions."
(define (write-entries port)
(for-each (lambda (entry)
(display (entry->string entry) port)
(newline port))
entries))
(if (port? file-or-port)
(write-entries file-or-port)
(let* ((template (string-append file-or-port ".XXXXXX"))
(port (mkstemp! template)))
(dynamic-wind
(const #t)
(lambda ()
(chmod port mode)
(write-entries port)
(rename-file template file-or-port))
(lambda ()
(close-port port)
(when (file-exists? template)
(delete-file template))))))))
(define write-passwd
(database-writer "/etc/passwd" #o644 password-entry->string))
(define write-shadow
(database-writer "/etc/shadow" #o600 shadow-entry->string))
(define write-group
(database-writer "/etc/group" #o644 group-entry->string))
(define (database-reader file string->entry)
(lambda* (#:optional (file-or-port file))
(define (read-entries port)
(let loop ((entries '()))
(match (read-line port)
((? eof-object?)
(reverse entries))
(line
(loop (cons (string->entry line) entries))))))
(if (port? file-or-port)
(read-entries file-or-port)
(call-with-input-file file-or-port
read-entries))))
(define read-passwd
(database-reader "/etc/passwd" string->password-entry))
(define read-shadow
(database-reader "/etc/shadow" string->shadow-entry))
(define read-group
(database-reader "/etc/group" string->group-entry))
;;;
;;; Building databases.
;;;
(define-record-type* <allocation>
allocation make-allocation
allocation?
(ids allocation-ids (default vlist-null))
(next-id allocation-next-id (default %id-min))
(next-system-id allocation-next-system-id (default %system-id-max)))
;; Trick to avoid name clashes...
(define-syntax %allocation (identifier-syntax allocation))
;; Minimum and maximum UIDs and GIDs (from find_new_uid.c and find_new_gid.c
;; in Shadow.)
(define %id-min 1000)
(define %id-max 60000)
(define %system-id-min 100)
(define %system-id-max 999)
(define (system-id? id)
(and (> id %system-id-min)
(<= id %system-id-max)))
(define (user-id? id)
(and (>= id %id-min)
(< id %id-max)))
(define* (allocate-id assignment #:key system?)
"Return two values: a newly allocated ID, and an updated <allocation> record
based on ASSIGNMENT. If SYSTEM? is true, return a system ID."
(define next
;; Return the next available ID, looping if necessary.
(if system?
(lambda (id)
(let ((next-id (- id 1)))
(if (< next-id %system-id-min)
%system-id-max
next-id)))
(lambda (id)
(let ((next-id (+ id 1)))
(if (>= next-id %id-max)
%id-min
next-id)))))
(let loop ((id (if system?
(allocation-next-system-id assignment)
(allocation-next-id assignment))))
(if (vhash-assv id (allocation-ids assignment))
(loop (next id))
(let ((taken (vhash-consv id #t (allocation-ids assignment))))
(values (if system?
(allocation (inherit assignment)
(next-system-id (next id))
(ids taken))
(allocation (inherit assignment)
(next-id (next id))
(ids taken)))
id)))))
(define* (reserve-ids allocation ids #:key (skip? #t))
"Mark the numbers listed in IDS as reserved in ALLOCATION. When SKIP? is
true, start allocation after the highest (or lowest, depending on whether it's
a system ID allocation) number among IDS."
(%allocation
(inherit allocation)
(next-id (if skip?
(+ (reduce max
(- (allocation-next-id allocation) 1)
(filter user-id? ids))
1)
(allocation-next-id allocation)))
(next-system-id
(if skip?
(- (reduce min
(+ 1 (allocation-next-system-id allocation))
(filter system-id? ids))
1)
(allocation-next-system-id allocation)))
(ids (fold (cut vhash-consv <> #t <>)
(allocation-ids allocation)
ids))))
(define (allocated? allocation id)
"Return true if ID is already allocated as part of ALLOCATION."
(->bool (vhash-assv id (allocation-ids allocation))))
(define (lookup-procedure lst key)
"Return a lookup procedure for the elements of LST, calling KEY to obtain
the key of each element."
(let ((table (fold (lambda (obj table)
(vhash-cons (key obj) obj table))
vlist-null
lst)))
(lambda (key)
(match (vhash-assoc key table)
(#f #f)
((_ . value) value)))))
(define* (allocate-groups groups members
#:optional (current-groups '()))
"Return a list of group entries for GROUPS, a list of <user-group>. Members
for each group are taken from MEMBERS, a vhash that maps group names to member
names. GIDs and passwords found in CURRENT-GROUPS, a list of group entries,
are reused."
(define gids
;; Mark all the currently-used GIDs and the explicitly requested GIDs as
;; reserved.
(reserve-ids (reserve-ids (allocation)
(map group-entry-gid current-groups))
(filter-map user-group-id groups)
#:skip? #f))
(define previous-entry
(lookup-procedure current-groups group-entry-name))
(reverse
(fold2 (lambda (group result allocation)
(let ((name (user-group-name group))
(password (user-group-password group))
(requested-id (user-group-id group))
(system? (user-group-system? group)))
(let*-values (((previous)
(previous-entry name))
((allocation id)
(cond
((number? requested-id)
(values (reserve-ids allocation
(list requested-id))
requested-id))
(previous
(values allocation
(group-entry-gid previous)))
(else
(allocate-id allocation
#:system? system?)))))
(values (cons (group-entry
(name name)
(password
(if previous
(group-entry-password previous)
password))
(gid id)
(members (vhash-fold* cons '() name members)))
result)
allocation))))
'()
gids
groups)))
(define* (allocate-passwd users groups #:optional (current-passwd '()))
"Return a list of password entries for USERS, a list of <user-account>.
Take GIDs from GROUPS, a list of group entries. Reuse UIDs from
CURRENT-PASSWD, a list of password entries, when possible; otherwise allocate
new UIDs."
(define uids
(reserve-ids (reserve-ids (allocation)
(map password-entry-uid current-passwd))
(filter-map user-account-uid users)
#:skip? #f))
(define previous-entry
(lookup-procedure current-passwd password-entry-name))
(define (group-id name)
(or (any (lambda (entry)
(and (string=? (group-entry-name entry) name)
(group-entry-gid entry)))
groups)
(error "group not found" name)))
(reverse
(fold2 (lambda (user result allocation)
(let ((name (user-account-name user))
(requested-id (user-account-uid user))
(group (user-account-group user))
(real-name (user-account-comment user))
(directory (user-account-home-directory user))
(shell (user-account-shell user))
(system? (user-account-system? user)))
(let*-values (((previous)
(previous-entry name))
((allocation id)
(cond
((number? requested-id)
(values (reserve-ids allocation
(list requested-id))
requested-id))
(previous
(values allocation
(password-entry-uid previous)))
(else
(allocate-id allocation
#:system? system?)))))
(values (cons (password-entry
(name name)
(uid id)
(directory directory)
(gid (if (number? group) group (group-id group)))
(real-name (if previous
(password-entry-real-name previous)
real-name))
(shell (if previous
(password-entry-shell previous)
shell)))
result)
allocation))))
'()
uids
users)))
(define* (days-since-epoch #:optional (current-time current-time))
"Return the number of days elapsed since the 1st of January, 1970."
(let* ((now (current-time time-utc))
(epoch (make-time time-utc 0 0))
(diff (time-difference now epoch)))
(quotient (time-second diff) (* 24 3600))))
(define* (passwd->shadow users passwd #:optional (current-shadow '())
#:key (current-time current-time))
"Return a list of shadow entries for the password entries listed in PASSWD.
Reuse shadow entries from CURRENT-SHADOW when they exist, and take the initial
password from USERS."
(define previous-entry
(lookup-procedure current-shadow shadow-entry-name))
(define now
(days-since-epoch current-time))
(map (lambda (user passwd)
(or (previous-entry (password-entry-name passwd))
(shadow-entry (name (password-entry-name passwd))
(password (user-account-password user))
(last-change now))))
users passwd))
(define (empty-if-not-found thunk)
"Call THUNK and return the empty list if that throws to ENOENT."
(catch 'system-error
thunk
(lambda args
(if (= ENOENT (system-error-errno args))
'()
(apply throw args)))))
(define* (user+group-databases users groups
#:key
(current-passwd
(empty-if-not-found read-passwd))
(current-groups
(empty-if-not-found read-group))
(current-shadow
(empty-if-not-found read-shadow))
(current-time current-time))
"Return three values: the list of group entries, the list of password
entries, and the list of shadow entries corresponding to USERS and GROUPS.
Preserve stateful bits from CURRENT-PASSWD, CURRENT-GROUPS, and
CURRENT-SHADOW: UIDs, GIDs, passwords, user shells, etc."
(define members
;; Map group name to user names.
(fold (lambda (user members)
(fold (cute vhash-cons <> (user-account-name user) <>)
members
(user-account-supplementary-groups user)))
vlist-null
users))
(define group-entries
(allocate-groups groups members current-groups))
(define passwd-entries
(allocate-passwd users group-entries current-passwd))
(define shadow-entries
(passwd->shadow users passwd-entries current-shadow
#:current-time current-time))
(values group-entries passwd-entries shadow-entries))

266
gnu/build/activation.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;;
;;; This file is part of GNU Guix.
@ -18,11 +18,15 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu build activation)
#:use-module (gnu system accounts)
#:use-module (gnu build accounts)
#:use-module (gnu build linux-boot)
#:use-module (guix build utils)
#:use-module (ice-9 ftw)
#:use-module (ice-9 match)
#:use-module (ice-9 vlist)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-11)
#:use-module (srfi srfi-26)
#:export (activate-users+groups
activate-user-home
@ -42,35 +46,6 @@
;;;
;;; Code:
(define (enumerate thunk)
"Return the list of values returned by THUNK until it returned #f."
(let loop ((entry (thunk))
(result '()))
(if (not entry)
(reverse result)
(loop (thunk) (cons entry result)))))
(define (current-users)
"Return the passwd entries for all the currently defined user accounts."
(setpw)
(enumerate getpwent))
(define (current-groups)
"Return the group entries for all the currently defined user groups."
(setgr)
(enumerate getgrent))
(define* (add-group name #:key gid password system?
(log-port (current-error-port)))
"Add NAME as a user group, with the given numeric GID if specified."
;; Use 'groupadd' from the Shadow package.
(format log-port "adding group '~a'...~%" name)
(let ((args `(,@(if gid `("-g" ,(number->string gid)) '())
,@(if password `("-p" ,password) '())
,@(if system? `("--system") '())
,name)))
(zero? (apply system* "groupadd" args))))
(define %skeleton-directory
;; Directory containing skeleton files for new accounts.
;; Note: keep the trailing '/' so that 'scandir' enters it.
@ -116,191 +91,82 @@ owner-writable in HOME."
(make-file-writable target))))
files)))
(define* (add-user name group
#:key uid comment home create-home?
shell password system?
(supplementary-groups '())
(log-port (current-error-port)))
"Create an account for user NAME part of GROUP, with the specified
properties. Return #t on success."
(format log-port "adding user '~a'...~%" name)
(if (and uid (zero? uid))
;; 'useradd' fails with "Cannot determine your user name" if the root
;; account doesn't exist. Thus, for bootstrapping purposes, create that
;; one manually.
(let ((home (or home "/root")))
(call-with-output-file "/etc/shadow"
(cut format <> "~a::::::::~%" name))
(call-with-output-file "/etc/passwd"
(cut format <> "~a:x:~a:~a:~a:~a:~a~%"
name "0" "0" comment home shell))
(chmod "/etc/shadow" #o600)
(copy-account-skeletons home)
(chmod home #o700)
#t)
;; Use 'useradd' from the Shadow package.
(let ((args `(,@(if uid `("-u" ,(number->string uid)) '())
"-g" ,(if (number? group) (number->string group) group)
,@(if (pair? supplementary-groups)
`("-G" ,(string-join supplementary-groups ","))
'())
,@(if comment `("-c" ,comment) '())
,@(if home `("-d" ,home) '())
;; Home directories of non-system accounts are created by
;; 'activate-user-home'.
,@(if (and home create-home? system?
(not (file-exists? home)))
'("--create-home")
'())
,@(if shell `("-s" ,shell) '())
,@(if password `("-p" ,password) '())
,@(if system? '("--system") '())
,name)))
(and (zero? (apply system* "useradd" args))
(begin
;; Since /etc/skel is a link to a directory in the store where
;; all files have the writable bit cleared, and since 'useradd'
;; preserves permissions when it copies them, explicitly make
;; them writable.
(make-skeletons-writable home)
#t)))))
(define* (modify-user name group
#:key uid comment home create-home?
shell password system?
(supplementary-groups '())
(log-port (current-error-port)))
"Modify user account NAME to have all the given settings."
;; Use 'usermod' from the Shadow package.
(let ((args `(,@(if uid `("-u" ,(number->string uid)) '())
"-g" ,(if (number? group) (number->string group) group)
,@(if (pair? supplementary-groups)
`("-G" ,(string-join supplementary-groups ","))
'())
,@(if comment `("-c" ,comment) '())
;; Don't use '--move-home'.
,@(if home `("-d" ,home) '())
,@(if shell `("-s" ,shell) '())
,name)))
(zero? (apply system* "usermod" args))))
(define* (delete-user name #:key (log-port (current-error-port)))
"Remove user account NAME. Return #t on success. This may fail if NAME is
logged in."
(format log-port "deleting user '~a'...~%" name)
(zero? (system* "userdel" name)))
(define* (delete-group name #:key (log-port (current-error-port)))
"Remove group NAME. Return #t on success."
(format log-port "deleting group '~a'...~%" name)
(zero? (system* "groupdel" name)))
(define* (ensure-user name group
#:key uid comment home create-home?
shell password system?
(supplementary-groups '())
(log-port (current-error-port))
#:rest rest)
"Make sure user NAME exists and has the relevant settings."
(if (false-if-exception (getpwnam name))
(apply modify-user name group rest)
(apply add-user name group rest)))
(define (duplicates lst)
"Return elements from LST present more than once in LST."
(let loop ((lst lst)
(seen vlist-null)
(result '()))
(match lst
(()
(reverse result))
((head . tail)
(loop tail
(vhash-cons head #t seen)
(if (vhash-assoc head seen)
(cons head result)
result))))))
(define (activate-users+groups users groups)
"Make sure the accounts listed in USERS and the user groups listed in GROUPS
are all available.
"Make sure USERS (a list of user account records) and GROUPS (a list of user
group records) are all available."
(define (make-home-directory user)
(let ((home (user-account-home-directory user))
(pwd (getpwnam (user-account-name user))))
(mkdir-p home)
Each item in USERS is a list of all the characteristics of a user account;
each item in GROUPS is a tuple with the group name, group password or #f, and
numeric gid or #f."
(define (touch file)
(close-port (open-file file "a0b")))
;; Always set ownership and permissions for home directories of system
;; accounts. If a service needs looser permissions on its home
;; directories, it can always chmod it in an activation snippet.
(chown home (passwd:uid pwd) (passwd:gid pwd))
(chmod home #o700)))
(define activate-user
(match-lambda
((name uid group supplementary-groups comment home create-home?
shell password system?)
(let ((profile-dir (string-append "/var/guix/profiles/per-user/"
name)))
(ensure-user name group
#:uid uid
#:system? system?
#:supplementary-groups supplementary-groups
#:comment comment
#:home home
#:create-home? create-home?
#:shell shell
#:password password)
(unless system?
;; Create the profile directory for the new account.
(let ((pw (getpwnam name)))
(mkdir-p profile-dir)
(chown profile-dir (passwd:uid pw) (passwd:gid pw))))))))
;; 'groupadd' aborts if the file doesn't already exist.
(touch "/etc/group")
(define system-accounts
(filter (lambda (user)
(and (user-account-system? user)
(user-account-create-home-directory? user)))
users))
;; Allow home directories to be created under /var/lib.
(mkdir-p "/var/lib")
;; Create the root account so we can use 'useradd' and 'groupadd'.
(activate-user (find (match-lambda
((name (? zero?) _ ...) #t)
(_ #f))
users))
(let-values (((groups passwd shadow)
(user+group-databases users groups)))
(write-group groups)
(write-passwd passwd)
(write-shadow shadow)
;; Then create the groups.
(for-each (match-lambda
((name password gid system?)
(unless (false-if-exception (getgrnam name))
(add-group name
#:gid gid #:password password
#:system? system?))))
groups)
;; Home directories of non-system accounts are created by
;; 'activate-user-home'.
(for-each make-home-directory system-accounts)
;; Create the other user accounts.
(for-each activate-user users)
;; Finally, delete extra user accounts and groups.
(for-each delete-user
(lset-difference string=?
(map passwd:name (current-users))
(match users
(((names . _) ...)
names))))
(for-each delete-group
(lset-difference string=?
(map group:name (current-groups))
(match groups
(((names . _) ...)
names)))))
;; Turn shared home directories, such as /var/empty, into root-owned,
;; read-only places.
(for-each (lambda (directory)
(chown directory 0 0)
(chmod directory #o555))
(duplicates (map user-account-home-directory system-accounts)))))
(define (activate-user-home users)
"Create and populate the home directory of USERS, a list of tuples, unless
they already exist."
(define ensure-user-home
(match-lambda
((name uid group supplementary-groups comment home create-home?
shell password system?)
;; The home directories of system accounts are created during
;; activation, not here.
(unless (or (not home) (not create-home?) system?
(directory-exists? home))
(let* ((pw (getpwnam name))
(uid (passwd:uid pw))
(gid (passwd:gid pw)))
(mkdir-p home)
(chown home uid gid)
(chmod home #o700)
(copy-account-skeletons home
#:uid uid #:gid gid))))))
(lambda (user)
(let ((name (user-account-name user))
(home (user-account-home-directory user))
(create-home? (user-account-create-home-directory? user))
(system? (user-account-system? user)))
;; The home directories of system accounts are created during
;; activation, not here.
(unless (or (not home) (not create-home?) system?
(directory-exists? home))
(let* ((pw (getpwnam name))
(uid (passwd:uid pw))
(gid (passwd:gid pw)))
(mkdir-p home)
(chown home uid gid)
(chmod home #o700)
(copy-account-skeletons home
#:uid uid #:gid gid))))))
(for-each ensure-user-home users))

3
gnu/build/install.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Chris Marusich <cmmarusich@gmail.com>
;;;
;;; This file is part of GNU Guix.
@ -117,7 +117,6 @@ STORE."
(directory "/var/tmp" 0 0 #o1777)
(directory "/var/lock" 0 0 #o1777)
(directory "/root" 0 0) ; an exception
(directory "/home" 0 0)))
(define (populate-root-file-system system target)

4
gnu/local.mk
View File

@ -236,6 +236,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/hexedit.scm \
%D%/packages/hugs.scm \
%D%/packages/hurd.scm \
%D%/packages/hyperledger.scm \
%D%/packages/ibus.scm \
%D%/packages/icu4c.scm \
%D%/packages/idris.scm \
@ -532,6 +533,7 @@ GNU_SYSTEM_MODULES = \
%D%/services/xorg.scm \
\
%D%/system.scm \
%D%/system/accounts.scm \
%D%/system/file-systems.scm \
%D%/system/install.scm \
%D%/system/linux-container.scm \
@ -544,6 +546,7 @@ GNU_SYSTEM_MODULES = \
%D%/system/uuid.scm \
%D%/system/vm.scm \
\
%D%/build/accounts.scm \
%D%/build/activation.scm \
%D%/build/bootloader.scm \
%D%/build/cross-toolchain.scm \
@ -668,7 +671,6 @@ dist_patch_DATA = \
%D%/packages/patches/beignet-correct-file-names.patch \
%D%/packages/patches/biber-fix-encoding-write.patch \
%D%/packages/patches/binutils-loongson-workaround.patch \
%D%/packages/patches/blast+-fix-makefile.patch \
%D%/packages/patches/boost-fix-icu-build.patch \
%D%/packages/patches/byobu-writable-status.patch \
%D%/packages/patches/calibre-no-updates-dialog.patch \

5
gnu/packages/admin.scm
View File

@ -2919,7 +2919,7 @@ Logitech Unifying Receiver.")
(define-public lynis
(package
(name "lynis")
(version "2.7.1")
(version "2.7.2")
(source
(origin
(method git-fetch)
@ -2928,8 +2928,7 @@ Logitech Unifying Receiver.")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"1nv2dqd2k2n8mcdr6xl5g713xxkgvja6487by1wn4k0b416jij9i"))
(base32 "0dbbfk47dpxx7zpb98n4w3ls3z5di57qnr2nsgxjvp49gk9j3f6k"))
(modules '((guix build utils)))
(snippet
'(begin

296
gnu/packages/aux-files/linux-libre/4.20-arm.conf → gnu/packages/aux-files/linux-libre/5.0-arm.conf
View File

@ -1,6 +1,6 @@
#
# Automatically generated file; DO NOT EDIT.
# Linux/arm 4.20.0-gnu Kernel Configuration
# Linux/arm 5.0.0-gnu Kernel Configuration
#
#
@ -9,6 +9,7 @@
CONFIG_CC_IS_GCC=y
CONFIG_GCC_VERSION=70400
CONFIG_CLANG_VERSION=0
CONFIG_CC_HAS_ASM_GOTO=y
CONFIG_IRQ_WORK=y
CONFIG_BUILDTIME_EXTABLE_SORT=y
@ -41,8 +42,6 @@ CONFIG_CROSS_MEMORY_ATTACH=y
CONFIG_AUDIT=y
CONFIG_HAVE_ARCH_AUDITSYSCALL=y
CONFIG_AUDITSYSCALL=y
CONFIG_AUDIT_WATCH=y
CONFIG_AUDIT_TREE=y
#
# IRQ subsystem
@ -51,6 +50,7 @@ CONFIG_GENERIC_IRQ_PROBE=y
CONFIG_GENERIC_IRQ_SHOW=y
CONFIG_GENERIC_IRQ_SHOW_LEVEL=y
CONFIG_GENERIC_IRQ_EFFECTIVE_AFF_MASK=y
CONFIG_GENERIC_IRQ_MIGRATION=y
CONFIG_HARDIRQS_SW_RESEND=y
CONFIG_GENERIC_IRQ_CHIP=y
CONFIG_IRQ_DOMAIN=y
@ -217,7 +217,6 @@ CONFIG_ARM=y
CONFIG_ARM_HAS_SG_CHAIN=y
CONFIG_ARM_DMA_USE_IOMMU=y
CONFIG_ARM_DMA_IOMMU_ALIGNMENT=8
CONFIG_MIGHT_HAVE_PCI=y
CONFIG_SYS_SUPPORTS_APM_EMULATION=y
CONFIG_HAVE_PROC_CPU=y
CONFIG_NO_IOPORT_MAP=y
@ -365,6 +364,7 @@ CONFIG_SOC_IMX6Q=y
# Cortex-A/Cortex-M asymmetric multiprocessing platforms
#
# CONFIG_SOC_IMX7D is not set
# CONFIG_SOC_IMX7ULP is not set
# CONFIG_SOC_VF610 is not set
# CONFIG_ARCH_KEYSTONE is not set
# CONFIG_ARCH_MEDIATEK is not set
@ -427,6 +427,7 @@ CONFIG_MACH_OMAP3_PANDORA=y
# CONFIG_OMAP5_ERRATA_801819 is not set
# CONFIG_ARCH_SIRF is not set
# CONFIG_ARCH_QCOM is not set
# CONFIG_ARCH_RDA is not set
# CONFIG_ARCH_REALVIEW is not set
CONFIG_ARCH_ROCKCHIP=y
# CONFIG_ARCH_S5PV210 is not set
@ -537,77 +538,6 @@ CONFIG_ARM_ERRATA_773022=y
#
# Bus support
#
CONFIG_PCI=y
CONFIG_PCI_DOMAINS=y
CONFIG_PCI_DOMAINS_GENERIC=y
CONFIG_PCI_SYSCALL=y
CONFIG_PCIEPORTBUS=y
CONFIG_PCIEAER=y
CONFIG_PCIEAER_INJECT=m
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
# CONFIG_PCIEASPM_DEBUG is not set
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_STUB=m
CONFIG_PCI_ECAM=y
CONFIG_PCI_BRIDGE_EMUL=y
# CONFIG_PCI_IOV is not set
# CONFIG_PCI_PRI is not set
# CONFIG_PCI_PASID is not set
CONFIG_PCI_LABEL=y
# CONFIG_HOTPLUG_PCI is not set
#
# PCI controller drivers
#
CONFIG_PCI_MVEBU=y
#
# Cadence PCIe controllers support
#
# CONFIG_PCIE_CADENCE_HOST is not set
# CONFIG_PCI_FTPCI100 is not set
CONFIG_PCI_TEGRA=y
CONFIG_PCI_HOST_COMMON=y
CONFIG_PCI_HOST_GENERIC=y
# CONFIG_PCIE_XILINX is not set
# CONFIG_PCI_V3_SEMI is not set
# CONFIG_PCIE_ALTERA is not set
CONFIG_PCIE_ROCKCHIP=y
CONFIG_PCIE_ROCKCHIP_HOST=m
#
# DesignWare PCI Core Support
#
CONFIG_PCIE_DW=y
CONFIG_PCIE_DW_HOST=y
CONFIG_PCI_DRA7XX=y
CONFIG_PCI_DRA7XX_HOST=y
# CONFIG_PCIE_DW_PLAT_HOST is not set
CONFIG_PCI_IMX6=y
# CONFIG_PCI_LAYERSCAPE is not set
# CONFIG_PCIE_ARMADA_8K is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
# CONFIG_PCI_SW_SWITCHTEC is not set
# CONFIG_PCCARD is not set
#
# Kernel Features
@ -661,6 +591,7 @@ CONFIG_PARAVIRT=y
# CONFIG_PARAVIRT_TIME_ACCOUNTING is not set
CONFIG_XEN_DOM0=y
CONFIG_XEN=y
CONFIG_STACKPROTECTOR_PER_TASK=y
#
# Boot options
@ -766,6 +697,7 @@ CONFIG_PM_GENERIC_DOMAINS=y
CONFIG_PM_GENERIC_DOMAINS_SLEEP=y
CONFIG_PM_GENERIC_DOMAINS_OF=y
CONFIG_CPU_PM=y
CONFIG_ENERGY_MODEL=y
CONFIG_ARCH_SUSPEND_POSSIBLE=y
CONFIG_ARM_CPU_SUSPEND=y
CONFIG_ARCH_HIBERNATION_POSSIBLE=y
@ -781,6 +713,7 @@ CONFIG_ARM_SCMI_POWER_DOMAIN=m
CONFIG_DMIID=y
CONFIG_DMI_SYSFS=y
CONFIG_RASPBERRYPI_FIRMWARE=y
# CONFIG_INTEL_STRATIX10_SERVICE is not set
CONFIG_HAVE_ARM_SMCCC=y
# CONFIG_GOOGLE_FIRMWARE is not set
@ -881,6 +814,7 @@ CONFIG_GCC_PLUGIN_STRUCTLEAK=y
CONFIG_GCC_PLUGIN_STRUCTLEAK_BYREF_ALL=y
# CONFIG_GCC_PLUGIN_STRUCTLEAK_VERBOSE is not set
# CONFIG_GCC_PLUGIN_RANDSTRUCT is not set
CONFIG_GCC_PLUGIN_ARM_SSP_PER_TASK=y
CONFIG_RT_MUTEXES=y
CONFIG_BASE_SMALL=0
CONFIG_MODULES=y
@ -905,7 +839,6 @@ CONFIG_BLK_DEV_THROTTLING=y
# CONFIG_BLK_CMDLINE_PARSER is not set
CONFIG_BLK_WBT=y
# CONFIG_BLK_CGROUP_IOLATENCY is not set
# CONFIG_BLK_WBT_SQ is not set
CONFIG_BLK_WBT_MQ=y
CONFIG_BLK_DEBUG_FS=y
# CONFIG_BLK_SED_OPAL is not set
@ -941,14 +874,6 @@ CONFIG_BLK_PM=y
#
# IO Schedulers
#
CONFIG_IOSCHED_NOOP=y
CONFIG_IOSCHED_DEADLINE=y
CONFIG_IOSCHED_CFQ=y
CONFIG_CFQ_GROUP_IOSCHED=y
# CONFIG_DEFAULT_DEADLINE is not set
CONFIG_DEFAULT_CFQ=y
# CONFIG_DEFAULT_NOOP is not set
CONFIG_DEFAULT_IOSCHED="cfq"
CONFIG_MQ_IOSCHED_DEADLINE=y
CONFIG_MQ_IOSCHED_KYBER=m
CONFIG_IOSCHED_BFQ=m
@ -1014,6 +939,7 @@ CONFIG_FRAME_VECTOR=y
CONFIG_NET=y
CONFIG_NET_INGRESS=y
CONFIG_NET_EGRESS=y
CONFIG_SKB_EXTENSIONS=y
#
# Networking options
@ -1177,9 +1103,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m
CONFIG_NETFILTER_NETLINK_GLUE_CT=y
CONFIG_NF_NAT=m
CONFIG_NF_NAT_NEEDED=y
CONFIG_NF_NAT_PROTO_DCCP=y
CONFIG_NF_NAT_PROTO_UDPLITE=y
CONFIG_NF_NAT_PROTO_SCTP=y
CONFIG_NF_NAT_AMANDA=m
CONFIG_NF_NAT_FTP=m
CONFIG_NF_NAT_IRC=m
@ -1385,7 +1308,6 @@ CONFIG_NF_REJECT_IPV4=m
CONFIG_NF_NAT_IPV4=m
CONFIG_NF_NAT_MASQUERADE_IPV4=y
CONFIG_NF_NAT_SNMP_BASIC=m
CONFIG_NF_NAT_PROTO_GRE=m
CONFIG_NF_NAT_PPTP=m
CONFIG_NF_NAT_H323=m
CONFIG_IP_NF_IPTABLES=m
@ -1866,6 +1788,80 @@ CONFIG_HAVE_EBPF_JIT=y
#
CONFIG_ARM_AMBA=y
CONFIG_TEGRA_AHB=y
CONFIG_HAVE_PCI=y
CONFIG_PCI=y
CONFIG_PCI_DOMAINS=y
CONFIG_PCI_DOMAINS_GENERIC=y
CONFIG_PCI_SYSCALL=y
CONFIG_PCIEPORTBUS=y
CONFIG_PCIEAER=y
CONFIG_PCIEAER_INJECT=m
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
# CONFIG_PCIEASPM_DEBUG is not set
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_STUB=m
CONFIG_PCI_ECAM=y
CONFIG_PCI_BRIDGE_EMUL=y
# CONFIG_PCI_IOV is not set
# CONFIG_PCI_PRI is not set
# CONFIG_PCI_PASID is not set
CONFIG_PCI_LABEL=y
# CONFIG_HOTPLUG_PCI is not set
#
# PCI controller drivers
#
CONFIG_PCI_MVEBU=y
#
# Cadence PCIe controllers support
#
# CONFIG_PCIE_CADENCE_HOST is not set
# CONFIG_PCI_FTPCI100 is not set
CONFIG_PCI_TEGRA=y
CONFIG_PCI_HOST_COMMON=y
CONFIG_PCI_HOST_GENERIC=y
# CONFIG_PCIE_XILINX is not set
# CONFIG_PCI_V3_SEMI is not set
# CONFIG_PCIE_ALTERA is not set
CONFIG_PCIE_ROCKCHIP=y
CONFIG_PCIE_ROCKCHIP_HOST=m
#
# DesignWare PCI Core Support
#
CONFIG_PCIE_DW=y
CONFIG_PCIE_DW_HOST=y
CONFIG_PCI_DRA7XX=y
CONFIG_PCI_DRA7XX_HOST=y
# CONFIG_PCIE_DW_PLAT_HOST is not set
CONFIG_PCI_IMX6=y
# CONFIG_PCI_LAYERSCAPE is not set
# CONFIG_PCIE_ARMADA_8K is not set
# CONFIG_PCI_MESON is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
# CONFIG_PCI_SW_SWITCHTEC is not set
# CONFIG_PCCARD is not set
# CONFIG_RAPIDIO is not set
#
# Generic Driver Options
@ -1937,7 +1933,6 @@ CONFIG_PROC_EVENTS=y
CONFIG_GNSS=m
CONFIG_MTD=y
# CONFIG_MTD_TESTS is not set
# CONFIG_MTD_REDBOOT_PARTS is not set
# CONFIG_MTD_CMDLINE_PARTS is not set
# CONFIG_MTD_AFS_PARTS is not set
CONFIG_MTD_OF_PARTS=m
@ -1946,6 +1941,7 @@ CONFIG_MTD_AR7_PARTS=m
#
# Partition parsers
#
# CONFIG_MTD_REDBOOT_PARTS is not set
#
# User Modules And Translation Layers
@ -2112,10 +2108,12 @@ CONFIG_BLK_DEV_NVME=y
CONFIG_NVME_FABRICS=m
CONFIG_NVME_RDMA=m
# CONFIG_NVME_FC is not set
# CONFIG_NVME_TCP is not set
CONFIG_NVME_TARGET=m
# CONFIG_NVME_TARGET_LOOP is not set
CONFIG_NVME_TARGET_RDMA=m
# CONFIG_NVME_TARGET_FC is not set
# CONFIG_NVME_TARGET_TCP is not set
#
# Misc devices
@ -2147,6 +2145,7 @@ CONFIG_SRAM_EXEC=y
CONFIG_VEXPRESS_SYSCFG=y
# CONFIG_PCI_ENDPOINT_TEST is not set
CONFIG_MISC_RTSX=m
# CONFIG_PVPANIC is not set
CONFIG_C2PORT=m
#
@ -2208,6 +2207,7 @@ CONFIG_ALTERA_STAPL=m
# VOP Driver
#
# CONFIG_ECHO is not set
CONFIG_MISC_ALCOR_PCI=m
CONFIG_MISC_RTSX_PCI=m
CONFIG_MISC_RTSX_USB=m
CONFIG_HAVE_IDE=y
@ -2221,7 +2221,6 @@ CONFIG_RAID_ATTRS=m
CONFIG_SCSI=m
CONFIG_SCSI_DMA=y
CONFIG_SCSI_NETLINK=y
# CONFIG_SCSI_MQ_DEFAULT is not set
# CONFIG_SCSI_PROC_FS is not set
#
@ -2569,7 +2568,7 @@ CONFIG_NET_DSA_BCM_SF2=m
# CONFIG_NET_DSA_LANTIQ_GSWIP is not set
# CONFIG_NET_DSA_MT7530 is not set
CONFIG_NET_DSA_MV88E6060=m
# CONFIG_MICROCHIP_KSZ is not set
# CONFIG_NET_DSA_MICROCHIP_KSZ9477 is not set
CONFIG_NET_DSA_MV88E6XXX=m
CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y
# CONFIG_NET_DSA_MV88E6XXX_PTP is not set
@ -2986,6 +2985,7 @@ CONFIG_USB_IPHETH=m
CONFIG_USB_SIERRA_NET=m
CONFIG_USB_VL600=m
CONFIG_USB_NET_CH9200=m
CONFIG_USB_NET_AQC111=m
CONFIG_WLAN=y
# CONFIG_WIRELESS_WDS is not set
CONFIG_WLAN_VENDOR_ADMTEK=y
@ -3217,9 +3217,10 @@ CONFIG_WLAN_VENDOR_ZYDAS=y
CONFIG_ZD1211RW=m
# CONFIG_ZD1211RW_DEBUG is not set
CONFIG_WLAN_VENDOR_QUANTENNA=y
# CONFIG_QTNFMAC_PEARL_PCIE is not set
# CONFIG_QTNFMAC_PCIE is not set
CONFIG_MAC80211_HWSIM=m
CONFIG_USB_NET_RNDIS_WLAN=m
CONFIG_VIRT_WIFI=m
#
# WiMAX Wireless Broadband devices
@ -3388,6 +3389,7 @@ CONFIG_TOUCHSCREEN_INEXIO=m
CONFIG_TOUCHSCREEN_MK712=m
CONFIG_TOUCHSCREEN_PENMOUNT=m
# CONFIG_TOUCHSCREEN_EDT_FT5X06 is not set
CONFIG_TOUCHSCREEN_RASPBERRYPI_FW=m
CONFIG_TOUCHSCREEN_TOUCHRIGHT=m
CONFIG_TOUCHSCREEN_TOUCHWIN=m
CONFIG_TOUCHSCREEN_TI_AM335X_TSC=m
@ -3504,6 +3506,7 @@ CONFIG_SERIO_ALTERA_PS2=m
# CONFIG_SERIO_PS2MULT is not set
# CONFIG_SERIO_ARC_PS2 is not set
# CONFIG_SERIO_APBPS2 is not set
CONFIG_SERIO_OLPC_APSP=m
CONFIG_SERIO_SUN4I_PS2=m
CONFIG_SERIO_GPIO_PS2=m
# CONFIG_USERIO is not set
@ -3595,6 +3598,7 @@ CONFIG_SERIAL_RP2_NR_UARTS=32
CONFIG_SERIAL_MCTRL_GPIO=y
# CONFIG_SERIAL_DEV_BUS is not set
CONFIG_TTY_PRINTK=m
CONFIG_TTY_PRINTK_LEVEL=6
# CONFIG_PRINTER is not set
# CONFIG_PPDEV is not set
CONFIG_HVC_DRIVER=y
@ -3728,6 +3732,7 @@ CONFIG_I2C_CROS_EC_TUNNEL=m
# CONFIG_I2C_DEBUG_CORE is not set
# CONFIG_I2C_DEBUG_ALGO is not set
# CONFIG_I2C_DEBUG_BUS is not set
# CONFIG_I3C is not set
CONFIG_SPI=y
# CONFIG_SPI_DEBUG is not set
CONFIG_SPI_MASTER=y
@ -3762,6 +3767,7 @@ CONFIG_SPI_ROCKCHIP=m
# CONFIG_SPI_SC18IS602 is not set
CONFIG_SPI_SUN4I=m
CONFIG_SPI_SUN6I=m
CONFIG_SPI_MXIC=m
CONFIG_SPI_TEGRA114=m
CONFIG_SPI_TEGRA20_SFLASH=m
# CONFIG_SPI_TEGRA20_SLINK is not set
@ -3831,6 +3837,7 @@ CONFIG_PINCTRL_SINGLE=y
# CONFIG_PINCTRL_SX150X is not set
CONFIG_PINCTRL_PALMAS=y
CONFIG_PINCTRL_RK805=m
# CONFIG_PINCTRL_OCELOT is not set
CONFIG_PINCTRL_BCM2835=y
CONFIG_PINCTRL_IMX=y
CONFIG_PINCTRL_IMX51=y
@ -3882,6 +3889,7 @@ CONFIG_GPIO_GENERIC=y
# CONFIG_GPIO_74XX_MMIO is not set
# CONFIG_GPIO_ALTERA is not set
CONFIG_GPIO_RASPBERRYPI_EXP=m
CONFIG_GPIO_CADENCE=m
# CONFIG_GPIO_DWAPB is not set
# CONFIG_GPIO_EXAR is not set
# CONFIG_GPIO_FTGPIO010 is not set
@ -3895,6 +3903,7 @@ CONFIG_GPIO_MVEBU=y
CONFIG_GPIO_MXC=y
CONFIG_GPIO_OMAP=y
CONFIG_GPIO_PL061=y
# CONFIG_GPIO_SAMA5D2_PIOBU is not set
# CONFIG_GPIO_SYSCON is not set
CONFIG_GPIO_TEGRA=y
# CONFIG_GPIO_TS4800 is not set
@ -4134,6 +4143,7 @@ CONFIG_SENSORS_NCT6775=m
# CONFIG_SENSORS_NCT7802 is not set
# CONFIG_SENSORS_NCT7904 is not set
# CONFIG_SENSORS_NPCM7XX is not set
# CONFIG_SENSORS_OCC_P8_I2C is not set
# CONFIG_SENSORS_PCF8591 is not set
# CONFIG_PMBUS is not set
CONFIG_SENSORS_PWM_FAN=m
@ -4209,10 +4219,6 @@ CONFIG_CPU_THERMAL=y
CONFIG_ROCKCHIP_THERMAL=m
CONFIG_ARMADA_THERMAL=y
#
# ACPI INT340X thermal drivers
#
#
# Broadcom thermal drivers
#
@ -4322,7 +4328,6 @@ CONFIG_MFD_CORE=y
CONFIG_MFD_AS3722=y
# CONFIG_PMIC_ADP5520 is not set
# CONFIG_MFD_AAT2870_CORE is not set
# CONFIG_MFD_AT91_USART is not set
# CONFIG_MFD_ATMEL_FLEXCOM is not set
# CONFIG_MFD_ATMEL_HLCDC is not set
# CONFIG_MFD_BCM590XX is not set
@ -4477,6 +4482,7 @@ CONFIG_REGULATOR_MAX77686=m
CONFIG_REGULATOR_MC13XXX_CORE=m
CONFIG_REGULATOR_MC13783=m
CONFIG_REGULATOR_MC13892=m
# CONFIG_REGULATOR_MCP16502 is not set
# CONFIG_REGULATOR_MT6311 is not set
CONFIG_REGULATOR_PALMAS=y
CONFIG_REGULATOR_PBIAS=m
@ -4537,6 +4543,7 @@ CONFIG_IR_PWM_TX=m
CONFIG_IR_SUNXI=m
# CONFIG_IR_SERIAL is not set
# CONFIG_IR_SIR is not set
CONFIG_RC_XBOX_DVD=m
CONFIG_MEDIA_SUPPORT=y
#
@ -4556,7 +4563,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y
CONFIG_VIDEO_V4L2=y
# CONFIG_VIDEO_ADV_DEBUG is not set
# CONFIG_VIDEO_FIXED_MINOR_RANGES is not set
# CONFIG_VIDEO_PCI_SKELETON is not set
CONFIG_VIDEO_TUNER=m
CONFIG_V4L2_MEM2MEM_DEV=m
CONFIG_V4L2_FWNODE=m
@ -4817,12 +4823,14 @@ CONFIG_VIDEO_CAFE_CCIC=m
CONFIG_VIDEO_CADENCE=y
CONFIG_VIDEO_CADENCE_CSI2RX=m
CONFIG_VIDEO_CADENCE_CSI2TX=m
CONFIG_VIDEO_ASPEED=m
# CONFIG_VIDEO_MUX is not set
CONFIG_VIDEO_OMAP3=m
# CONFIG_VIDEO_OMAP3_DEBUG is not set
# CONFIG_SOC_CAMERA is not set
# CONFIG_VIDEO_SAMSUNG_EXYNOS4_IS is not set
# CONFIG_VIDEO_XILINX is not set
CONFIG_VIDEO_SUN6I_CSI=m
# CONFIG_VIDEO_TI_CAL is not set
CONFIG_V4L_MEM2MEM_DRIVERS=y
# CONFIG_VIDEO_CODA is not set
@ -5323,6 +5331,16 @@ CONFIG_DRM_TILCDC=m
CONFIG_DRM_QXL=m
CONFIG_DRM_BOCHS=m
CONFIG_DRM_VIRTIO_GPU=m
CONFIG_DRM_MSM=m
# CONFIG_DRM_MSM_REGISTER_LOGGING is not set
# CONFIG_DRM_MSM_GPU_SUDO is not set
CONFIG_DRM_MSM_DSI=y
CONFIG_DRM_MSM_DSI_PLL=y
CONFIG_DRM_MSM_DSI_28NM_PHY=y
CONFIG_DRM_MSM_DSI_20NM_PHY=y
CONFIG_DRM_MSM_DSI_28NM_8960_PHY=y
CONFIG_DRM_MSM_DSI_14NM_PHY=y
CONFIG_DRM_MSM_DSI_10NM_PHY=y
# CONFIG_DRM_FSL_DCU is not set
# CONFIG_DRM_TEGRA is not set
# CONFIG_DRM_STM is not set
@ -5340,10 +5358,12 @@ CONFIG_DRM_PANEL_ILITEK_ILI9881C=m
# CONFIG_DRM_PANEL_JDI_LT070ME05000 is not set
# CONFIG_DRM_PANEL_SAMSUNG_LD9040 is not set
# CONFIG_DRM_PANEL_LG_LG4573 is not set
# CONFIG_DRM_PANEL_OLIMEX_LCD_OLINUXINO is not set
# CONFIG_DRM_PANEL_ORISETECH_OTM8009A is not set
# CONFIG_DRM_PANEL_PANASONIC_VVX10F034N00 is not set
CONFIG_DRM_PANEL_RASPBERRYPI_TOUCHSCREEN=m
# CONFIG_DRM_PANEL_RAYDIUM_RM68200 is not set
# CONFIG_DRM_PANEL_SAMSUNG_S6D16D0 is not set
# CONFIG_DRM_PANEL_SAMSUNG_S6E3HA2 is not set
# CONFIG_DRM_PANEL_SAMSUNG_S6E63J0X03 is not set
# CONFIG_DRM_PANEL_SAMSUNG_S6E8AA0 is not set
@ -5351,6 +5371,7 @@ CONFIG_DRM_PANEL_RASPBERRYPI_TOUCHSCREEN=m
# CONFIG_DRM_PANEL_SHARP_LQ101R1SX01 is not set
# CONFIG_DRM_PANEL_SHARP_LS043T1LE01 is not set
# CONFIG_DRM_PANEL_SITRONIX_ST7789V is not set
# CONFIG_DRM_PANEL_TRULY_NT35597_WQXGA is not set
CONFIG_DRM_BRIDGE=y
CONFIG_DRM_PANEL_BRIDGE=y
@ -5378,6 +5399,7 @@ CONFIG_DRM_DW_HDMI=m
# CONFIG_DRM_DW_HDMI_AHB_AUDIO is not set
# CONFIG_DRM_DW_HDMI_I2S_AUDIO is not set
CONFIG_DRM_DW_HDMI_CEC=m
CONFIG_DRM_DW_MIPI_DSI=m
# CONFIG_DRM_STI is not set
CONFIG_DRM_IMX=m
# CONFIG_DRM_IMX_PARALLEL_DISPLAY is not set
@ -5422,7 +5444,7 @@ CONFIG_FB_SYS_IMAGEBLIT=y
CONFIG_FB_SYS_FOPS=y
CONFIG_FB_DEFERRED_IO=y
CONFIG_FB_SVGALIB=m
CONFIG_FB_BACKLIGHT=y
CONFIG_FB_BACKLIGHT=m
CONFIG_FB_MODE_HELPERS=y
CONFIG_FB_TILEBLITTING=y
@ -5681,8 +5703,6 @@ CONFIG_SND_SOC_GENERIC_DMAENGINE_PCM=y
# CONFIG_SND_SOC_AMD_ACP is not set
# CONFIG_SND_ATMEL_SOC is not set
CONFIG_SND_BCM2835_SOC_I2S=m
# CONFIG_SND_EDMA_SOC is not set
CONFIG_SND_DAVINCI_SOC_MCASP=m
# CONFIG_SND_DESIGNWARE_I2S is not set
#
@ -5714,17 +5734,6 @@ CONFIG_SND_SOC_IMX_SPDIF=m
CONFIG_SND_SOC_IMX_MC13783=m
# CONFIG_SND_SOC_FSL_ASOC_CARD is not set
# CONFIG_SND_I2S_HI6210_I2S is not set
CONFIG_SND_OMAP_SOC=m
CONFIG_SND_SDMA_SOC=m
CONFIG_SND_OMAP_SOC_DMIC=m
CONFIG_SND_OMAP_SOC_MCBSP=m
CONFIG_SND_OMAP_SOC_MCPDM=m
# CONFIG_SND_OMAP_SOC_HDMI_AUDIO is not set
CONFIG_SND_OMAP_SOC_RX51=m
CONFIG_SND_OMAP_SOC_AM3517EVM=m
CONFIG_SND_OMAP_SOC_OMAP_TWL4030=m
CONFIG_SND_OMAP_SOC_OMAP_ABE_TWL6040=m
CONFIG_SND_OMAP_SOC_OMAP3_PANDORA=m
# CONFIG_SND_KIRKWOOD_SOC is not set
# CONFIG_SND_SOC_IMG is not set
CONFIG_SND_SOC_ROCKCHIP=m
@ -5765,6 +5774,30 @@ CONFIG_SND_SOC_TEGRA_ALC5632=m
CONFIG_SND_SOC_TEGRA_MAX98090=m
CONFIG_SND_SOC_TEGRA_RT5677=m
# CONFIG_SND_SOC_TEGRA_SGTL5000 is not set
#
# Audio support for Texas Instruments SoCs
#
CONFIG_SND_SOC_TI_EDMA_PCM=m
CONFIG_SND_SOC_TI_SDMA_PCM=m
#
# Texas Instruments DAI support for:
#
CONFIG_SND_SOC_DAVINCI_MCASP=m
CONFIG_SND_SOC_OMAP_DMIC=m
CONFIG_SND_SOC_OMAP_MCBSP=m
CONFIG_SND_SOC_OMAP_MCPDM=m
#
# Audio support for boards with Texas Instruments SoCs
#
CONFIG_SND_SOC_NOKIA_RX51=m
CONFIG_SND_SOC_OMAP3_PANDORA=m
CONFIG_SND_SOC_OMAP3_TWL4030=m
CONFIG_SND_SOC_OMAP_ABE_TWL6040=m
CONFIG_SND_SOC_OMAP_HDMI=m
# CONFIG_SND_SOC_XILINX_I2S is not set
# CONFIG_SND_SOC_XTFPGA_I2S is not set
# CONFIG_ZX_TDM is not set
CONFIG_SND_SOC_I2C_AND_SPI=m
@ -5778,6 +5811,7 @@ CONFIG_SND_SOC_I2C_AND_SPI=m
# CONFIG_SND_SOC_ADAU1761_SPI is not set
# CONFIG_SND_SOC_ADAU7002 is not set
# CONFIG_SND_SOC_AK4104 is not set
# CONFIG_SND_SOC_AK4118 is not set
# CONFIG_SND_SOC_AK4458 is not set
# CONFIG_SND_SOC_AK4554 is not set
# CONFIG_SND_SOC_AK4613 is not set
@ -6404,6 +6438,7 @@ CONFIG_USB_G_NOKIA=m
# CONFIG_USB_G_DBGP is not set
# CONFIG_USB_G_WEBCAM is not set
# CONFIG_TYPEC is not set
CONFIG_USB_ROLE_SWITCH=m
CONFIG_USB_LED_TRIG=y
CONFIG_USB_ULPI_BUS=m
CONFIG_UWB=m
@ -6444,6 +6479,7 @@ CONFIG_MMC_SDHCI_PXAV3=m
CONFIG_MMC_SDHCI_IPROC=m
CONFIG_MMC_OMAP=m
CONFIG_MMC_OMAP_HS=m
CONFIG_MMC_ALCOR=m
# CONFIG_MMC_MXC is not set
CONFIG_MMC_TIFM_SD=m
CONFIG_MMC_MVSDIO=m
@ -6471,6 +6507,7 @@ CONFIG_MMC_BCM2835=m
# CONFIG_MMC_MTK is not set
# CONFIG_MMC_SDHCI_XENON is not set
# CONFIG_MMC_SDHCI_OMAP is not set
CONFIG_MMC_SDHCI_AM654=m
CONFIG_MEMSTICK=m
# CONFIG_MEMSTICK_DEBUG is not set
@ -6562,6 +6599,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m
CONFIG_LEDS_TRIGGER_PANIC=y
# CONFIG_LEDS_TRIGGER_NETDEV is not set
# CONFIG_LEDS_TRIGGER_PATTERN is not set
# CONFIG_LEDS_TRIGGER_AUDIO is not set
CONFIG_ACCESSIBILITY=y
CONFIG_A11Y_BRAILLE_CONSOLE=y
CONFIG_INFINIBAND=m
@ -6890,7 +6928,6 @@ CONFIG_RTLWIFI_DEBUG_ST=y
#
# Resolver to digital converters
#
# CONFIG_AD2S90 is not set
# CONFIG_AD2S1210 is not set
# CONFIG_FB_SM750 is not set
# CONFIG_FB_XGI is not set
@ -6919,7 +6956,6 @@ CONFIG_SPEAKUP_SYNTH_DUMMY=m
# CONFIG_STAGING_BOARD is not set
# CONFIG_LTE_GDM724X is not set
# CONFIG_FIREWIRE_SERIAL is not set
# CONFIG_MTD_SPINAND_MT29F is not set
# CONFIG_GS_FPGABOOT is not set
# CONFIG_UNISYSSPAR is not set
# CONFIG_COMMON_CLK_XLNX_CLKWZRD is not set
@ -6987,6 +7023,8 @@ CONFIG_CLK_TWL6040=m
CONFIG_COMMON_CLK_PALMAS=m
# CONFIG_COMMON_CLK_PWM is not set
# CONFIG_COMMON_CLK_VC5 is not set
# CONFIG_COMMON_CLK_BD718XX is not set
CONFIG_MXC_CLK=y
CONFIG_MVEBU_CLK_COMMON=y
CONFIG_MVEBU_CLK_CPU=y
CONFIG_MVEBU_CLK_COREDIV=y
@ -7165,6 +7203,7 @@ CONFIG_OMAP_GPMC=y
# CONFIG_OMAP_GPMC_DEBUG is not set
CONFIG_TI_EMIF_SRAM=m
CONFIG_MVEBU_DEVBUS=y
CONFIG_PL353_SMC=y
CONFIG_SAMSUNG_MC=y
CONFIG_EXYNOS_SROM=y
CONFIG_TEGRA_MC=y
@ -7221,6 +7260,7 @@ CONFIG_MMA8452=m
#
# Analog to digital converters
#
# CONFIG_AD7124 is not set
# CONFIG_AD7266 is not set
# CONFIG_AD7291 is not set
# CONFIG_AD7298 is not set
@ -7230,6 +7270,7 @@ CONFIG_MMA8452=m
# CONFIG_AD7793 is not set
# CONFIG_AD7887 is not set
# CONFIG_AD7923 is not set
# CONFIG_AD7949 is not set
# CONFIG_AD799X is not set
CONFIG_AXP20X_ADC=m
CONFIG_AXP288_ADC=m
@ -7344,6 +7385,7 @@ CONFIG_IIO_ST_SENSORS_CORE=m
# CONFIG_MCP4922 is not set
# CONFIG_TI_DAC082S085 is not set
# CONFIG_TI_DAC5571 is not set
# CONFIG_TI_DAC7311 is not set
# CONFIG_VF610_DAC is not set
#
@ -7453,6 +7495,7 @@ CONFIG_SENSORS_TSL2563=m
# CONFIG_TSL4531 is not set
# CONFIG_US5182D is not set
# CONFIG_VCNL4000 is not set
# CONFIG_VCNL4035 is not set
# CONFIG_VEML6070 is not set
# CONFIG_VL6180 is not set
# CONFIG_ZOPT2201 is not set
@ -7471,6 +7514,8 @@ CONFIG_HID_SENSOR_MAGNETOMETER_3D=m
# CONFIG_IIO_ST_MAGN_3AXIS is not set
# CONFIG_SENSORS_HMC5843_I2C is not set
# CONFIG_SENSORS_HMC5843_SPI is not set
# CONFIG_SENSORS_RM3100_I2C is not set
# CONFIG_SENSORS_RM3100_SPI is not set
#
# Multiplexers
@ -7499,6 +7544,7 @@ CONFIG_HID_SENSOR_DEVICE_ROTATION=m
# CONFIG_MCP4018 is not set
# CONFIG_MCP4131 is not set
# CONFIG_MCP4531 is not set
# CONFIG_MCP41010 is not set
# CONFIG_TPL0102 is not set
#
@ -7542,6 +7588,7 @@ CONFIG_HID_SENSOR_PRESS=m
#
# Resolver to digital converters
#
# CONFIG_AD2S90 is not set
# CONFIG_AD2S1200 is not set
#
@ -7589,14 +7636,17 @@ CONFIG_ARM_GIC_V3=y
CONFIG_ARM_GIC_V3_ITS=y
CONFIG_ARM_GIC_V3_ITS_PCI=y
CONFIG_ARMADA_370_XP_IRQ=y
CONFIG_MADERA_IRQ=m
CONFIG_OMAP_IRQCHIP=y
# CONFIG_TS4800_IRQ is not set
CONFIG_IRQ_CROSSBAR=y
CONFIG_PARTITION_PERCPU=y
CONFIG_IMX_IRQSTEER=y
# CONFIG_IPACK_BUS is not set
CONFIG_ARCH_HAS_RESET_CONTROLLER=y
CONFIG_RESET_CONTROLLER=y
CONFIG_RESET_SIMPLE=y
CONFIG_RESET_SOCFPGA=y
CONFIG_RESET_SUNXI=y
# CONFIG_RESET_TI_SYSCON is not set
# CONFIG_FMC is not set
@ -7609,6 +7659,8 @@ CONFIG_PHY_SUN4I_USB=m
CONFIG_PHY_SUN9I_USB=m
# CONFIG_BCM_KONA_USB2_PHY is not set
# CONFIG_PHY_CADENCE_DP is not set
# CONFIG_PHY_CADENCE_SIERRA is not set
# CONFIG_PHY_FSL_IMX8MQ_USB is not set
CONFIG_ARMADA375_USBCLUSTER_PHY=y
CONFIG_PHY_MVEBU_CP110_COMPHY=m
# CONFIG_PHY_PXA_28NM_HSIC is not set
@ -7641,6 +7693,7 @@ CONFIG_OMAP_USB2=m
CONFIG_TI_PIPE3=m
CONFIG_PHY_TUSB1210=m
CONFIG_TWL4030_USB=m
CONFIG_PHY_TI_GMII_SEL=m
# CONFIG_POWERCAP is not set
# CONFIG_MCB is not set
@ -8072,6 +8125,7 @@ CONFIG_IMA_DEFAULT_HASH="sha256"
# CONFIG_IMA_WRITE_POLICY is not set
# CONFIG_IMA_READ_POLICY is not set
CONFIG_IMA_APPRAISE=y
# CONFIG_IMA_ARCH_POLICY is not set
# CONFIG_IMA_APPRAISE_BUILD_POLICY is not set
CONFIG_IMA_APPRAISE_BOOTPARAM=y
CONFIG_IMA_TRUSTED_KEYRING=y
@ -8154,6 +8208,8 @@ CONFIG_CRYPTO_OFB=m
CONFIG_CRYPTO_PCBC=m
CONFIG_CRYPTO_XTS=m
# CONFIG_CRYPTO_KEYWRAP is not set
CONFIG_CRYPTO_NHPOLY1305=m
CONFIG_CRYPTO_ADIANTUM=m
#
# Hash modes
@ -8183,6 +8239,7 @@ CONFIG_CRYPTO_SHA256=y
CONFIG_CRYPTO_SHA512=m
# CONFIG_CRYPTO_SHA3 is not set
# CONFIG_CRYPTO_SM3 is not set
CONFIG_CRYPTO_STREEBOG=m
CONFIG_CRYPTO_TGR192=m
CONFIG_CRYPTO_WP512=m
@ -8236,6 +8293,7 @@ CONFIG_CRYPTO_USER_API_HASH=m
CONFIG_CRYPTO_USER_API_SKCIPHER=m
CONFIG_CRYPTO_USER_API_RNG=m
CONFIG_CRYPTO_USER_API_AEAD=m
# CONFIG_CRYPTO_STATS is not set
CONFIG_CRYPTO_HASH_INFO=y
CONFIG_CRYPTO_HW=y
CONFIG_CRYPTO_DEV_MARVELL_CESA=m
@ -8274,6 +8332,7 @@ CONFIG_BINARY_PRINTF=y
# Library routines
#
CONFIG_RAID6_PQ=m
CONFIG_RAID6_PQ_BENCHMARK=y
CONFIG_BITREVERSE=y
CONFIG_HAVE_ARCH_BITREVERSE=y
CONFIG_RATIONAL=y
@ -8298,7 +8357,7 @@ CONFIG_CRC64=m
CONFIG_CRC7=m
CONFIG_LIBCRC32C=m
CONFIG_CRC8=m
CONFIG_XXHASH=m
CONFIG_XXHASH=y
CONFIG_AUDIT_GENERIC=y
# CONFIG_RANDOM32_SELFTEST is not set
CONFIG_ZLIB_INFLATE=y
@ -8340,9 +8399,9 @@ CONFIG_NEED_SG_DMA_LENGTH=y
CONFIG_NEED_DMA_MAP_STATE=y
CONFIG_ARCH_DMA_ADDR_T_64BIT=y
CONFIG_HAVE_GENERIC_DMA_COHERENT=y
CONFIG_DMA_DIRECT_OPS=y
CONFIG_DMA_VIRT_OPS=y
CONFIG_SWIOTLB=y
CONFIG_DMA_REMAP=y
CONFIG_SGL_ALLOC=y
CONFIG_CHECK_SIGNATURE=y
CONFIG_CPU_RMAP=y
@ -8366,7 +8425,6 @@ CONFIG_FONT_8x8=y
CONFIG_FONT_8x16=y
CONFIG_SG_SPLIT=y
CONFIG_SG_POOL=y
CONFIG_ARCH_HAS_SG_CHAIN=y
CONFIG_SBITMAP=y
# CONFIG_STRING_SELFTEST is not set
@ -8430,6 +8488,8 @@ CONFIG_ARCH_HAS_DEBUG_VIRTUAL=y
CONFIG_DEBUG_MEMORY_INIT=y
# CONFIG_DEBUG_PER_CPU_MAPS is not set
# CONFIG_DEBUG_HIGHMEM is not set
CONFIG_CC_HAS_KASAN_GENERIC=y
CONFIG_KASAN_STACK=1
CONFIG_ARCH_HAS_KCOV=y
CONFIG_CC_HAS_SANCOV_TRACE_PC=y
# CONFIG_KCOV is not set
@ -8533,6 +8593,7 @@ CONFIG_BLK_DEV_IO_TRACE=y
CONFIG_KPROBE_EVENTS=y
CONFIG_UPROBE_EVENTS=y
CONFIG_BPF_EVENTS=y
CONFIG_DYNAMIC_EVENTS=y
CONFIG_PROBE_EVENTS=y
CONFIG_DYNAMIC_FTRACE=y
CONFIG_DYNAMIC_FTRACE_WITH_REGS=y
@ -8595,7 +8656,6 @@ CONFIG_UNWINDER_FRAME_POINTER=y
# CONFIG_UNWINDER_ARM is not set
# CONFIG_DEBUG_USER is not set
# CONFIG_DEBUG_LL is not set
CONFIG_DEBUG_IMX_UART_PORT=1
CONFIG_DEBUG_LL_INCLUDE="mach/debug-macro.S"
CONFIG_UNCOMPRESS_INCLUDE="debug/uncompress.h"
# CONFIG_ARM_KPROBES_TEST is not set

418
gnu/packages/aux-files/linux-libre/4.20-arm64.conf → gnu/packages/aux-files/linux-libre/5.0-arm64.conf
View File

File diff suppressed because it is too large Load Diff

342
gnu/packages/aux-files/linux-libre/4.20-i686.conf → gnu/packages/aux-files/linux-libre/5.0-i686.conf
View File

@ -1,6 +1,6 @@
#
# Automatically generated file; DO NOT EDIT.
# Linux/x86 4.20.0-gnu Kernel Configuration
# Linux/x86 5.0.0-gnu Kernel Configuration
#
#
@ -9,6 +9,7 @@
CONFIG_CC_IS_GCC=y
CONFIG_GCC_VERSION=70400
CONFIG_CLANG_VERSION=0
CONFIG_CC_HAS_ASM_GOTO=y
CONFIG_IRQ_WORK=y
CONFIG_BUILDTIME_EXTABLE_SORT=y
CONFIG_THREAD_INFO_IN_TASK=y
@ -44,8 +45,6 @@ CONFIG_USELIB=y
CONFIG_AUDIT=y
CONFIG_HAVE_ARCH_AUDITSYSCALL=y
CONFIG_AUDITSYSCALL=y
CONFIG_AUDIT_WATCH=y
CONFIG_AUDIT_TREE=y
#
# IRQ subsystem
@ -272,7 +271,7 @@ CONFIG_X86_FEATURE_NAMES=y
CONFIG_X86_MPPARSE=y
# CONFIG_GOLDFISH is not set
CONFIG_RETPOLINE=y
# CONFIG_INTEL_RDT is not set
# CONFIG_X86_CPU_RESCTRL is not set
# CONFIG_X86_BIGSMP is not set
CONFIG_X86_EXTENDED_PLATFORM=y
# CONFIG_X86_GOLDFISH is not set
@ -302,6 +301,7 @@ CONFIG_XEN_SAVE_RESTORE=y
# CONFIG_XEN_DEBUG_FS is not set
CONFIG_XEN_PVH=y
CONFIG_KVM_GUEST=y
CONFIG_PVH=y
CONFIG_KVM_DEBUG_FS=y
# CONFIG_PARAVIRT_TIME_ACCOUNTING is not set
CONFIG_PARAVIRT_CLOCK=y
@ -473,6 +473,7 @@ CONFIG_PM_TRACE=y
CONFIG_PM_TRACE_RTC=y
CONFIG_PM_CLK=y
CONFIG_WQ_POWER_EFFICIENT_DEFAULT=y
# CONFIG_ENERGY_MODEL is not set
CONFIG_ARCH_SUPPORTS_ACPI=y
CONFIG_ACPI=y
CONFIG_ACPI_LEGACY_TABLES_LOOKUP=y
@ -595,7 +596,6 @@ CONFIG_INTEL_IDLE=y
#
# Bus options (PCI etc.)
#
CONFIG_PCI=y
# CONFIG_PCI_GOBIOS is not set
# CONFIG_PCI_GOMMCONFIG is not set
# CONFIG_PCI_GODIRECT is not set
@ -604,121 +604,16 @@ CONFIG_PCI_BIOS=y
CONFIG_PCI_DIRECT=y
CONFIG_PCI_MMCONFIG=y
CONFIG_PCI_XEN=y
CONFIG_PCI_DOMAINS=y
# CONFIG_PCI_CNB20LE_QUIRK is not set
CONFIG_PCIEPORTBUS=y
CONFIG_HOTPLUG_PCI_PCIE=y
CONFIG_PCIEAER=y
# CONFIG_PCIEAER_INJECT is not set
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
CONFIG_PCIEASPM_DEBUG=y
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_REALLOC_ENABLE_AUTO=y
CONFIG_PCI_STUB=m
# CONFIG_PCI_PF_STUB is not set
CONFIG_XEN_PCIDEV_FRONTEND=m
CONFIG_PCI_ATS=y
CONFIG_PCI_LOCKLESS_CONFIG=y
CONFIG_PCI_IOV=y
CONFIG_PCI_PRI=y
CONFIG_PCI_PASID=y
CONFIG_PCI_LABEL=y
CONFIG_HOTPLUG_PCI=y
CONFIG_HOTPLUG_PCI_COMPAQ=m
CONFIG_HOTPLUG_PCI_COMPAQ_NVRAM=y
CONFIG_HOTPLUG_PCI_IBM=m
CONFIG_HOTPLUG_PCI_ACPI=y
CONFIG_HOTPLUG_PCI_ACPI_IBM=m
CONFIG_HOTPLUG_PCI_CPCI=y
CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
CONFIG_HOTPLUG_PCI_SHPC=y
#
# PCI controller drivers
#
#
# Cadence PCIe controllers support
#
#
# DesignWare PCI Core Support
#
# CONFIG_PCIE_DW_PLAT_HOST is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
CONFIG_PCI_SW_SWITCHTEC=m
# CONFIG_ISA_BUS is not set
CONFIG_ISA_DMA_API=y
CONFIG_ISA=y
CONFIG_EISA=y
CONFIG_EISA_VLB_PRIMING=y
CONFIG_EISA_PCI_EISA=y
CONFIG_EISA_VIRTUAL_ROOT=y
CONFIG_EISA_NAMES=y
CONFIG_SCx200=m
CONFIG_SCx200HR_TIMER=m
CONFIG_ALIX=y
CONFIG_NET5501=y
CONFIG_GEOS=y
CONFIG_AMD_NB=y
CONFIG_PCCARD=m
CONFIG_PCMCIA=m
CONFIG_PCMCIA_LOAD_CIS=y
CONFIG_CARDBUS=y
#
# PC-card bridges
#
CONFIG_YENTA=m
CONFIG_YENTA_O2=y
CONFIG_YENTA_RICOH=y
CONFIG_YENTA_TI=y
CONFIG_YENTA_ENE_TUNE=y
CONFIG_YENTA_TOSHIBA=y
CONFIG_PD6729=m
CONFIG_I82092=m
CONFIG_I82365=m
CONFIG_TCIC=m
CONFIG_PCMCIA_PROBE=y
CONFIG_PCCARD_NONSTATIC=y
CONFIG_RAPIDIO=y
CONFIG_RAPIDIO_TSI721=m
CONFIG_RAPIDIO_DISC_TIMEOUT=30
# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set
CONFIG_RAPIDIO_DMA_ENGINE=y
# CONFIG_RAPIDIO_DEBUG is not set
CONFIG_RAPIDIO_ENUM_BASIC=m
CONFIG_RAPIDIO_CHMAN=m
CONFIG_RAPIDIO_MPORT_CDEV=m
#
# RapidIO Switch drivers
#
CONFIG_RAPIDIO_TSI57X=m
CONFIG_RAPIDIO_CPS_XX=m
CONFIG_RAPIDIO_TSI568=m
CONFIG_RAPIDIO_CPS_GEN2=m
CONFIG_RAPIDIO_RXS_GEN3=m
# CONFIG_X86_SYSFB is not set
#
@ -851,6 +746,7 @@ CONFIG_STACKPROTECTOR=y
CONFIG_STACKPROTECTOR_STRONG=y
CONFIG_HAVE_ARCH_WITHIN_STACK_FRAMES=y
CONFIG_HAVE_IRQ_TIME_ACCOUNTING=y
CONFIG_HAVE_MOVE_PMD=y
CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE=y
CONFIG_HAVE_ARCH_HUGE_VMAP=y
CONFIG_HAVE_MOD_ARCH_SPECIFIC=y
@ -913,7 +809,6 @@ CONFIG_BLK_DEV_THROTTLING=y
CONFIG_BLK_CMDLINE_PARSER=y
CONFIG_BLK_WBT=y
# CONFIG_BLK_CGROUP_IOLATENCY is not set
# CONFIG_BLK_WBT_SQ is not set
CONFIG_BLK_WBT_MQ=y
CONFIG_BLK_DEBUG_FS=y
CONFIG_BLK_DEBUG_FS_ZONED=y
@ -951,14 +846,6 @@ CONFIG_BLK_PM=y
#
# IO Schedulers
#
CONFIG_IOSCHED_NOOP=y
CONFIG_IOSCHED_DEADLINE=y
CONFIG_IOSCHED_CFQ=y
CONFIG_CFQ_GROUP_IOSCHED=y
CONFIG_DEFAULT_DEADLINE=y
# CONFIG_DEFAULT_CFQ is not set
# CONFIG_DEFAULT_NOOP is not set
CONFIG_DEFAULT_IOSCHED="deadline"
CONFIG_MQ_IOSCHED_DEADLINE=m
CONFIG_MQ_IOSCHED_KYBER=m
CONFIG_IOSCHED_BFQ=m
@ -1047,6 +934,7 @@ CONFIG_ARCH_HAS_PTE_SPECIAL=y
CONFIG_NET=y
CONFIG_NET_INGRESS=y
CONFIG_NET_EGRESS=y
CONFIG_SKB_EXTENSIONS=y
#
# Networking options
@ -1215,9 +1103,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m
CONFIG_NETFILTER_NETLINK_GLUE_CT=y
CONFIG_NF_NAT=m
CONFIG_NF_NAT_NEEDED=y
CONFIG_NF_NAT_PROTO_DCCP=y
CONFIG_NF_NAT_PROTO_UDPLITE=y
CONFIG_NF_NAT_PROTO_SCTP=y
CONFIG_NF_NAT_AMANDA=m
CONFIG_NF_NAT_FTP=m
CONFIG_NF_NAT_IRC=m
@ -1423,7 +1308,6 @@ CONFIG_NF_REJECT_IPV4=m
CONFIG_NF_NAT_IPV4=m
CONFIG_NF_NAT_MASQUERADE_IPV4=y
CONFIG_NF_NAT_SNMP_BASIC=m
CONFIG_NF_NAT_PROTO_GRE=m
CONFIG_NF_NAT_PPTP=m
CONFIG_NF_NAT_H323=m
CONFIG_IP_NF_IPTABLES=m
@ -1566,6 +1450,7 @@ CONFIG_NET_DSA_TAG_DSA=y
CONFIG_NET_DSA_TAG_EDSA=y
CONFIG_NET_DSA_TAG_GSWIP=y
CONFIG_NET_DSA_TAG_KSZ=y
CONFIG_NET_DSA_TAG_KSZ9477=y
CONFIG_NET_DSA_TAG_LAN9303=y
CONFIG_NET_DSA_TAG_MTK=y
CONFIG_NET_DSA_TAG_TRAILER=y
@ -1996,6 +1881,115 @@ CONFIG_HAVE_EBPF_JIT=y
#
# Device Drivers
#
CONFIG_HAVE_EISA=y
CONFIG_EISA=y
CONFIG_EISA_VLB_PRIMING=y
CONFIG_EISA_PCI_EISA=y
CONFIG_EISA_VIRTUAL_ROOT=y
CONFIG_EISA_NAMES=y
CONFIG_HAVE_PCI=y
CONFIG_PCI=y
CONFIG_PCI_DOMAINS=y
CONFIG_PCIEPORTBUS=y
CONFIG_HOTPLUG_PCI_PCIE=y
CONFIG_PCIEAER=y
# CONFIG_PCIEAER_INJECT is not set
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
CONFIG_PCIEASPM_DEBUG=y
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_REALLOC_ENABLE_AUTO=y
CONFIG_PCI_STUB=m
# CONFIG_PCI_PF_STUB is not set
CONFIG_XEN_PCIDEV_FRONTEND=m
CONFIG_PCI_ATS=y
CONFIG_PCI_LOCKLESS_CONFIG=y
CONFIG_PCI_IOV=y
CONFIG_PCI_PRI=y
CONFIG_PCI_PASID=y
CONFIG_PCI_LABEL=y
CONFIG_HOTPLUG_PCI=y
CONFIG_HOTPLUG_PCI_COMPAQ=m
CONFIG_HOTPLUG_PCI_COMPAQ_NVRAM=y
CONFIG_HOTPLUG_PCI_IBM=m
CONFIG_HOTPLUG_PCI_ACPI=y
CONFIG_HOTPLUG_PCI_ACPI_IBM=m
CONFIG_HOTPLUG_PCI_CPCI=y
CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
CONFIG_HOTPLUG_PCI_SHPC=y
#
# PCI controller drivers
#
#
# Cadence PCIe controllers support
#
#
# DesignWare PCI Core Support
#
# CONFIG_PCIE_DW_PLAT_HOST is not set
# CONFIG_PCI_MESON is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
CONFIG_PCI_SW_SWITCHTEC=m
CONFIG_PCCARD=m
CONFIG_PCMCIA=m
CONFIG_PCMCIA_LOAD_CIS=y
CONFIG_CARDBUS=y
#
# PC-card bridges
#
CONFIG_YENTA=m
CONFIG_YENTA_O2=y
CONFIG_YENTA_RICOH=y
CONFIG_YENTA_TI=y
CONFIG_YENTA_ENE_TUNE=y
CONFIG_YENTA_TOSHIBA=y
CONFIG_PD6729=m
CONFIG_I82092=m
CONFIG_I82365=m
CONFIG_TCIC=m
CONFIG_PCMCIA_PROBE=y
CONFIG_PCCARD_NONSTATIC=y
CONFIG_RAPIDIO=y
CONFIG_RAPIDIO_TSI721=m
CONFIG_RAPIDIO_DISC_TIMEOUT=30
# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set
CONFIG_RAPIDIO_DMA_ENGINE=y
# CONFIG_RAPIDIO_DEBUG is not set
CONFIG_RAPIDIO_ENUM_BASIC=m
CONFIG_RAPIDIO_CHMAN=m
CONFIG_RAPIDIO_MPORT_CDEV=m
#
# RapidIO Switch drivers
#
CONFIG_RAPIDIO_TSI57X=m
CONFIG_RAPIDIO_CPS_XX=m
CONFIG_RAPIDIO_TSI568=m
CONFIG_RAPIDIO_CPS_GEN2=m
CONFIG_RAPIDIO_RXS_GEN3=m
#
# Generic Driver Options
@ -2046,16 +2040,16 @@ CONFIG_GNSS_SIRF_SERIAL=m
CONFIG_GNSS_UBX_SERIAL=m
CONFIG_MTD=m
# CONFIG_MTD_TESTS is not set
CONFIG_MTD_REDBOOT_PARTS=m
CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1
# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set
# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set
CONFIG_MTD_CMDLINE_PARTS=m
CONFIG_MTD_AR7_PARTS=m
#
# Partition parsers
#
CONFIG_MTD_REDBOOT_PARTS=m
CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1
# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set
# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set
#
# User Modules And Translation Layers
@ -2100,6 +2094,7 @@ CONFIG_MTD_ABSENT=m
CONFIG_MTD_COMPLEX_MAPPINGS=y
CONFIG_MTD_PHYSMAP=m
# CONFIG_MTD_PHYSMAP_COMPAT is not set
# CONFIG_MTD_PHYSMAP_GPIO_ADDR is not set
CONFIG_MTD_SBC_GXX=m
CONFIG_MTD_SCx200_DOCFLASH=m
CONFIG_MTD_AMD76XROM=m
@ -2112,10 +2107,8 @@ CONFIG_MTD_L440GX=m
CONFIG_MTD_PCI=m
CONFIG_MTD_PCMCIA=m
# CONFIG_MTD_PCMCIA_ANONYMOUS is not set
CONFIG_MTD_GPIO_ADDR=m
CONFIG_MTD_INTEL_VR_NOR=m
CONFIG_MTD_PLATRAM=m
CONFIG_MTD_LATCH_ADDR=m
#
# Self-contained MTD device drivers
@ -2275,11 +2268,13 @@ CONFIG_BLK_DEV_NVME=y
CONFIG_NVME_FABRICS=m
CONFIG_NVME_RDMA=m
CONFIG_NVME_FC=m
CONFIG_NVME_TCP=m
CONFIG_NVME_TARGET=m
CONFIG_NVME_TARGET_LOOP=m
CONFIG_NVME_TARGET_RDMA=m
CONFIG_NVME_TARGET_FC=m
CONFIG_NVME_TARGET_FCLOOP=m
CONFIG_NVME_TARGET_TCP=m
#
# Misc devices
@ -2314,6 +2309,7 @@ CONFIG_LATTICE_ECP3_CONFIG=m
CONFIG_SRAM=y
# CONFIG_PCI_ENDPOINT_TEST is not set
CONFIG_MISC_RTSX=m
CONFIG_PVPANIC=m
CONFIG_C2PORT=m
CONFIG_C2PORT_DURAMAR_2150=m
@ -2380,6 +2376,7 @@ CONFIG_VMWARE_VMCI=m
#
CONFIG_VHOST_RING=m
CONFIG_ECHO=m
CONFIG_MISC_ALCOR_PCI=m
CONFIG_MISC_RTSX_PCI=m
CONFIG_MISC_RTSX_USB=m
CONFIG_HAVE_IDE=y
@ -2393,7 +2390,6 @@ CONFIG_RAID_ATTRS=m
CONFIG_SCSI=y
CONFIG_SCSI_DMA=y
CONFIG_SCSI_NETLINK=y
# CONFIG_SCSI_MQ_DEFAULT is not set
CONFIG_SCSI_PROC_FS=y
#
@ -2475,6 +2471,7 @@ CONFIG_SCSI_UFSHCD=m
CONFIG_SCSI_UFSHCD_PCI=m
# CONFIG_SCSI_UFS_DWC_TC_PCI is not set
CONFIG_SCSI_UFSHCD_PLATFORM=m
CONFIG_SCSI_UFS_CDNS_PLATFORM=m
# CONFIG_SCSI_UFS_DWC_TC_PLATFORM is not set
# CONFIG_SCSI_UFS_BSG is not set
CONFIG_SCSI_HPTIOP=m
@ -2830,8 +2827,9 @@ CONFIG_NET_DSA_BCM_SF2=m
CONFIG_NET_DSA_LANTIQ_GSWIP=m
CONFIG_NET_DSA_MT7530=m
CONFIG_NET_DSA_MV88E6060=m
CONFIG_MICROCHIP_KSZ=m
CONFIG_MICROCHIP_KSZ_SPI_DRIVER=m
CONFIG_NET_DSA_MICROCHIP_KSZ_COMMON=m
CONFIG_NET_DSA_MICROCHIP_KSZ9477=m
CONFIG_NET_DSA_MICROCHIP_KSZ9477_SPI=m
CONFIG_NET_DSA_MV88E6XXX=m
CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y
# CONFIG_NET_DSA_MV88E6XXX_PTP is not set
@ -3261,6 +3259,7 @@ CONFIG_USB_IPHETH=m
CONFIG_USB_SIERRA_NET=m
CONFIG_USB_VL600=m
CONFIG_USB_NET_CH9200=m
CONFIG_USB_NET_AQC111=m
CONFIG_WLAN=y
# CONFIG_WIRELESS_WDS is not set
CONFIG_WLAN_VENDOR_ADMTEK=y
@ -3522,11 +3521,12 @@ CONFIG_ZD1211RW=m
# CONFIG_ZD1211RW_DEBUG is not set
CONFIG_WLAN_VENDOR_QUANTENNA=y
CONFIG_QTNFMAC=m
CONFIG_QTNFMAC_PEARL_PCIE=m
CONFIG_QTNFMAC_PCIE=m
CONFIG_PCMCIA_RAYCS=m
CONFIG_PCMCIA_WL3501=m
CONFIG_MAC80211_HWSIM=m
CONFIG_USB_NET_RNDIS_WLAN=m
CONFIG_VIRT_WIFI=m
#
# WiMAX Wireless Broadband devices
@ -3686,13 +3686,6 @@ CONFIG_ISDN_DRV_AVMB1_B1PCMCIA=m
CONFIG_ISDN_DRV_AVMB1_AVM_CS=m
CONFIG_ISDN_DRV_AVMB1_T1PCI=m
CONFIG_ISDN_DRV_AVMB1_C4=m
CONFIG_CAPI_EICON=y
CONFIG_ISDN_DIVAS=m
CONFIG_ISDN_DIVAS_BRIPCI=y
CONFIG_ISDN_DIVAS_PRIPCI=y
CONFIG_ISDN_DIVAS_DIVACAPI=m
CONFIG_ISDN_DIVAS_USERIDI=m
CONFIG_ISDN_DIVAS_MAINT=m
CONFIG_ISDN_DRV_GIGASET=m
# CONFIG_GIGASET_CAPI is not set
CONFIG_GIGASET_I4L=y
@ -4040,6 +4033,7 @@ CONFIG_SERIO_RAW=m
CONFIG_SERIO_ALTERA_PS2=m
CONFIG_SERIO_PS2MULT=m
CONFIG_SERIO_ARC_PS2=m
CONFIG_SERIO_OLPC_APSP=m
CONFIG_HYPERV_KEYBOARD=m
CONFIG_SERIO_GPIO_PS2=m
CONFIG_USERIO=m
@ -4146,6 +4140,7 @@ CONFIG_SERIAL_MEN_Z135=m
CONFIG_SERIAL_DEV_BUS=y
CONFIG_SERIAL_DEV_CTRL_TTYPORT=y
CONFIG_TTY_PRINTK=y
CONFIG_TTY_PRINTK_LEVEL=6
CONFIG_PRINTER=m
# CONFIG_LP_CONSOLE is not set
CONFIG_PPDEV=m
@ -4315,6 +4310,9 @@ CONFIG_I2C_SLAVE_EEPROM=m
# CONFIG_I2C_DEBUG_CORE is not set
# CONFIG_I2C_DEBUG_ALGO is not set
# CONFIG_I2C_DEBUG_BUS is not set
CONFIG_I3C=m
CONFIG_CDNS_I3C_MASTER=m
CONFIG_DW_I3C_MASTER=m
CONFIG_SPI=y
# CONFIG_SPI_DEBUG is not set
CONFIG_SPI_MASTER=y
@ -4340,6 +4338,7 @@ CONFIG_SPI_PXA2XX=m
CONFIG_SPI_PXA2XX_PCI=m
CONFIG_SPI_ROCKCHIP=m
CONFIG_SPI_SC18IS602=m
CONFIG_SPI_MXIC=m
CONFIG_SPI_TOPCLIFF_PCH=m
CONFIG_SPI_XCOMM=m
# CONFIG_SPI_XILINX is not set
@ -4713,6 +4712,7 @@ CONFIG_SENSORS_NCT6775=m
CONFIG_SENSORS_NCT7802=m
CONFIG_SENSORS_NCT7904=m
CONFIG_SENSORS_NPCM7XX=m
# CONFIG_SENSORS_OCC_P8_I2C is not set
CONFIG_SENSORS_PCF8591=m
CONFIG_PMBUS=m
CONFIG_SENSORS_PMBUS=m
@ -4806,6 +4806,10 @@ CONFIG_THERMAL_GOV_POWER_ALLOCATOR=y
CONFIG_CLOCK_THERMAL=y
CONFIG_DEVFREQ_THERMAL=y
CONFIG_THERMAL_EMULATION=y
#
# Intel thermal drivers
#
CONFIG_INTEL_POWERCLAMP=m
CONFIG_X86_PKG_TEMP_THERMAL=m
CONFIG_INTEL_SOC_DTS_IOSF_CORE=m
@ -4880,6 +4884,7 @@ CONFIG_SBC7240_WDT=m
CONFIG_CPU5_WDT=m
CONFIG_SMSC_SCH311X_WDT=m
CONFIG_SMSC37B787_WDT=m
CONFIG_TQMX86_WDT=m
CONFIG_VIA_WDT=m
CONFIG_W83627HF_WDT=m
CONFIG_W83877F_WDT=m
@ -4948,7 +4953,6 @@ CONFIG_MFD_CS5535=m
CONFIG_MFD_AS3711=y
CONFIG_PMIC_ADP5520=y
CONFIG_MFD_AAT2870_CORE=y
CONFIG_MFD_AT91_USART=m
CONFIG_MFD_BCM590XX=m
CONFIG_MFD_BD9571MWV=m
CONFIG_MFD_AXP20X=m
@ -5183,6 +5187,7 @@ CONFIG_RC_LOOPBACK=m
CONFIG_IR_SERIAL=m
CONFIG_IR_SERIAL_TRANSMITTER=y
CONFIG_IR_SIR=m
CONFIG_RC_XBOX_DVD=m
CONFIG_MEDIA_SUPPORT=m
#
@ -5203,7 +5208,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y
CONFIG_VIDEO_V4L2=m
# CONFIG_VIDEO_ADV_DEBUG is not set
# CONFIG_VIDEO_FIXED_MINOR_RANGES is not set
# CONFIG_VIDEO_PCI_SKELETON is not set
CONFIG_VIDEO_TUNER=m
CONFIG_V4L2_MEM2MEM_DEV=m
CONFIG_V4L2_FLASH_LED_CLASS=m
@ -5472,6 +5476,7 @@ CONFIG_VIDEO_VIA_CAMERA=m
CONFIG_VIDEO_CADENCE=y
CONFIG_VIDEO_CADENCE_CSI2RX=m
CONFIG_VIDEO_CADENCE_CSI2TX=m
CONFIG_VIDEO_ASPEED=m
CONFIG_SOC_CAMERA=m
CONFIG_SOC_CAMERA_PLATFORM=m
CONFIG_V4L_MEM2MEM_DRIVERS=y
@ -5487,6 +5492,8 @@ CONFIG_VIDEO_VICODEC=m
CONFIG_DVB_PLATFORM_DRIVERS=y
CONFIG_CEC_PLATFORM_DRIVERS=y
CONFIG_VIDEO_CROS_EC_CEC=m
CONFIG_VIDEO_SECO_CEC=m
# CONFIG_VIDEO_SECO_RC is not set
CONFIG_SDR_PLATFORM_DRIVERS=y
#
@ -6024,7 +6031,7 @@ CONFIG_FB_SYS_FOPS=m
CONFIG_FB_DEFERRED_IO=y
CONFIG_FB_HECUBA=m
CONFIG_FB_SVGALIB=m
CONFIG_FB_BACKLIGHT=y
CONFIG_FB_BACKLIGHT=m
CONFIG_FB_MODE_HELPERS=y
CONFIG_FB_TILEBLITTING=y
@ -6425,6 +6432,7 @@ CONFIG_SND_SOC_ACPI=m
CONFIG_SND_SOC_AMD_ACP=m
CONFIG_SND_SOC_AMD_CZ_DA7219MX98357_MACH=m
CONFIG_SND_SOC_AMD_CZ_RT5645_MACH=m
CONFIG_SND_SOC_AMD_ACP3x=m
CONFIG_SND_ATMEL_SOC=m
CONFIG_SND_DESIGNWARE_I2S=m
# CONFIG_SND_DESIGNWARE_PCM is not set
@ -6456,6 +6464,13 @@ CONFIG_SND_SST_ATOM_HIFI2_PLATFORM=m
CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_PCI=m
CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_ACPI=m
CONFIG_SND_SOC_INTEL_SKYLAKE=m
CONFIG_SND_SOC_INTEL_SKL=m
CONFIG_SND_SOC_INTEL_APL=m
CONFIG_SND_SOC_INTEL_KBL=m
CONFIG_SND_SOC_INTEL_GLK=m
CONFIG_SND_SOC_INTEL_CNL=m
CONFIG_SND_SOC_INTEL_CFL=m
CONFIG_SND_SOC_INTEL_SKYLAKE_FAMILY=m
CONFIG_SND_SOC_INTEL_SKYLAKE_SSP_CLK=m
CONFIG_SND_SOC_INTEL_SKYLAKE_HDAUDIO_CODEC=y
CONFIG_SND_SOC_INTEL_SKYLAKE_COMMON=m
@ -6482,12 +6497,14 @@ CONFIG_SND_SOC_INTEL_KBL_RT5663_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_RT5663_RT5514_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98357A_MACH=m
CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_RT5660_MACH=m
CONFIG_SND_SOC_INTEL_GLK_RT5682_MAX98357A_MACH=m
CONFIG_SND_SOC_INTEL_SKL_HDA_DSP_GENERIC_MACH=m
#
# STMicroelectronics STM32 SOC audio support
#
CONFIG_SND_SOC_XILINX_I2S=m
CONFIG_SND_SOC_XTFPGA_I2S=m
CONFIG_ZX_TDM=m
CONFIG_SND_SOC_I2C_AND_SPI=m
@ -6504,6 +6521,7 @@ CONFIG_SND_SOC_ADAU1761_I2C=m
CONFIG_SND_SOC_ADAU1761_SPI=m
CONFIG_SND_SOC_ADAU7002=m
CONFIG_SND_SOC_AK4104=m
CONFIG_SND_SOC_AK4118=m
CONFIG_SND_SOC_AK4458=m
CONFIG_SND_SOC_AK4554=m
CONFIG_SND_SOC_AK4613=m
@ -6586,6 +6604,7 @@ CONFIG_SND_SOC_RT5631=m
CONFIG_SND_SOC_RT5640=m
CONFIG_SND_SOC_RT5645=m
CONFIG_SND_SOC_RT5651=m
CONFIG_SND_SOC_RT5660=m
CONFIG_SND_SOC_RT5663=m
CONFIG_SND_SOC_RT5670=m
CONFIG_SND_SOC_RT5677=m
@ -7170,10 +7189,10 @@ CONFIG_TYPEC_MUX_PI3USB30532=m
# USB Type-C Alternate Mode drivers
#
CONFIG_TYPEC_DP_ALTMODE=m
CONFIG_USB_ROLE_SWITCH=m
CONFIG_USB_ROLES_INTEL_XHCI=m
CONFIG_USB_LED_TRIG=y
CONFIG_USB_ULPI_BUS=m
CONFIG_USB_ROLE_SWITCH=m
CONFIG_UWB=m
CONFIG_UWB_HWA=m
CONFIG_UWB_WHCI=m
@ -7195,6 +7214,7 @@ CONFIG_MMC_SDHCI_ACPI=m
CONFIG_MMC_SDHCI_PLTFM=m
CONFIG_MMC_SDHCI_F_SDH30=m
CONFIG_MMC_WBSD=m
CONFIG_MMC_ALCOR=m
CONFIG_MMC_TIFM_SD=m
CONFIG_MMC_SPI=m
CONFIG_MMC_SDRICOH_CS=m
@ -7311,6 +7331,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m
CONFIG_LEDS_TRIGGER_PANIC=y
CONFIG_LEDS_TRIGGER_NETDEV=m
CONFIG_LEDS_TRIGGER_PATTERN=m
CONFIG_LEDS_TRIGGER_AUDIO=m
# CONFIG_ACCESSIBILITY is not set
CONFIG_INFINIBAND=m
CONFIG_INFINIBAND_USER_MAD=m
@ -7620,6 +7641,7 @@ CONFIG_XEN_AUTO_XLATE=y
CONFIG_XEN_ACPI=y
CONFIG_XEN_SYMS=y
CONFIG_XEN_HAVE_VPMU=y
CONFIG_XEN_FRONT_PGDIR_SHBUF=m
CONFIG_STAGING=y
CONFIG_PRISM2_USB=m
CONFIG_COMEDI=m
@ -7833,7 +7855,6 @@ CONFIG_ADE7854_SPI=m
#
# Resolver to digital converters
#
CONFIG_AD2S90=m
CONFIG_AD2S1210=m
CONFIG_FB_SM750=m
CONFIG_FB_XGI=m
@ -7869,6 +7890,7 @@ CONFIG_VIDEO_ZORAN_DC10=m
CONFIG_VIDEO_ZORAN_LML33=m
CONFIG_VIDEO_ZORAN_LML33R10=m
CONFIG_VIDEO_ZORAN_AVS6EYES=m
# CONFIG_VIDEO_IPU3_IMGU is not set
#
# Android
@ -7877,8 +7899,6 @@ CONFIG_LTE_GDM724X=m
CONFIG_FIREWIRE_SERIAL=m
CONFIG_FWTTY_MAX_TOTAL_PORTS=64
CONFIG_FWTTY_MAX_CARD_PORTS=32
CONFIG_MTD_SPINAND_MT29F=m
CONFIG_MTD_SPINAND_ONDIEECC=y
CONFIG_GS_FPGABOOT=m
# CONFIG_UNISYSSPAR is not set
CONFIG_FB_TFT=m
@ -8024,7 +8044,6 @@ CONFIG_SAMSUNG_Q10=m
CONFIG_APPLE_GMUX=m
CONFIG_INTEL_RST=m
CONFIG_INTEL_SMARTCONNECT=m
CONFIG_PVPANIC=m
CONFIG_INTEL_PMC_IPC=m
CONFIG_INTEL_BXTWC_PMIC_TMU=m
CONFIG_SURFACE_PRO3_BUTTON=m
@ -8035,6 +8054,7 @@ CONFIG_INTEL_PUNIT_IPC=m
CONFIG_INTEL_CHTDC_TI_PWRBTN=m
CONFIG_I2C_MULTI_INSTANTIATE=m
CONFIG_INTEL_ATOMISP2_PM=m
# CONFIG_HUAWEI_WMI is not set
CONFIG_PMC_ATOM=y
CONFIG_CHROME_PLATFORMS=y
CONFIG_CHROMEOS_LAPTOP=m
@ -8232,6 +8252,7 @@ CONFIG_STK8BA50=m
# Analog to digital converters
#
CONFIG_AD_SIGMA_DELTA=m
CONFIG_AD7124=m
CONFIG_AD7266=m
CONFIG_AD7291=m
CONFIG_AD7298=m
@ -8241,6 +8262,7 @@ CONFIG_AD7791=m
CONFIG_AD7793=m
CONFIG_AD7887=m
CONFIG_AD7923=m
CONFIG_AD7949=m
CONFIG_AD799X=m
CONFIG_AXP20X_ADC=m
CONFIG_AXP288_ADC=m
@ -8359,6 +8381,7 @@ CONFIG_MCP4725=m
CONFIG_MCP4922=m
CONFIG_TI_DAC082S085=m
CONFIG_TI_DAC5571=m
CONFIG_TI_DAC7311=m
#
# IIO dummy driver
@ -8487,6 +8510,7 @@ CONFIG_TSL2772=m
CONFIG_TSL4531=m
CONFIG_US5182D=m
CONFIG_VCNL4000=m
CONFIG_VCNL4035=m
CONFIG_VEML6070=m
CONFIG_VL6180=m
CONFIG_ZOPT2201=m
@ -8508,6 +8532,9 @@ CONFIG_IIO_ST_MAGN_SPI_3AXIS=m
CONFIG_SENSORS_HMC5843=m
CONFIG_SENSORS_HMC5843_I2C=m
CONFIG_SENSORS_HMC5843_SPI=m
CONFIG_SENSORS_RM3100=m
CONFIG_SENSORS_RM3100_I2C=m
CONFIG_SENSORS_RM3100_SPI=m
#
# Multiplexers
@ -8537,6 +8564,7 @@ CONFIG_MAX5487=m
CONFIG_MCP4018=m
CONFIG_MCP4131=m
CONFIG_MCP4531=m
CONFIG_MCP41010=m
CONFIG_TPL0102=m
#
@ -8590,6 +8618,7 @@ CONFIG_VL53L0X_I2C=m
#
# Resolver to digital converters
#
CONFIG_AD2S90=m
CONFIG_AD2S1200=m
#
@ -8644,6 +8673,7 @@ CONFIG_PWM_TWL_LED=m
# IRQ chip support
#
CONFIG_ARM_GIC_MAX_NR=1
CONFIG_MADERA_IRQ=m
CONFIG_IPACK_BUS=m
CONFIG_BOARD_TPCI200=m
CONFIG_SERIAL_IPOCTAL=m
@ -8690,6 +8720,7 @@ CONFIG_ND_BLK=m
CONFIG_ND_CLAIM=y
CONFIG_ND_BTT=m
CONFIG_BTT=y
CONFIG_NVDIMM_KEYS=y
CONFIG_DAX_DRIVER=y
CONFIG_DAX=y
CONFIG_DEV_DAX=m
@ -9156,6 +9187,7 @@ CONFIG_IMA_DEFAULT_HASH="sha1"
# CONFIG_IMA_WRITE_POLICY is not set
# CONFIG_IMA_READ_POLICY is not set
CONFIG_IMA_APPRAISE=y
# CONFIG_IMA_ARCH_POLICY is not set
# CONFIG_IMA_APPRAISE_BUILD_POLICY is not set
CONFIG_IMA_APPRAISE_BOOTPARAM=y
CONFIG_IMA_TRUSTED_KEYRING=y
@ -9245,6 +9277,8 @@ CONFIG_CRYPTO_OFB=m
CONFIG_CRYPTO_PCBC=m
CONFIG_CRYPTO_XTS=m
CONFIG_CRYPTO_KEYWRAP=m
CONFIG_CRYPTO_NHPOLY1305=m
CONFIG_CRYPTO_ADIANTUM=m
#
# Hash modes
@ -9276,6 +9310,7 @@ CONFIG_CRYPTO_SHA256=y
CONFIG_CRYPTO_SHA512=m
CONFIG_CRYPTO_SHA3=m
CONFIG_CRYPTO_SM3=m
CONFIG_CRYPTO_STREEBOG=m
CONFIG_CRYPTO_TGR192=m
CONFIG_CRYPTO_WP512=m
@ -9333,6 +9368,7 @@ CONFIG_CRYPTO_USER_API_HASH=m
CONFIG_CRYPTO_USER_API_SKCIPHER=m
CONFIG_CRYPTO_USER_API_RNG=m
CONFIG_CRYPTO_USER_API_AEAD=m
# CONFIG_CRYPTO_STATS is not set
CONFIG_CRYPTO_HASH_INFO=y
CONFIG_CRYPTO_HW=y
CONFIG_CRYPTO_DEV_PADLOCK=y
@ -9378,6 +9414,7 @@ CONFIG_BINARY_PRINTF=y
# Library routines
#
CONFIG_RAID6_PQ=m
CONFIG_RAID6_PQ_BENCHMARK=y
CONFIG_BITREVERSE=y
CONFIG_RATIONAL=y
CONFIG_GENERIC_STRNCPY_FROM_USER=y
@ -9402,7 +9439,7 @@ CONFIG_CRC64=m
CONFIG_CRC7=m
CONFIG_LIBCRC32C=m
CONFIG_CRC8=m
CONFIG_XXHASH=m
CONFIG_XXHASH=y
CONFIG_AUDIT_GENERIC=y
# CONFIG_RANDOM32_SELFTEST is not set
CONFIG_842_COMPRESS=m
@ -9453,7 +9490,6 @@ CONFIG_NEED_SG_DMA_LENGTH=y
CONFIG_NEED_DMA_MAP_STATE=y
CONFIG_ARCH_DMA_ADDR_T_64BIT=y
CONFIG_HAVE_GENERIC_DMA_COHERENT=y
CONFIG_DMA_DIRECT_OPS=y
CONFIG_DMA_VIRT_OPS=y
CONFIG_SWIOTLB=y
CONFIG_SGL_ALLOC=y
@ -9477,10 +9513,10 @@ CONFIG_FONT_SUPPORT=y
CONFIG_FONT_8x8=y
CONFIG_FONT_8x16=y
CONFIG_SG_POOL=y
CONFIG_ARCH_HAS_SG_CHAIN=y
CONFIG_SBITMAP=y
CONFIG_PARMAN=m
# CONFIG_STRING_SELFTEST is not set
CONFIG_OBJAGG=m
#
# Kernel hacking
@ -9540,6 +9576,8 @@ CONFIG_MEMORY_NOTIFIER_ERROR_INJECT=m
# CONFIG_DEBUG_HIGHMEM is not set
CONFIG_HAVE_DEBUG_STACKOVERFLOW=y
# CONFIG_DEBUG_STACKOVERFLOW is not set
CONFIG_CC_HAS_KASAN_GENERIC=y
CONFIG_KASAN_STACK=1
CONFIG_CC_HAS_SANCOV_TRACE_PC=y
# CONFIG_DEBUG_SHIRQ is not set
@ -9649,6 +9687,7 @@ CONFIG_KPROBE_EVENTS=y
# CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
# CONFIG_UPROBE_EVENTS is not set
CONFIG_BPF_EVENTS=y
CONFIG_DYNAMIC_EVENTS=y
CONFIG_PROBE_EVENTS=y
CONFIG_DYNAMIC_FTRACE=y
CONFIG_DYNAMIC_FTRACE_WITH_REGS=y
@ -9701,6 +9740,7 @@ CONFIG_TEST_UDELAY=m
CONFIG_TEST_STATIC_KEYS=m
# CONFIG_TEST_KMOD is not set
# CONFIG_TEST_MEMCAT_P is not set
CONFIG_TEST_OBJAGG=m
CONFIG_MEMTEST=y
# CONFIG_BUG_ON_DATA_CORRUPTION is not set
# CONFIG_SAMPLES is not set

330
gnu/packages/aux-files/linux-libre/4.20-x86_64.conf → gnu/packages/aux-files/linux-libre/5.0-x86_64.conf
View File

@ -1,6 +1,6 @@
#
# Automatically generated file; DO NOT EDIT.
# Linux/x86 4.20.0-gnu Kernel Configuration
# Linux/x86 5.0.0-gnu Kernel Configuration
#
#
@ -9,6 +9,7 @@
CONFIG_CC_IS_GCC=y
CONFIG_GCC_VERSION=70400
CONFIG_CLANG_VERSION=0
CONFIG_CC_HAS_ASM_GOTO=y
CONFIG_IRQ_WORK=y
CONFIG_BUILDTIME_EXTABLE_SORT=y
CONFIG_THREAD_INFO_IN_TASK=y
@ -44,8 +45,6 @@ CONFIG_USELIB=y
CONFIG_AUDIT=y
CONFIG_HAVE_ARCH_AUDITSYSCALL=y
CONFIG_AUDITSYSCALL=y
CONFIG_AUDIT_WATCH=y
CONFIG_AUDIT_TREE=y
#
# IRQ subsystem
@ -283,7 +282,7 @@ CONFIG_X86_X2APIC=y
CONFIG_X86_MPPARSE=y
# CONFIG_GOLDFISH is not set
CONFIG_RETPOLINE=y
# CONFIG_INTEL_RDT is not set
# CONFIG_X86_CPU_RESCTRL is not set
CONFIG_X86_EXTENDED_PLATFORM=y
CONFIG_X86_NUMACHIP=y
# CONFIG_X86_VSMP is not set
@ -313,6 +312,7 @@ CONFIG_XEN_SAVE_RESTORE=y
# CONFIG_XEN_DEBUG_FS is not set
CONFIG_XEN_PVH=y
CONFIG_KVM_GUEST=y
CONFIG_PVH=y
CONFIG_KVM_DEBUG_FS=y
# CONFIG_PARAVIRT_TIME_ACCOUNTING is not set
CONFIG_PARAVIRT_CLOCK=y
@ -477,6 +477,7 @@ CONFIG_PM_TRACE=y
CONFIG_PM_TRACE_RTC=y
CONFIG_PM_CLK=y
CONFIG_WQ_POWER_EFFICIENT_DEFAULT=y
# CONFIG_ENERGY_MODEL is not set
CONFIG_ARCH_SUPPORTS_ACPI=y
CONFIG_ACPI=y
CONFIG_ACPI_LEGACY_TABLES_LOOKUP=y
@ -520,6 +521,7 @@ CONFIG_ACPI_HED=y
CONFIG_ACPI_BGRT=y
# CONFIG_ACPI_REDUCED_HARDWARE_ONLY is not set
CONFIG_ACPI_NFIT=m
# CONFIG_NFIT_SECURITY_DEBUG is not set
CONFIG_HAVE_ACPI_APEI=y
CONFIG_HAVE_ACPI_APEI_NMI=y
CONFIG_ACPI_APEI=y
@ -585,112 +587,14 @@ CONFIG_INTEL_IDLE=y
#
# Bus options (PCI etc.)
#
CONFIG_PCI=y
CONFIG_PCI_DIRECT=y
CONFIG_PCI_MMCONFIG=y
CONFIG_PCI_XEN=y
CONFIG_PCI_DOMAINS=y
CONFIG_MMCONF_FAM10H=y
# CONFIG_PCI_CNB20LE_QUIRK is not set
CONFIG_PCIEPORTBUS=y
CONFIG_HOTPLUG_PCI_PCIE=y
CONFIG_PCIEAER=y
# CONFIG_PCIEAER_INJECT is not set
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
CONFIG_PCIEASPM_DEBUG=y
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_REALLOC_ENABLE_AUTO=y
CONFIG_PCI_STUB=m
# CONFIG_PCI_PF_STUB is not set
CONFIG_XEN_PCIDEV_FRONTEND=m
CONFIG_PCI_ATS=y
CONFIG_PCI_LOCKLESS_CONFIG=y
CONFIG_PCI_IOV=y
CONFIG_PCI_PRI=y
CONFIG_PCI_PASID=y
# CONFIG_PCI_P2PDMA is not set
CONFIG_PCI_LABEL=y
CONFIG_PCI_HYPERV=m
CONFIG_HOTPLUG_PCI=y
CONFIG_HOTPLUG_PCI_ACPI=y
CONFIG_HOTPLUG_PCI_ACPI_IBM=m
CONFIG_HOTPLUG_PCI_CPCI=y
CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
CONFIG_HOTPLUG_PCI_SHPC=y
#
# PCI controller drivers
#
#
# Cadence PCIe controllers support
#
# CONFIG_VMD is not set
#
# DesignWare PCI Core Support
#
# CONFIG_PCIE_DW_PLAT_HOST is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
CONFIG_PCI_SW_SWITCHTEC=m
# CONFIG_ISA_BUS is not set
CONFIG_ISA_DMA_API=y
CONFIG_AMD_NB=y
CONFIG_PCCARD=m
CONFIG_PCMCIA=m
CONFIG_PCMCIA_LOAD_CIS=y
CONFIG_CARDBUS=y
#
# PC-card bridges
#
CONFIG_YENTA=m
CONFIG_YENTA_O2=y
CONFIG_YENTA_RICOH=y
CONFIG_YENTA_TI=y
CONFIG_YENTA_ENE_TUNE=y
CONFIG_YENTA_TOSHIBA=y
CONFIG_PD6729=m
CONFIG_I82092=m
CONFIG_PCCARD_NONSTATIC=y
CONFIG_RAPIDIO=y
CONFIG_RAPIDIO_TSI721=m
CONFIG_RAPIDIO_DISC_TIMEOUT=30
# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set
CONFIG_RAPIDIO_DMA_ENGINE=y
# CONFIG_RAPIDIO_DEBUG is not set
CONFIG_RAPIDIO_ENUM_BASIC=m
CONFIG_RAPIDIO_CHMAN=m
CONFIG_RAPIDIO_MPORT_CDEV=m
#
# RapidIO Switch drivers
#
CONFIG_RAPIDIO_TSI57X=m
CONFIG_RAPIDIO_CPS_XX=m
CONFIG_RAPIDIO_TSI568=m
CONFIG_RAPIDIO_CPS_GEN2=m
CONFIG_RAPIDIO_RXS_GEN3=m
# CONFIG_X86_SYSFB is not set
#
@ -833,6 +737,7 @@ CONFIG_HAVE_ARCH_WITHIN_STACK_FRAMES=y
CONFIG_HAVE_CONTEXT_TRACKING=y
CONFIG_HAVE_VIRT_CPU_ACCOUNTING_GEN=y
CONFIG_HAVE_IRQ_TIME_ACCOUNTING=y
CONFIG_HAVE_MOVE_PMD=y
CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE=y
CONFIG_HAVE_ARCH_TRANSPARENT_HUGEPAGE_PUD=y
CONFIG_HAVE_ARCH_HUGE_VMAP=y
@ -904,7 +809,6 @@ CONFIG_BLK_DEV_THROTTLING=y
CONFIG_BLK_CMDLINE_PARSER=y
CONFIG_BLK_WBT=y
# CONFIG_BLK_CGROUP_IOLATENCY is not set
# CONFIG_BLK_WBT_SQ is not set
CONFIG_BLK_WBT_MQ=y
CONFIG_BLK_DEBUG_FS=y
CONFIG_BLK_DEBUG_FS_ZONED=y
@ -943,14 +847,6 @@ CONFIG_BLK_PM=y
#
# IO Schedulers
#
CONFIG_IOSCHED_NOOP=y
CONFIG_IOSCHED_DEADLINE=y
CONFIG_IOSCHED_CFQ=y
CONFIG_CFQ_GROUP_IOSCHED=y
CONFIG_DEFAULT_DEADLINE=y
# CONFIG_DEFAULT_CFQ is not set
# CONFIG_DEFAULT_NOOP is not set
CONFIG_DEFAULT_IOSCHED="deadline"
CONFIG_MQ_IOSCHED_DEADLINE=m
CONFIG_MQ_IOSCHED_KYBER=m
CONFIG_IOSCHED_BFQ=m
@ -1058,6 +954,7 @@ CONFIG_NET=y
CONFIG_COMPAT_NETLINK_MESSAGES=y
CONFIG_NET_INGRESS=y
CONFIG_NET_EGRESS=y
CONFIG_SKB_EXTENSIONS=y
#
# Networking options
@ -1226,9 +1123,6 @@ CONFIG_NF_CT_NETLINK_HELPER=m
CONFIG_NETFILTER_NETLINK_GLUE_CT=y
CONFIG_NF_NAT=m
CONFIG_NF_NAT_NEEDED=y
CONFIG_NF_NAT_PROTO_DCCP=y
CONFIG_NF_NAT_PROTO_UDPLITE=y
CONFIG_NF_NAT_PROTO_SCTP=y
CONFIG_NF_NAT_AMANDA=m
CONFIG_NF_NAT_FTP=m
CONFIG_NF_NAT_IRC=m
@ -1434,7 +1328,6 @@ CONFIG_NF_REJECT_IPV4=m
CONFIG_NF_NAT_IPV4=m
CONFIG_NF_NAT_MASQUERADE_IPV4=y
CONFIG_NF_NAT_SNMP_BASIC=m
CONFIG_NF_NAT_PROTO_GRE=m
CONFIG_NF_NAT_PPTP=m
CONFIG_NF_NAT_H323=m
CONFIG_IP_NF_IPTABLES=m
@ -1577,6 +1470,7 @@ CONFIG_NET_DSA_TAG_DSA=y
CONFIG_NET_DSA_TAG_EDSA=y
CONFIG_NET_DSA_TAG_GSWIP=y
CONFIG_NET_DSA_TAG_KSZ=y
CONFIG_NET_DSA_TAG_KSZ9477=y
CONFIG_NET_DSA_TAG_LAN9303=y
CONFIG_NET_DSA_TAG_MTK=y
CONFIG_NET_DSA_TAG_TRAILER=y
@ -1997,6 +1891,108 @@ CONFIG_HAVE_EBPF_JIT=y
#
# Device Drivers
#
CONFIG_HAVE_EISA=y
# CONFIG_EISA is not set
CONFIG_HAVE_PCI=y
CONFIG_PCI=y
CONFIG_PCI_DOMAINS=y
CONFIG_PCIEPORTBUS=y
CONFIG_HOTPLUG_PCI_PCIE=y
CONFIG_PCIEAER=y
# CONFIG_PCIEAER_INJECT is not set
# CONFIG_PCIE_ECRC is not set
CONFIG_PCIEASPM=y
CONFIG_PCIEASPM_DEBUG=y
CONFIG_PCIEASPM_DEFAULT=y
# CONFIG_PCIEASPM_POWERSAVE is not set
# CONFIG_PCIEASPM_POWER_SUPERSAVE is not set
# CONFIG_PCIEASPM_PERFORMANCE is not set
CONFIG_PCIE_PME=y
CONFIG_PCIE_DPC=y
CONFIG_PCIE_PTM=y
CONFIG_PCI_MSI=y
CONFIG_PCI_MSI_IRQ_DOMAIN=y
CONFIG_PCI_QUIRKS=y
# CONFIG_PCI_DEBUG is not set
CONFIG_PCI_REALLOC_ENABLE_AUTO=y
CONFIG_PCI_STUB=m
# CONFIG_PCI_PF_STUB is not set
CONFIG_XEN_PCIDEV_FRONTEND=m
CONFIG_PCI_ATS=y
CONFIG_PCI_LOCKLESS_CONFIG=y
CONFIG_PCI_IOV=y
CONFIG_PCI_PRI=y
CONFIG_PCI_PASID=y
# CONFIG_PCI_P2PDMA is not set
CONFIG_PCI_LABEL=y
CONFIG_PCI_HYPERV=m
CONFIG_HOTPLUG_PCI=y
CONFIG_HOTPLUG_PCI_ACPI=y
CONFIG_HOTPLUG_PCI_ACPI_IBM=m
CONFIG_HOTPLUG_PCI_CPCI=y
CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
CONFIG_HOTPLUG_PCI_SHPC=y
#
# PCI controller drivers
#
#
# Cadence PCIe controllers support
#
# CONFIG_VMD is not set
#
# DesignWare PCI Core Support
#
# CONFIG_PCIE_DW_PLAT_HOST is not set
# CONFIG_PCI_MESON is not set
#
# PCI Endpoint
#
# CONFIG_PCI_ENDPOINT is not set
#
# PCI switch controller drivers
#
CONFIG_PCI_SW_SWITCHTEC=m
CONFIG_PCCARD=m
CONFIG_PCMCIA=m
CONFIG_PCMCIA_LOAD_CIS=y
CONFIG_CARDBUS=y
#
# PC-card bridges
#
CONFIG_YENTA=m
CONFIG_YENTA_O2=y
CONFIG_YENTA_RICOH=y
CONFIG_YENTA_TI=y
CONFIG_YENTA_ENE_TUNE=y
CONFIG_YENTA_TOSHIBA=y
CONFIG_PD6729=m
CONFIG_I82092=m
CONFIG_PCCARD_NONSTATIC=y
CONFIG_RAPIDIO=y
CONFIG_RAPIDIO_TSI721=m
CONFIG_RAPIDIO_DISC_TIMEOUT=30
# CONFIG_RAPIDIO_ENABLE_RX_TX_PORTS is not set
CONFIG_RAPIDIO_DMA_ENGINE=y
# CONFIG_RAPIDIO_DEBUG is not set
CONFIG_RAPIDIO_ENUM_BASIC=m
CONFIG_RAPIDIO_CHMAN=m
CONFIG_RAPIDIO_MPORT_CDEV=m
#
# RapidIO Switch drivers
#
CONFIG_RAPIDIO_TSI57X=m
CONFIG_RAPIDIO_CPS_XX=m
CONFIG_RAPIDIO_TSI568=m
CONFIG_RAPIDIO_CPS_GEN2=m
CONFIG_RAPIDIO_RXS_GEN3=m
#
# Generic Driver Options
@ -2047,16 +2043,16 @@ CONFIG_GNSS_SIRF_SERIAL=m
CONFIG_GNSS_UBX_SERIAL=m
CONFIG_MTD=m
# CONFIG_MTD_TESTS is not set
CONFIG_MTD_REDBOOT_PARTS=m
CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1
# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set
# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set
CONFIG_MTD_CMDLINE_PARTS=m
CONFIG_MTD_AR7_PARTS=m
#
# Partition parsers
#
CONFIG_MTD_REDBOOT_PARTS=m
CONFIG_MTD_REDBOOT_DIRECTORY_BLOCK=-1
# CONFIG_MTD_REDBOOT_PARTS_UNALLOCATED is not set
# CONFIG_MTD_REDBOOT_PARTS_READONLY is not set
#
# User Modules And Translation Layers
@ -2101,6 +2097,7 @@ CONFIG_MTD_ABSENT=m
CONFIG_MTD_COMPLEX_MAPPINGS=y
CONFIG_MTD_PHYSMAP=m
# CONFIG_MTD_PHYSMAP_COMPAT is not set
# CONFIG_MTD_PHYSMAP_GPIO_ADDR is not set
CONFIG_MTD_SBC_GXX=m
CONFIG_MTD_AMD76XROM=m
CONFIG_MTD_ICHXROM=m
@ -2112,10 +2109,8 @@ CONFIG_MTD_L440GX=m
CONFIG_MTD_PCI=m
CONFIG_MTD_PCMCIA=m
# CONFIG_MTD_PCMCIA_ANONYMOUS is not set
CONFIG_MTD_GPIO_ADDR=m
CONFIG_MTD_INTEL_VR_NOR=m
CONFIG_MTD_PLATRAM=m
CONFIG_MTD_LATCH_ADDR=m
#
# Self-contained MTD device drivers
@ -2271,11 +2266,13 @@ CONFIG_BLK_DEV_NVME=y
CONFIG_NVME_FABRICS=m
CONFIG_NVME_RDMA=m
CONFIG_NVME_FC=m
CONFIG_NVME_TCP=m
CONFIG_NVME_TARGET=m
CONFIG_NVME_TARGET_LOOP=m
CONFIG_NVME_TARGET_RDMA=m
CONFIG_NVME_TARGET_FC=m
CONFIG_NVME_TARGET_FCLOOP=m
CONFIG_NVME_TARGET_TCP=m
#
# Misc devices
@ -2307,6 +2304,7 @@ CONFIG_LATTICE_ECP3_CONFIG=m
CONFIG_SRAM=y
# CONFIG_PCI_ENDPOINT_TEST is not set
CONFIG_MISC_RTSX=m
CONFIG_PVPANIC=m
CONFIG_C2PORT=m
CONFIG_C2PORT_DURAMAR_2150=m
@ -2383,6 +2381,7 @@ CONFIG_VHOST_RING=m
CONFIG_GENWQE=m
CONFIG_GENWQE_PLATFORM_ERROR_RECOVERY=0
CONFIG_ECHO=m
CONFIG_MISC_ALCOR_PCI=m
CONFIG_MISC_RTSX_PCI=m
CONFIG_MISC_RTSX_USB=m
CONFIG_HAVE_IDE=y
@ -2396,7 +2395,6 @@ CONFIG_RAID_ATTRS=m
CONFIG_SCSI=y
CONFIG_SCSI_DMA=y
CONFIG_SCSI_NETLINK=y
# CONFIG_SCSI_MQ_DEFAULT is not set
CONFIG_SCSI_PROC_FS=y
#
@ -2475,6 +2473,7 @@ CONFIG_SCSI_UFSHCD=m
CONFIG_SCSI_UFSHCD_PCI=m
# CONFIG_SCSI_UFS_DWC_TC_PCI is not set
CONFIG_SCSI_UFSHCD_PLATFORM=m
CONFIG_SCSI_UFS_CDNS_PLATFORM=m
# CONFIG_SCSI_UFS_DWC_TC_PLATFORM is not set
# CONFIG_SCSI_UFS_BSG is not set
CONFIG_SCSI_HPTIOP=m
@ -2816,8 +2815,9 @@ CONFIG_NET_DSA_BCM_SF2=m
CONFIG_NET_DSA_LANTIQ_GSWIP=m
CONFIG_NET_DSA_MT7530=m
CONFIG_NET_DSA_MV88E6060=m
CONFIG_MICROCHIP_KSZ=m
CONFIG_MICROCHIP_KSZ_SPI_DRIVER=m
CONFIG_NET_DSA_MICROCHIP_KSZ_COMMON=m
CONFIG_NET_DSA_MICROCHIP_KSZ9477=m
CONFIG_NET_DSA_MICROCHIP_KSZ9477_SPI=m
CONFIG_NET_DSA_MV88E6XXX=m
CONFIG_NET_DSA_MV88E6XXX_GLOBAL2=y
# CONFIG_NET_DSA_MV88E6XXX_PTP is not set
@ -3249,6 +3249,7 @@ CONFIG_USB_IPHETH=m
CONFIG_USB_SIERRA_NET=m
CONFIG_USB_VL600=m
CONFIG_USB_NET_CH9200=m
CONFIG_USB_NET_AQC111=m
CONFIG_WLAN=y
# CONFIG_WIRELESS_WDS is not set
CONFIG_WLAN_VENDOR_ADMTEK=y
@ -3510,11 +3511,12 @@ CONFIG_ZD1211RW=m
# CONFIG_ZD1211RW_DEBUG is not set
CONFIG_WLAN_VENDOR_QUANTENNA=y
CONFIG_QTNFMAC=m
CONFIG_QTNFMAC_PEARL_PCIE=m
CONFIG_QTNFMAC_PCIE=m
CONFIG_PCMCIA_RAYCS=m
CONFIG_PCMCIA_WL3501=m
CONFIG_MAC80211_HWSIM=m
CONFIG_USB_NET_RNDIS_WLAN=m
CONFIG_VIRT_WIFI=m
#
# WiMAX Wireless Broadband devices
@ -3656,13 +3658,6 @@ CONFIG_ISDN_DRV_AVMB1_B1PCMCIA=m
CONFIG_ISDN_DRV_AVMB1_AVM_CS=m
CONFIG_ISDN_DRV_AVMB1_T1PCI=m
CONFIG_ISDN_DRV_AVMB1_C4=m
CONFIG_CAPI_EICON=y
CONFIG_ISDN_DIVAS=m
CONFIG_ISDN_DIVAS_BRIPCI=y
CONFIG_ISDN_DIVAS_PRIPCI=y
CONFIG_ISDN_DIVAS_DIVACAPI=m
CONFIG_ISDN_DIVAS_USERIDI=m
CONFIG_ISDN_DIVAS_MAINT=m
CONFIG_ISDN_DRV_GIGASET=m
# CONFIG_GIGASET_CAPI is not set
CONFIG_GIGASET_I4L=y
@ -4005,6 +4000,7 @@ CONFIG_SERIO_RAW=m
CONFIG_SERIO_ALTERA_PS2=m
CONFIG_SERIO_PS2MULT=m
CONFIG_SERIO_ARC_PS2=m
# CONFIG_SERIO_OLPC_APSP is not set
CONFIG_HYPERV_KEYBOARD=m
CONFIG_SERIO_GPIO_PS2=m
CONFIG_USERIO=m
@ -4104,6 +4100,7 @@ CONFIG_SERIAL_MEN_Z135=m
CONFIG_SERIAL_DEV_BUS=y
CONFIG_SERIAL_DEV_CTRL_TTYPORT=y
CONFIG_TTY_PRINTK=y
CONFIG_TTY_PRINTK_LEVEL=6
CONFIG_PRINTER=m
# CONFIG_LP_CONSOLE is not set
CONFIG_PPDEV=m
@ -4265,6 +4262,9 @@ CONFIG_I2C_SLAVE_EEPROM=m
# CONFIG_I2C_DEBUG_CORE is not set
# CONFIG_I2C_DEBUG_ALGO is not set
# CONFIG_I2C_DEBUG_BUS is not set
CONFIG_I3C=m
CONFIG_CDNS_I3C_MASTER=m
CONFIG_DW_I3C_MASTER=m
CONFIG_SPI=y
# CONFIG_SPI_DEBUG is not set
CONFIG_SPI_MASTER=y
@ -4290,6 +4290,7 @@ CONFIG_SPI_PXA2XX=m
CONFIG_SPI_PXA2XX_PCI=m
CONFIG_SPI_ROCKCHIP=m
CONFIG_SPI_SC18IS602=m
CONFIG_SPI_MXIC=m
CONFIG_SPI_XCOMM=m
# CONFIG_SPI_XILINX is not set
CONFIG_SPI_ZYNQMP_GQSPI=m
@ -4654,6 +4655,7 @@ CONFIG_SENSORS_NCT6775=m
CONFIG_SENSORS_NCT7802=m
CONFIG_SENSORS_NCT7904=m
CONFIG_SENSORS_NPCM7XX=m
# CONFIG_SENSORS_OCC_P8_I2C is not set
CONFIG_SENSORS_PCF8591=m
CONFIG_PMBUS=m
CONFIG_SENSORS_PMBUS=m
@ -4747,6 +4749,10 @@ CONFIG_THERMAL_GOV_POWER_ALLOCATOR=y
CONFIG_CLOCK_THERMAL=y
CONFIG_DEVFREQ_THERMAL=y
CONFIG_THERMAL_EMULATION=y
#
# Intel thermal drivers
#
CONFIG_INTEL_POWERCLAMP=m
CONFIG_X86_PKG_TEMP_THERMAL=m
CONFIG_INTEL_SOC_DTS_IOSF_CORE=m
@ -4816,6 +4822,7 @@ CONFIG_60XX_WDT=m
CONFIG_CPU5_WDT=m
CONFIG_SMSC_SCH311X_WDT=m
CONFIG_SMSC37B787_WDT=m
CONFIG_TQMX86_WDT=m
CONFIG_VIA_WDT=m
CONFIG_W83627HF_WDT=m
CONFIG_W83877F_WDT=m
@ -4876,7 +4883,6 @@ CONFIG_MFD_CORE=y
CONFIG_MFD_AS3711=y
CONFIG_PMIC_ADP5520=y
CONFIG_MFD_AAT2870_CORE=y
CONFIG_MFD_AT91_USART=m
CONFIG_MFD_BCM590XX=m
CONFIG_MFD_BD9571MWV=m
CONFIG_MFD_AXP20X=m
@ -5109,6 +5115,7 @@ CONFIG_RC_LOOPBACK=m
CONFIG_IR_SERIAL=m
CONFIG_IR_SERIAL_TRANSMITTER=y
CONFIG_IR_SIR=m
CONFIG_RC_XBOX_DVD=m
CONFIG_MEDIA_SUPPORT=m
#
@ -5129,7 +5136,6 @@ CONFIG_VIDEO_V4L2_SUBDEV_API=y
CONFIG_VIDEO_V4L2=m
# CONFIG_VIDEO_ADV_DEBUG is not set
# CONFIG_VIDEO_FIXED_MINOR_RANGES is not set
# CONFIG_VIDEO_PCI_SKELETON is not set
CONFIG_VIDEO_TUNER=m
CONFIG_V4L2_MEM2MEM_DEV=m
CONFIG_V4L2_FLASH_LED_CLASS=m
@ -5398,6 +5404,7 @@ CONFIG_VIDEO_VIA_CAMERA=m
CONFIG_VIDEO_CADENCE=y
CONFIG_VIDEO_CADENCE_CSI2RX=m
CONFIG_VIDEO_CADENCE_CSI2TX=m
CONFIG_VIDEO_ASPEED=m
CONFIG_SOC_CAMERA=m
CONFIG_SOC_CAMERA_PLATFORM=m
CONFIG_V4L_MEM2MEM_DRIVERS=y
@ -5413,6 +5420,8 @@ CONFIG_VIDEO_VICODEC=m
CONFIG_DVB_PLATFORM_DRIVERS=y
CONFIG_CEC_PLATFORM_DRIVERS=y
CONFIG_VIDEO_CROS_EC_CEC=m
CONFIG_VIDEO_SECO_CEC=m
# CONFIG_VIDEO_SECO_RC is not set
CONFIG_SDR_PLATFORM_DRIVERS=y
#
@ -5930,7 +5939,7 @@ CONFIG_FB_SYS_FOPS=m
CONFIG_FB_DEFERRED_IO=y
CONFIG_FB_HECUBA=m
CONFIG_FB_SVGALIB=m
CONFIG_FB_BACKLIGHT=y
CONFIG_FB_BACKLIGHT=m
CONFIG_FB_MODE_HELPERS=y
CONFIG_FB_TILEBLITTING=y
@ -6266,6 +6275,7 @@ CONFIG_SND_SOC_ACPI=m
CONFIG_SND_SOC_AMD_ACP=m
CONFIG_SND_SOC_AMD_CZ_DA7219MX98357_MACH=m
CONFIG_SND_SOC_AMD_CZ_RT5645_MACH=m
CONFIG_SND_SOC_AMD_ACP3x=m
CONFIG_SND_ATMEL_SOC=m
CONFIG_SND_DESIGNWARE_I2S=m
# CONFIG_SND_DESIGNWARE_PCM is not set
@ -6297,6 +6307,13 @@ CONFIG_SND_SST_ATOM_HIFI2_PLATFORM=m
CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_PCI=m
CONFIG_SND_SST_ATOM_HIFI2_PLATFORM_ACPI=m
CONFIG_SND_SOC_INTEL_SKYLAKE=m
CONFIG_SND_SOC_INTEL_SKL=m
CONFIG_SND_SOC_INTEL_APL=m
CONFIG_SND_SOC_INTEL_KBL=m
CONFIG_SND_SOC_INTEL_GLK=m
CONFIG_SND_SOC_INTEL_CNL=m
CONFIG_SND_SOC_INTEL_CFL=m
CONFIG_SND_SOC_INTEL_SKYLAKE_FAMILY=m
CONFIG_SND_SOC_INTEL_SKYLAKE_SSP_CLK=m
CONFIG_SND_SOC_INTEL_SKYLAKE_HDAUDIO_CODEC=y
CONFIG_SND_SOC_INTEL_SKYLAKE_COMMON=m
@ -6323,12 +6340,14 @@ CONFIG_SND_SOC_INTEL_KBL_RT5663_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_RT5663_RT5514_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98357A_MACH=m
CONFIG_SND_SOC_INTEL_KBL_DA7219_MAX98927_MACH=m
CONFIG_SND_SOC_INTEL_KBL_RT5660_MACH=m
CONFIG_SND_SOC_INTEL_GLK_RT5682_MAX98357A_MACH=m
CONFIG_SND_SOC_INTEL_SKL_HDA_DSP_GENERIC_MACH=m
#
# STMicroelectronics STM32 SOC audio support
#
CONFIG_SND_SOC_XILINX_I2S=m
CONFIG_SND_SOC_XTFPGA_I2S=m
CONFIG_ZX_TDM=m
CONFIG_SND_SOC_I2C_AND_SPI=m
@ -6345,6 +6364,7 @@ CONFIG_SND_SOC_ADAU1761_I2C=m
CONFIG_SND_SOC_ADAU1761_SPI=m
CONFIG_SND_SOC_ADAU7002=m
CONFIG_SND_SOC_AK4104=m
CONFIG_SND_SOC_AK4118=m
CONFIG_SND_SOC_AK4458=m
CONFIG_SND_SOC_AK4554=m
CONFIG_SND_SOC_AK4613=m
@ -6427,6 +6447,7 @@ CONFIG_SND_SOC_RT5631=m
CONFIG_SND_SOC_RT5640=m
CONFIG_SND_SOC_RT5645=m
CONFIG_SND_SOC_RT5651=m
CONFIG_SND_SOC_RT5660=m
CONFIG_SND_SOC_RT5663=m
CONFIG_SND_SOC_RT5670=m
CONFIG_SND_SOC_RT5677=m
@ -7015,10 +7036,10 @@ CONFIG_TYPEC_MUX_PI3USB30532=m
# USB Type-C Alternate Mode drivers
#
CONFIG_TYPEC_DP_ALTMODE=m
CONFIG_USB_ROLE_SWITCH=m
CONFIG_USB_ROLES_INTEL_XHCI=m
CONFIG_USB_LED_TRIG=y
CONFIG_USB_ULPI_BUS=m
CONFIG_USB_ROLE_SWITCH=m
CONFIG_UWB=m
CONFIG_UWB_HWA=m
CONFIG_UWB_WHCI=m
@ -7040,6 +7061,7 @@ CONFIG_MMC_SDHCI_ACPI=m
CONFIG_MMC_SDHCI_PLTFM=m
CONFIG_MMC_SDHCI_F_SDH30=m
CONFIG_MMC_WBSD=m
CONFIG_MMC_ALCOR=m
CONFIG_MMC_TIFM_SD=m
CONFIG_MMC_SPI=m
CONFIG_MMC_SDRICOH_CS=m
@ -7153,6 +7175,7 @@ CONFIG_LEDS_TRIGGER_CAMERA=m
CONFIG_LEDS_TRIGGER_PANIC=y
CONFIG_LEDS_TRIGGER_NETDEV=m
CONFIG_LEDS_TRIGGER_PATTERN=m
CONFIG_LEDS_TRIGGER_AUDIO=m
# CONFIG_ACCESSIBILITY is not set
CONFIG_INFINIBAND=m
CONFIG_INFINIBAND_USER_MAD=m
@ -7471,6 +7494,7 @@ CONFIG_XEN_AUTO_XLATE=y
CONFIG_XEN_ACPI=y
CONFIG_XEN_SYMS=y
CONFIG_XEN_HAVE_VPMU=y
CONFIG_XEN_FRONT_PGDIR_SHBUF=m
CONFIG_STAGING=y
CONFIG_PRISM2_USB=m
CONFIG_COMEDI=m
@ -7683,7 +7707,6 @@ CONFIG_ADE7854_SPI=m
#
# Resolver to digital converters
#
CONFIG_AD2S90=m
CONFIG_AD2S1210=m
CONFIG_FB_SM750=m
CONFIG_FB_XGI=m
@ -7715,6 +7738,7 @@ CONFIG_VIDEO_ZORAN_DC10=m
CONFIG_VIDEO_ZORAN_LML33=m
CONFIG_VIDEO_ZORAN_LML33R10=m
CONFIG_VIDEO_ZORAN_AVS6EYES=m
CONFIG_VIDEO_IPU3_IMGU=m
#
# Android
@ -7723,8 +7747,6 @@ CONFIG_LTE_GDM724X=m
CONFIG_FIREWIRE_SERIAL=m
CONFIG_FWTTY_MAX_TOTAL_PORTS=64
CONFIG_FWTTY_MAX_CARD_PORTS=32
CONFIG_MTD_SPINAND_MT29F=m
CONFIG_MTD_SPINAND_ONDIEECC=y
CONFIG_GS_FPGABOOT=m
CONFIG_UNISYSSPAR=y
CONFIG_UNISYS_VISORNIC=m
@ -7870,7 +7892,6 @@ CONFIG_SAMSUNG_Q10=m
CONFIG_APPLE_GMUX=m
CONFIG_INTEL_RST=m
CONFIG_INTEL_SMARTCONNECT=m
CONFIG_PVPANIC=m
CONFIG_INTEL_PMC_IPC=m
CONFIG_INTEL_BXTWC_PMIC_TMU=m
CONFIG_SURFACE_PRO3_BUTTON=m
@ -7883,6 +7904,7 @@ CONFIG_INTEL_TELEMETRY=m
CONFIG_INTEL_CHTDC_TI_PWRBTN=m
CONFIG_I2C_MULTI_INSTANTIATE=m
CONFIG_INTEL_ATOMISP2_PM=m
CONFIG_HUAWEI_WMI=m
CONFIG_PMC_ATOM=y
CONFIG_CHROME_PLATFORMS=y
CONFIG_CHROMEOS_LAPTOP=m
@ -8081,6 +8103,7 @@ CONFIG_STK8BA50=m
# Analog to digital converters
#
CONFIG_AD_SIGMA_DELTA=m
CONFIG_AD7124=m
CONFIG_AD7266=m
CONFIG_AD7291=m
CONFIG_AD7298=m
@ -8090,6 +8113,7 @@ CONFIG_AD7791=m
CONFIG_AD7793=m
CONFIG_AD7887=m
CONFIG_AD7923=m
CONFIG_AD7949=m
CONFIG_AD799X=m
CONFIG_AXP20X_ADC=m
CONFIG_AXP288_ADC=m
@ -8208,6 +8232,7 @@ CONFIG_MCP4725=m
CONFIG_MCP4922=m
CONFIG_TI_DAC082S085=m
CONFIG_TI_DAC5571=m
CONFIG_TI_DAC7311=m
#
# IIO dummy driver
@ -8336,6 +8361,7 @@ CONFIG_TSL2772=m
CONFIG_TSL4531=m
CONFIG_US5182D=m
CONFIG_VCNL4000=m
CONFIG_VCNL4035=m
CONFIG_VEML6070=m
CONFIG_VL6180=m
CONFIG_ZOPT2201=m
@ -8357,6 +8383,9 @@ CONFIG_IIO_ST_MAGN_SPI_3AXIS=m
CONFIG_SENSORS_HMC5843=m
CONFIG_SENSORS_HMC5843_I2C=m
CONFIG_SENSORS_HMC5843_SPI=m
CONFIG_SENSORS_RM3100=m
CONFIG_SENSORS_RM3100_I2C=m
CONFIG_SENSORS_RM3100_SPI=m
#
# Multiplexers
@ -8386,6 +8415,7 @@ CONFIG_MAX5487=m
CONFIG_MCP4018=m
CONFIG_MCP4131=m
CONFIG_MCP4531=m
CONFIG_MCP41010=m
CONFIG_TPL0102=m
#
@ -8439,6 +8469,7 @@ CONFIG_VL53L0X_I2C=m
#
# Resolver to digital converters
#
CONFIG_AD2S90=m
CONFIG_AD2S1200=m
#
@ -8495,6 +8526,7 @@ CONFIG_PWM_TWL_LED=m
# IRQ chip support
#
CONFIG_ARM_GIC_MAX_NR=1
CONFIG_MADERA_IRQ=m
CONFIG_IPACK_BUS=m
CONFIG_BOARD_TPCI200=m
CONFIG_SERIAL_IPOCTAL=m
@ -8545,6 +8577,7 @@ CONFIG_BTT=y
CONFIG_ND_PFN=m
CONFIG_NVDIMM_PFN=y
CONFIG_NVDIMM_DAX=y
CONFIG_NVDIMM_KEYS=y
CONFIG_DAX_DRIVER=y
CONFIG_DAX=y
CONFIG_DEV_DAX=m
@ -9018,6 +9051,7 @@ CONFIG_IMA_DEFAULT_HASH="sha1"
# CONFIG_IMA_WRITE_POLICY is not set
# CONFIG_IMA_READ_POLICY is not set
CONFIG_IMA_APPRAISE=y
# CONFIG_IMA_ARCH_POLICY is not set
# CONFIG_IMA_APPRAISE_BUILD_POLICY is not set
CONFIG_IMA_APPRAISE_BOOTPARAM=y
CONFIG_IMA_TRUSTED_KEYRING=y
@ -9115,6 +9149,10 @@ CONFIG_CRYPTO_OFB=m
CONFIG_CRYPTO_PCBC=m
CONFIG_CRYPTO_XTS=m
CONFIG_CRYPTO_KEYWRAP=m
CONFIG_CRYPTO_NHPOLY1305=m
CONFIG_CRYPTO_NHPOLY1305_SSE2=m
CONFIG_CRYPTO_NHPOLY1305_AVX2=m
CONFIG_CRYPTO_ADIANTUM=m
#
# Hash modes
@ -9151,6 +9189,7 @@ CONFIG_CRYPTO_SHA256=y
CONFIG_CRYPTO_SHA512=y
CONFIG_CRYPTO_SHA3=m
CONFIG_CRYPTO_SM3=m
CONFIG_CRYPTO_STREEBOG=m
CONFIG_CRYPTO_TGR192=m
CONFIG_CRYPTO_WP512=m
CONFIG_CRYPTO_GHASH_CLMUL_NI_INTEL=m
@ -9221,6 +9260,7 @@ CONFIG_CRYPTO_USER_API_HASH=m
CONFIG_CRYPTO_USER_API_SKCIPHER=m
CONFIG_CRYPTO_USER_API_RNG=m
CONFIG_CRYPTO_USER_API_AEAD=m
# CONFIG_CRYPTO_STATS is not set
CONFIG_CRYPTO_HASH_INFO=y
CONFIG_CRYPTO_HW=y
CONFIG_CRYPTO_DEV_PADLOCK=y
@ -9268,6 +9308,7 @@ CONFIG_BINARY_PRINTF=y
# Library routines
#
CONFIG_RAID6_PQ=m
CONFIG_RAID6_PQ_BENCHMARK=y
CONFIG_BITREVERSE=y
CONFIG_RATIONAL=y
CONFIG_GENERIC_STRNCPY_FROM_USER=y
@ -9293,7 +9334,7 @@ CONFIG_CRC64=m
CONFIG_CRC7=m
CONFIG_LIBCRC32C=m
CONFIG_CRC8=m
CONFIG_XXHASH=m
CONFIG_XXHASH=y
# CONFIG_RANDOM32_SELFTEST is not set
CONFIG_842_COMPRESS=m
CONFIG_842_DECOMPRESS=m
@ -9342,7 +9383,6 @@ CONFIG_HAS_DMA=y
CONFIG_NEED_SG_DMA_LENGTH=y
CONFIG_NEED_DMA_MAP_STATE=y
CONFIG_ARCH_DMA_ADDR_T_64BIT=y
CONFIG_DMA_DIRECT_OPS=y
CONFIG_DMA_VIRT_OPS=y
CONFIG_SWIOTLB=y
CONFIG_SGL_ALLOC=y
@ -9367,13 +9407,13 @@ CONFIG_FONT_SUPPORT=y
CONFIG_FONT_8x8=y
CONFIG_FONT_8x16=y
CONFIG_SG_POOL=y
CONFIG_ARCH_HAS_SG_CHAIN=y
CONFIG_ARCH_HAS_PMEM_API=y
CONFIG_ARCH_HAS_UACCESS_FLUSHCACHE=y
CONFIG_ARCH_HAS_UACCESS_MCSAFE=y
CONFIG_SBITMAP=y
CONFIG_PARMAN=m
# CONFIG_STRING_SELFTEST is not set
CONFIG_OBJAGG=m
#
# Kernel hacking
@ -9434,7 +9474,9 @@ CONFIG_MEMORY_NOTIFIER_ERROR_INJECT=m
CONFIG_HAVE_DEBUG_STACKOVERFLOW=y
# CONFIG_DEBUG_STACKOVERFLOW is not set
CONFIG_HAVE_ARCH_KASAN=y
CONFIG_CC_HAS_KASAN_GENERIC=y
# CONFIG_KASAN is not set
CONFIG_KASAN_STACK=1
CONFIG_ARCH_HAS_KCOV=y
CONFIG_CC_HAS_SANCOV_TRACE_PC=y
# CONFIG_KCOV is not set
@ -9547,6 +9589,7 @@ CONFIG_KPROBE_EVENTS=y
# CONFIG_KPROBE_EVENTS_ON_NOTRACE is not set
# CONFIG_UPROBE_EVENTS is not set
CONFIG_BPF_EVENTS=y
CONFIG_DYNAMIC_EVENTS=y
CONFIG_PROBE_EVENTS=y
CONFIG_DYNAMIC_FTRACE=y
CONFIG_DYNAMIC_FTRACE_WITH_REGS=y
@ -9599,6 +9642,7 @@ CONFIG_TEST_UDELAY=m
CONFIG_TEST_STATIC_KEYS=m
# CONFIG_TEST_KMOD is not set
# CONFIG_TEST_MEMCAT_P is not set
CONFIG_TEST_OBJAGG=m
CONFIG_MEMTEST=y
# CONFIG_BUG_ON_DATA_CORRUPTION is not set
# CONFIG_SAMPLES is not set

27
gnu/packages/benchmark.scm
View File

@ -2,7 +2,7 @@
;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Dave Love <fx@gnu.org>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2019 Eric Bavier <bavier@member.fsf.org>
;;;
;;; This file is part of GNU Guix.
@ -168,3 +168,28 @@ Efficiency of the MPI implementation.
(license license:cpl1.0)))
(define-public imb-openmpi (imb openmpi))
(define-public multitime
(package
(name "multitime")
(version "1.4")
(source (origin
(method url-fetch)
(uri (string-append "https://tratt.net/laurie/src/"
"multitime/releases/"
"multitime-" version ".tar.gz"))
(sha256
(base32
"0iyfsdrbyqa7a4ifrh19l9a48hgv7ld6m0d8yf9bkl12q0qw91fx"))))
(build-system gnu-build-system)
(arguments '(#:tests? #f)) ; there are no tests
(home-page "https://tratt.net/laurie/src/multitime/")
(synopsis "Time command execution over multiple executions")
(description
"The @code{time} utility is a simple and often effective way of measuring
how long a command takes to run (wall time). Unfortunately, running a command
once can give misleading timings. @code{multitime} is, in essence, a simple
extension to @code{time} which runs a command multiple times and prints the
timing means, standard deviations, mins, medians, and maxes having done so.
This can give a much better understanding of the command's performance.")
(license license:expat)))

450
gnu/packages/bioconductor.scm
View File

@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@ -33,6 +33,70 @@
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce6_"
version ".tar.gz"))
(sha256
(base32
"0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce10_"
version ".tar.gz"))
(sha256
(base32
"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm6")
@ -65,6 +129,38 @@ melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Dmelanogaster.UCSC.dm3_"
version ".tar.gz"))
(sha256
(base32
"19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
(properties
`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
(synopsis "Full genome sequences for Fly")
(description
"This package provides full genome sequences for Drosophila
melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3-masked")
@ -100,6 +196,37 @@ RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats
Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
(package
(name "r-bsgenome-hsapiens-1000genomes-hs37d5")
(version "0.99.1")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Hsapiens.1000genomes.hs37d5_"
version ".tar.gz"))
(sha256
(base32
"1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/")
(synopsis "Full genome sequences for Homo sapiens")
(description
"This package provides full genome sequences for Homo sapiens from
1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-ucsc-hg19-masked
(package
(name "r-bsgenome-hsapiens-ucsc-hg19-masked")
@ -135,6 +262,37 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by
default.")
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm9
(package
(name "r-bsgenome-mmusculus-ucsc-mm9")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm9_"
version ".tar.gz"))
(sha256
(base32
"1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm9")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus musculus (Mouse) as
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm9-masked
(package
(name "r-bsgenome-mmusculus-ucsc-mm9-masked")
@ -170,6 +328,90 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by
default." )
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm10
(package
(name "r-bsgenome-mmusculus-ucsc-mm10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm10_"
version ".tar.gz"))
(sha256
(base32
"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus
musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-org-ce-eg-db
(package
(name "r-org-ce-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Ce.eg.db_" version ".tar.gz"))
(sha256
(base32
"1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
(properties
`((upstream-name . "org.Ce.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
(synopsis "Genome wide annotation for Worm")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model worm Caenorhabditis elegans.")
(license license:artistic2.0)))
(define-public r-org-dm-eg-db
(package
(name "r-org-dm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Dm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"))))
(properties
`((upstream-name . "org.Dm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Dm.eg.db/")
(synopsis "Genome wide annotation for Fly")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model fruit fly Drosophila melanogaster.")
(license license:artistic2.0)))
(define-public r-org-dr-eg-db
(package
(name "r-org-dr-eg-db")
@ -196,10 +438,93 @@ default." )
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Hs.eg.db_" version ".tar.gz"))
(sha256
(base32
"1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
(properties
`((upstream-name . "org.Hs.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
(synopsis "Genome wide annotation for Human")
(description
"This package contains genome-wide annotations for Human, primarily based
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Mm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"))))
(properties
`((upstream-name . "org.Mm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/")
(synopsis "Genome wide annotation for Mouse")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model mouse Mus musculus.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Hsapiens.UCSC.hg19_"
version ".tar.gz"))
(sha256
(base32
"1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
(synopsis "Full genome sequences for Homo sapiens")
(description
"This package provides full genome sequences for Homo sapiens as provided
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
(version "1.16.0")
(version "1.18.0")
(source
(origin
(method url-fetch)
@ -210,7 +535,7 @@ based on mapping using Entrez Gene identifiers.")
"/geneLenDataBase_" version ".tar.gz"))
(sha256
(base32
"07mmmn53kb7v14msc13dsbm8ghssbvwcrhifrk15hn37bw2p4ja5"))))
"03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a"))))
(properties
`((upstream-name . "geneLenDataBase")))
(build-system r-build-system)
@ -224,6 +549,38 @@ based on mapping using Entrez Gene identifiers.")
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
(version "3.2.2")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/annotation/src/contrib"
"/TxDb.Hsapiens.UCSC.hg19.knownGene_"
version ".tar.gz"))
(sha256
(base32
"1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"))))
(properties
`((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)))
(home-page
"https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/")
(synopsis "Annotation package for human genome in TxDb format")
(description
"This package provides an annotation database of Homo sapiens genome
data. It is derived from the UCSC hg19 genome and based on the \"knownGene\"
track. The database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm9-knowngene")
@ -254,6 +611,41 @@ is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The
database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm10-knowngene")
(version "3.4.4")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"TxDb.Mmusculus.UCSC.mm10.knownGene_"
version ".tar.gz"))
(sha256
(base32
"01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
(properties
`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-genomicfeatures" ,r-genomicfeatures)
("r-annotationdbi" ,r-annotationdbi)))
(home-page
"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/")
(synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
(description
"This package loads a TxDb object, which is an R interface to
prefabricated databases contained in this package. This package provides
the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
(define-public r-biocgenerics
(package
@ -349,6 +741,31 @@ customizable permutation tests to assess the association between genomic
region sets and other genomic features.")
(license license:artistic2.0)))
(define-public r-geneplotter
(package
(name "r-geneplotter")
(version "1.60.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneplotter" version))
(sha256
(base32
"10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-lattice" ,r-lattice)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://bioconductor.org/packages/geneplotter")
(synopsis "Graphics functions for genomic data")
(description
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
(define-public r-diffbind
(package
(name "r-diffbind")
@ -1204,6 +1621,29 @@ Viewer (SAV) files, access data, and generate QC plots.")
sequencing data.")
(license license:gpl2+)))
(define-public r-copynumber
(package
(name "r-copynumber")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "copynumber" version))
(sha256
(base32
"0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-genomicranges" ,r-genomicranges)
("r-biocgenerics" ,r-biocgenerics)))
(home-page "https://bioconductor.org/packages/copynumber")
(synopsis "Segmentation of single- and multi-track copy number data")
(description
"This package segments single- and multi-track copy number data by a
penalized least squares regression method.")
(license license:artistic2.0)))
(define-public r-dnacopy
(package
(name "r-dnacopy")

501
gnu/packages/bioinformatics.scm
View File

@ -1092,7 +1092,7 @@ package provides command line tools using the Bio++ library.")
(define-public blast+
(package
(name "blast+")
(version "2.6.0")
(version "2.7.1")
(source (origin
(method url-fetch)
(uri (string-append
@ -1100,8 +1100,7 @@ package provides command line tools using the Bio++ library.")
version "/ncbi-blast-" version "+-src.tar.gz"))
(sha256
(base32
"15n937pw5aqmyfjb6l387d18grqbb96l63d5xj4l7yyh0zbf2405"))
(patches (search-patches "blast+-fix-makefile.patch"))
"1jlq0afxxgczpp35k6mxh8mn4jzq7vqcnaixk166sfj10wq8v9qh"))
(modules '((guix build utils)))
(snippet
'(begin
@ -1209,6 +1208,7 @@ package provides command line tools using the Bio++ library.")
"include")) ; 33 MB
(inputs
`(("bzip2" ,bzip2)
("lmdb" ,lmdb)
("zlib" ,zlib)
("pcre" ,pcre)
("perl" ,perl)
@ -1770,7 +1770,9 @@ high-throughput sequencing data – with an emphasis on simplicity.")
`(#:tests? #f ; there are no tests
#:make-flags
;; Executables are copied directly to the PREFIX.
(list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin"))
(list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin")
;; Support longer sequences (e.g. Pacbio sequences)
"MAX_SEQ=60000000")
#:phases
(modify-phases %standard-phases
;; No "configure" script
@ -6347,54 +6349,6 @@ between two different types of motif instances using as much relevant
information as possible.")
(license (list license:gpl2+ license:gpl3+))))
(define-public r-copynumber
(package
(name "r-copynumber")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "copynumber" version))
(sha256
(base32
"0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-s4vectors" ,r-s4vectors)
("r-iranges" ,r-iranges)
("r-genomicranges" ,r-genomicranges)
("r-biocgenerics" ,r-biocgenerics)))
(home-page "https://bioconductor.org/packages/copynumber")
(synopsis "Segmentation of single- and multi-track copy number data")
(description
"This package segments single- and multi-track copy number data by a
penalized least squares regression method.")
(license license:artistic2.0)))
(define-public r-geneplotter
(package
(name "r-geneplotter")
(version "1.60.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneplotter" version))
(sha256
(base32
"10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotate" ,r-annotate)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-lattice" ,r-lattice)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "https://bioconductor.org/packages/geneplotter")
(synopsis "Graphics functions for genomic data")
(description
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
(define-public r-genefilter
(package
(name "r-genefilter")
@ -6462,14 +6416,14 @@ distribution.")
(define-public r-dexseq
(package
(name "r-dexseq")
(version "1.28.1")
(version "1.28.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DEXSeq" version))
(sha256
(base32
"0g5w9bn2nb3m670hkcsnhfvvkza2318z9irlhhwhb3n8rdzlsdym"))))
"134znafy7hn38rp4nia4pglz56fz6nbkxrf7z2k1sajfsgxa1hs6"))))
(properties `((upstream-name . "DEXSeq")))
(build-system r-build-system)
(propagated-inputs
@ -6757,38 +6711,6 @@ annotation infrastructure.")
"This package provides a pipeline for the analysis of GRO-seq data.")
(license license:gpl3+)))
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
(version "3.2.2")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/annotation/src/contrib"
"/TxDb.Hsapiens.UCSC.hg19.knownGene_"
version ".tar.gz"))
(sha256
(base32
"1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"))))
(properties
`((upstream-name . "TxDb.Hsapiens.UCSC.hg19.knownGene")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)))
(home-page
"https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/")
(synopsis "Annotation package for human genome in TxDb format")
(description
"This package provides an annotation database of Homo sapiens genome
data. It is derived from the UCSC hg19 genome and based on the \"knownGene\"
track. The database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-sparql
(package
(name "r-sparql")
@ -7317,13 +7239,13 @@ ID and species. It is used by functions in the GenomeInfoDb package.")
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")
(version "1.18.1")
(version "1.18.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDb" version))
(sha256
(base32
"049pyzr8iszv3g7wdqf3pz7vg7bzd450c20ln6fgw4g5xnkkr10s"))))
"07bm35jcczpyxap0b3gky4b28z38z423sngzsm19d9krjxr76b5p"))))
(properties
`((upstream-name . "GenomeInfoDb")))
(build-system r-build-system)
@ -7373,13 +7295,13 @@ CAGE.")
(define-public r-variantannotation
(package
(name "r-variantannotation")
(version "1.28.10")
(version "1.28.11")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version))
(sha256
(base32
"0kxf583cgkdz1shi85r0mpnfxmzi7s5f6srd1czbdl2iibvrm8jn"))))
"19bxi5b9fzqdjadb8bfm8xsgi6nvrwbgn1xcpk59bnmv9vzjkwrh"))))
(properties
`((upstream-name . "VariantAnnotation")))
(inputs
@ -7577,13 +7499,13 @@ powerful online queries from gene annotation to database mining.")
(define-public r-biocparallel
(package
(name "r-biocparallel")
(version "1.16.5")
(version "1.16.6")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BiocParallel" version))
(sha256
(base32
"1164dk0fajb2vrkfpcjs11055qf1cs4vvbnq0aqdaaf2p4lyx41l"))))
"1iv2xzm6lz371z0llhcxl8hmc5jfw0hjwnf1qc8d7jk9djgcaks2"))))
(properties
`((upstream-name . "BiocParallel")))
(build-system r-build-system)
@ -7628,13 +7550,13 @@ biological sequences or sets of sequences.")
(define-public r-rsamtools
(package
(name "r-rsamtools")
(version "1.34.0")
(version "1.34.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "Rsamtools" version))
(sha256
(base32
"01v4bjhj2i126pwyk0v9lvmfp2ih495xsq903k3xa2z24bjxphbi"))))
"02paq7klabdkaf1b8pmmbpmyqsj3yncnfsz62rgka6r4dpsilwk9"))))
(properties
`((upstream-name . "Rsamtools")))
(build-system r-build-system)
@ -7767,13 +7689,13 @@ alignments.")
(define-public r-rtracklayer
(package
(name "r-rtracklayer")
(version "1.42.1")
(version "1.42.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rtracklayer" version))
(sha256
(base32
"1ycmcxvgvszvjv75hlmg0i6pq8i7r8720vgmfayb905s9l6j82x6"))))
"1c76g6h9lx2nm7dvb2zp9dmrpk3vanx3zaz6q9clggpj7yj5lmjd"))))
(build-system r-build-system)
(arguments
`(#:phases
@ -7814,13 +7736,13 @@ as well as query and modify the browser state, such as the current viewport.")
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")
(version "1.34.2")
(version "1.34.4")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFeatures" version))
(sha256
(base32
"0qs94b0ywrjyc9m1jykrbch3lb07576m508dikvx18vwn304mban"))))
"09gc1vbqszrr3ixv4hsfan2l18fcf3gg58783mrfwjv6ci9c4w0d"))))
(properties
`((upstream-name . "GenomicFeatures")))
(build-system r-build-system)
@ -7939,37 +7861,6 @@ dependencies between GO terms can be implemented and applied.")
genome data packages and support for efficient SNP representation.")
(license license:artistic2.0)))
(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
(package
(name "r-bsgenome-hsapiens-1000genomes-hs37d5")
(version "0.99.1")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Hsapiens.1000genomes.hs37d5_"
version ".tar.gz"))
(sha256
(base32
"1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/")
(synopsis "Full genome sequences for Homo sapiens")
(description
"This package provides full genome sequences for Homo sapiens from
1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
(license license:artistic2.0)))
(define-public r-impute
(package
(name "r-impute")
@ -8091,110 +7982,6 @@ genomation package. Included are Chip Seq, Methylation and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Hs.eg.db_" version ".tar.gz"))
(sha256
(base32
"1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
(properties
`((upstream-name . "org.Hs.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
(synopsis "Genome wide annotation for Human")
(description
"This package contains genome-wide annotations for Human, primarily based
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-ce-eg-db
(package
(name "r-org-ce-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Ce.eg.db_" version ".tar.gz"))
(sha256
(base32
"1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
(properties
`((upstream-name . "org.Ce.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
(synopsis "Genome wide annotation for Worm")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model worm Caenorhabditis elegans.")
(license license:artistic2.0)))
(define-public r-org-dm-eg-db
(package
(name "r-org-dm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Dm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"))))
(properties
`((upstream-name . "org.Dm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Dm.eg.db/")
(synopsis "Genome wide annotation for Fly")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model fruit fly Drosophila melanogaster.")
(license license:artistic2.0)))
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Mm.eg.db_" version ".tar.gz"))
(sha256
(base32
"1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"))))
(properties
`((upstream-name . "org.Mm.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Mm.eg.db/")
(synopsis "Genome wide annotation for Mouse")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model mouse Mus musculus.")
(license license:artistic2.0)))
(define-public r-seqlogo
(package
(name "r-seqlogo")
@ -8216,231 +8003,6 @@ plots the corresponding sequence logo as introduced by Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Hsapiens.UCSC.hg19_"
version ".tar.gz"))
(sha256
(base32
"1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"))))
(properties
`((upstream-name . "BSgenome.Hsapiens.UCSC.hg19")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/")
(synopsis "Full genome sequences for Homo sapiens")
(description
"This package provides full genome sequences for Homo sapiens as provided
by UCSC (hg19, February 2009) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm9
(package
(name "r-bsgenome-mmusculus-ucsc-mm9")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm9_"
version ".tar.gz"))
(sha256
(base32
"1birqw30g2azimxpnjfzmkphan7x131yy8b9h85lfz5fjdg7841i"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm9")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm9/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus musculus (Mouse) as
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-mmusculus-ucsc-mm10
(package
(name "r-bsgenome-mmusculus-ucsc-mm10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Mmusculus.UCSC.mm10_"
version ".tar.gz"))
(sha256
(base32
"12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
(properties
`((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
(synopsis "Full genome sequences for Mouse")
(description
"This package provides full genome sequences for Mus
musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm10-knowngene")
(version "3.4.4")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"TxDb.Mmusculus.UCSC.mm10.knownGene_"
version ".tar.gz"))
(sha256
(base32
"01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
(properties
`((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-genomicfeatures" ,r-genomicfeatures)
("r-annotationdbi" ,r-annotationdbi)))
(home-page
"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/")
(synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
(description
"This package loads a TxDb object, which is an R interface to
prefabricated databases contained in this package. This package provides
the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce6_"
version ".tar.gz"))
(sha256
(base32
"0mqzb353xv2c3m3vkb315dkmnxkgczp7ndnknyhpgjlybyf715v9"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce6")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce6/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce10_"
version ".tar.gz"))
(sha256
(base32
"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package
(name "r-bsgenome-dmelanogaster-ucsc-dm3")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Dmelanogaster.UCSC.dm3_"
version ".tar.gz"))
(sha256
(base32
"19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
(properties
`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
(synopsis "Full genome sequences for Fly")
(description
"This package provides full genome sequences for Drosophila
melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
Biostrings objects.")
(license license:artistic2.0)))
(define-public r-motifrg
(package
(name "r-motifrg")
@ -8538,14 +8100,14 @@ secondary structure and comparative analysis in R.")
(define-public r-rhtslib
(package
(name "r-rhtslib")
(version "1.14.0")
(version "1.14.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhtslib" version))
(sha256
(base32
"1h4q54f8za3aaxgy186zf2165sar5c3cgxkk44lq5hzx5pxkl5wn"))))
"13fv78sk5g0gqfl3ks3rps3zc1k66a4lzxvgn36r7ix43yxk7hnr"))))
(properties `((upstream-name . "Rhtslib")))
(build-system r-build-system)
(propagated-inputs
@ -9486,14 +9048,14 @@ proteomics packages.")
(define-public r-mzr
(package
(name "r-mzr")
(version "2.16.1")
(version "2.16.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mzR" version))
(sha256
(base32
"0mlwg646k49klxrznckzfv54a9mz6irj42fqpaaa0xjm6cw2lwaa"))
"19fn58zl59kd0hsjjc6y975y9187nfls0028a4k3v0s9wfg5b3vn"))
(modules '((guix build utils)))
(snippet
'(begin
@ -9514,7 +9076,8 @@ proteomics packages.")
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
#t)))))
(inputs
`(("boost" ,boost) ; use this instead of the bundled boost sources
`(;; XXX Boost 1.69 will not work here.
("boost" ,boost-for-mysql) ; use this instead of the bundled boost sources
("zlib" ,zlib)))
(propagated-inputs
`(("r-biobase" ,r-biobase)
@ -9950,14 +9513,14 @@ Shiny-based display methods for Bioconductor objects.")
(define-public r-annotationhub
(package
(name "r-annotationhub")
(version "2.14.2")
(version "2.14.4")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "AnnotationHub" version))
(sha256
(base32
"17fgrvcnbii9siv5rq5j09bxhqffx47f6jf10418qvr7hh61ic1g"))))
"18v2mk395svq3c19wzi6bjwjfnmrvjqkzmj7cmaji7rx4xdgz6ck"))))
(properties `((upstream-name . "AnnotationHub")))
(build-system r-build-system)
(propagated-inputs
@ -10160,14 +9723,14 @@ originally made available by Holmes, Harris, and Quince, 2012, PLoS ONE 7(2):
(define-public r-ensembldb
(package
(name "r-ensembldb")
(version "2.6.3")
(version "2.6.7")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ensembldb" version))
(sha256
(base32
"0kzdsfk6mdwlp57sw4j2cf7lx5nc67v5j0xr3iag9kzmgikaq1lb"))))
"1wqq0m1fgvgkzq5zr2s9cj2s7qkg9lx3dwwsqixzs5fn52p4dn7f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
@ -10572,14 +10135,14 @@ family of feature/genome hypotheses.")
(define-public r-gviz
(package
(name "r-gviz")
(version "1.26.4")
(version "1.26.5")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Gviz" version))
(sha256
(base32
"0jvcivgw0ahv2rjadxmrww76xambhf7silczmh38nn4yn4qw6w9y"))))
"1dpkcaar7qgzg3vgafvkplprhwmhzpb7ph009kr6ajm36hx4z81c"))))
(properties `((upstream-name . "Gviz")))
(build-system r-build-system)
(propagated-inputs

8
gnu/packages/bootloaders.scm
View File

@ -391,7 +391,6 @@ tree binary files. These are board description files used by Linux and BSD.")
("dtc" ,dtc)
("flex" ,flex)
("lz4" ,lz4)
("openssl" ,openssl)
("python-2" ,python-2)
("python2-coverage" ,python2-coverage)
("python2-pytest" ,python2-pytest)
@ -440,9 +439,14 @@ also initializes the boards (RAM etc).")
(("def test_ctrl_c")
"@pytest.mark.skip(reason='Guix has problems with SIGINT')
def test_ctrl_c"))
;; This test requires a sound system, which is un-used in u-boot-tools.
(for-each (lambda (file)
(substitute* file
;; Disable signatures, due to GPL/Openssl
;; license incompatibilities. See
;; https://bugs.gnu.org/34717 for details.
(("CONFIG_FIT_SIGNATURE=y") "CONFIG_FIT_SIGNATURE=n")
;; This test requires a sound system, which is un-used
;; in u-boot-tools.
(("CONFIG_SOUND=y") "CONFIG_SOUND=n")))
(find-files "configs" "sandbox_.*defconfig$"))
#t))

6
gnu/packages/code.scm
View File

@ -3,7 +3,7 @@
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
@ -371,14 +371,14 @@ stack traces.")
(define-public lcov
(package
(name "lcov")
(version "1.13")
(version "1.14")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/ltp/Coverage%20Analysis"
"/LCOV-" version "/lcov-" version ".tar.gz"))
(sha256
(base32
"08wabnb0gcjqk0qc65a6cgbbmz6b8lvam3p7byh0dk42hj3jr5s4"))))
"06h7ixyznf6vz1qvksjgy5f3q2nw9akf6zx59npf0h3l32cmd68l"))))
(build-system gnu-build-system)
(arguments
'(#:make-flags

10
gnu/packages/compression.scm
View File

@ -686,13 +686,13 @@ sfArk file format to the uncompressed sf2 format.")
(package
(name "libmspack")
(home-page "https://cabextract.org.uk/libmspack/")
(version "0.9.1")
(version "0.10.1")
(source
(origin
(method url-fetch)
(uri (string-append home-page name "-" version "alpha.tar.gz"))
(sha256
(base32 "0h1f5w8rjnq7dcqpqm1mpx5m8q80691kid6f7npqlqwqqzckd8v2"))))
(base32 "13janaqsvm7aqc4agjgd4819pbgqv50j88bh5kci1z70wvg65j5s"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--disable-static")))
@ -949,13 +949,13 @@ smaller than those produced by @code{Xdelta}.")
(package
(name "cabextract")
(home-page "https://cabextract.org.uk/")
(version "1.9")
(version "1.9.1")
(source (origin
(method url-fetch)
(uri (string-append home-page name "-" version ".tar.gz"))
(uri (string-append home-page "cabextract-" version ".tar.gz"))
(sha256
(base32
"1hf4zhjxfdgq9x172r5zfdnafma9q0zf7372syn8hcn7hcypkg0v"))
"19qwhl2r8ip95q4vxzxg2kp4p125hjmc9762sns1dwwf7ikm7hmg"))
(modules '((guix build utils)))
(snippet
'(begin

365
gnu/packages/cran.scm
View File

@ -51,6 +51,7 @@
#:use-module (gnu packages gtk)
#:use-module (gnu packages haskell)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages javascript)
#:use-module (gnu packages lisp)
#:use-module (gnu packages machine-learning)
@ -84,17 +85,39 @@
the system clipboards.")
(license license:gpl3)))
(define-public r-ellipsis
(package
(name "r-ellipsis")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ellipsis" version))
(sha256
(base32
"0pw94qpg81xmsdsagpqxddv7m2cmdszmyyq99dk3caqqj01z7wg6"))))
(build-system r-build-system)
(home-page "https://github.com/hadley/ellipsis")
(synopsis "Tools for working with additional arguments")
(description
"In S3 generics, it's useful to take @code{...} so that methods can have
additional arguments. But this flexibility comes at a cost: misspelled
arguments will be silently ignored. The @code{ellipsis} package is an
experiment that allows a generic to warn if any arguments passed in @code{...}
are not used.")
(license license:gpl3)))
(define-public r-sys
(package
(name "r-sys")
(version "2.1")
(version "3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "sys" version))
(sha256
(base32
"10ml2492bdllh6cz2zl192ip0fdgjkkgayggd3ghswsj5gjv5hrh"))))
"1g0q1f56qmp3x5gja19qrmgk3j4d89yp16z1ziv1jn5p4dlmfpxh"))))
(build-system r-build-system)
(home-page "https://github.com/jeroen/sys")
(synopsis "Powerful and reliable tools for running system commands in R")
@ -133,14 +156,14 @@ read a protected key.")
(define-public r-vegan
(package
(name "r-vegan")
(version "2.5-3")
(version "2.5-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "vegan" version))
(sha256
(base32
"023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c"))))
"1q4khii0xbjwmkida0b35q8rmwhg325qizjwz6slkjhz250a85ji"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
@ -314,14 +337,14 @@ that.")
(define-public r-readxl
(package
(name "r-readxl")
(version "1.2.0")
(version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "readxl" version))
(sha256
(base32
"1mwm389skl4ahcwsmhvx31pjkrn6y9igpnhsczwg6yza886q7j19"))))
"1p7snd8lznyinp0nyg6bsqwn9alh3pnnj77bfg865ingdl1d2yc3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cellranger" ,r-cellranger)
@ -422,13 +445,13 @@ in systems and applications.")
(define-public r-servr
(package
(name "r-servr")
(version "0.11")
(version "0.13")
(source (origin
(method url-fetch)
(uri (cran-uri "servr" version))
(sha256
(base32
"0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"))))
"1n5haqkshrxcx557f1k7nrisvq3wak8v370s2r6yv691b8hvbscs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-httpuv" ,r-httpuv)
@ -616,7 +639,7 @@ and vice-versa.")
(define-public r-shiny
(package
(name "r-shiny")
(version "1.1.0")
(version "1.2.0")
(source
(origin
(method git-fetch)
@ -626,7 +649,7 @@ and vice-versa.")
(file-name (git-file-name name version))
(sha256
(base32
"041q2gzvzs13syfhbirmkik96asdji8dxnnbs63j7v1ks97hrvvz"))))
"1kl3dh68h4cnrm3rqn9pddk5n6bsmr5x0626bkfv0qqi0q92zin4"))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build r-build-system)
@ -677,8 +700,6 @@ and vice-versa.")
(minify source #:target target)))
'(("jqueryui/jquery-ui.js" .
"jqueryui/jquery-ui.min.js")
("showdown/src/showdown.js" .
"showdown/compressed/showdown.js")
("datepicker/js/bootstrap-datepicker.js" .
"datepicker/js/bootstrap-datepicker.min.js")
("ionrangeslider/js/ion.rangeSlider.js" .
@ -974,28 +995,33 @@ applications. That is, compute distances and related measures for angular
(define-public r-ggmap
(package
(name "r-ggmap")
(version "2.6.2")
(version "3.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggmap" version))
(sha256
(base32
"144x6ycb2c3fvy5c68ww53m6gzi6kfvas7cpbn071z08n4xgb72f"))))
"13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
("r-geosphere" ,r-geosphere)
`(("r-bitops" ,r-bitops)
("r-digest" ,r-digest)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-glue" ,r-glue)
("r-httr" ,r-httr)
("r-jpeg" ,r-jpeg)
("r-mapproj" ,r-mapproj)
("r-magrittr" ,r-magrittr)
("r-plyr" ,r-plyr)
("r-png" ,r-png)
("r-proto" ,r-proto)
("r-reshape2" ,r-reshape2)
("r-purrr" ,r-purrr)
("r-rgooglemaps" ,r-rgooglemaps)
("r-rjson" ,r-rjson)
("r-scales" ,r-scales)))
("r-scales" ,r-scales)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
(home-page "https://github.com/dkahle/ggmap")
(synopsis "Spatial visualization with ggplot2")
(description "This package provides a collection of functions to visualize
@ -1007,14 +1033,14 @@ including functions for geolocation and routing.")
(define-public r-haven
(package
(name "r-haven")
(version "2.0.0")
(version "2.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "haven" version))
(sha256
(base32
"12qh8nba1dxlsmcihrx126wmjyj8n511k17vqj10lfgvpwq2sydy"))))
"0x5fwc4q2gdxwwp5sxdd6q17jhpisd769y9kv0xgnjcm0cdwz8f0"))))
(build-system r-build-system)
(inputs
`(("zlib" ,zlib)))
@ -1753,14 +1779,14 @@ plot networks.")
(define-public r-proxy
(package
(name "r-proxy")
(version "0.4-22")
(version "0.4-23")
(source
(origin
(method url-fetch)
(uri (cran-uri "proxy" version))
(sha256
(base32
"0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"))))
"17b6qfllqrhzrxqgx7dccffgybnkcria5a68ap5ly3plg04ypm4x"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/proxy")
(synopsis "Distance and similarity measures")
@ -2004,14 +2030,14 @@ classes in the @code{stats4} package.")
(define-public r-emdbook
(package
(name "r-emdbook")
(version "1.3.10")
(version "1.3.11")
(source
(origin
(method url-fetch)
(uri (cran-uri "emdbook" version))
(sha256
(base32
"0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"))))
"0a515jdzvg87npvrh7md7zp0v5nlz7c2jr7pba5dql6slb0d8j7q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bbmle" ,r-bbmle)
@ -2392,18 +2418,16 @@ dimensioned arrays.")
(define-public r-rmysql
(package
(name "r-rmysql")
(version "0.10.16")
(version "0.10.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "RMySQL" version))
(sha256
(base32
"1gh4b730g2v78jg5iln8fkz808ri2vhnhnw43wzkkjpy53jh48sp"))))
"1xamf99ih44dvaxg5x4ivj0hkqssmabgqd7gh8b8q1srw7yg8kbm"))))
(properties `((upstream-name . "RMySQL")))
(build-system r-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("mariadb" ,mariadb)
("zlib" ,zlib)))
@ -2515,17 +2539,15 @@ multivariate and 5 functional classification problems are included.")
(define-public r-gower
(package
(name "r-gower")
(version "0.1.2")
(version "0.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "gower" version))
(sha256
(base32
"1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"))))
"0x16k0nixgbayh3g4didacn0gmnl5fdfxa0l323phphmimyj49zl"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/markvanderloo/gower")
(synopsis "Gower's distance")
(description
@ -2863,14 +2885,14 @@ Laplace approximation and adaptive Gauss-Hermite quadrature.")
(define-public r-jomo
(package
(name "r-jomo")
(version "2.6-6")
(version "2.6-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "jomo" version))
(sha256
(base32
"1048qb12cx7fs156jcqzwkfmsjadkgnrqd0krznyxpn873zr9lq2"))))
"0lyvi32aikkvwdj0y2hc13kmmi0cw1icg8z9lcw10l8326sxm0vf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lme4" ,r-lme4)
@ -2936,14 +2958,14 @@ analysis of multiply imputed data sets.")
(define-public r-mice
(package
(name "r-mice")
(version "3.3.0")
(version "3.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mice" version))
(sha256
(base32
"1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx"))))
"0rdamj1j9z3kxmi27pc79v6mhh8rgxaxz4xz70ybf8kqh2x66cgm"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
@ -3586,14 +3608,14 @@ iVAT).")
(define-public r-xfun
(package
(name "r-xfun")
(version "0.4")
(version "0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
(base32
"0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv"))))
"1wkrapc490r9l9z6mz623zn9ijq64mckc17xg2s7n3s9yaxj98lb"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/xfun")
(synopsis "Miscellaneous functions")
@ -3694,14 +3716,14 @@ automatically.")
(define-public r-metap
(package
(name "r-metap")
(version "1.0")
(version "1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "metap" version))
(sha256
(base32
"18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"))))
"10kv7z8pik5iy374h399vws0ldf41y2nczlwh8axqf9dcwl084i0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
@ -3719,15 +3741,18 @@ published results; and a routine for graphical display.")
(define-public r-network
(package
(name "r-network")
(version "1.13.0.1")
(version "1.14-377")
(source
(origin
(method url-fetch)
(uri (cran-uri "network" version))
(sha256
(base32
"1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"))))
"0iiy5n17kysrdfs20zr7qald4lwkvws0axi1qkr8f7vzv7w04g01"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
("r-tibble" ,r-tibble)))
(home-page "https://statnet.org/")
(synopsis "Classes for relational data")
(description
@ -3852,14 +3877,14 @@ provides some missing S-PLUS functionality in R.")
(define-public r-ifultools
(package
(name "r-ifultools")
(version "2.0-4")
(version "2.0-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "ifultools" version))
(sha256
(base32
"0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"))))
"040kvbczcmmbaiaz0k0pdq9af541pjj6iwzh1a3w4szh9w6b5a3j"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
@ -4396,14 +4421,14 @@ environment within Shiny.")
(define-public r-radiant-data
(package
(name "r-radiant-data")
(version "0.9.7")
(version "0.9.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "radiant.data" version))
(sha256
(base32
"1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk"))
"17mgm0sggh4f7ihqmj9m3996p3pqc7h2cwx6ll1ha3kg5mx0znyn"))
(modules '((guix build utils)))
(snippet
'(begin
@ -4439,7 +4464,7 @@ environment within Shiny.")
("r-shiny" ,r-shiny)
("r-shinyfiles" ,r-shinyfiles)
("r-shinyace" ,r-shinyace)
("r-summarytools" ,r-summarytools)
("r-stringi" ,r-stringi)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-writexl" ,r-writexl)))
@ -4604,14 +4629,14 @@ specific S3-method.")
(define-public r-vim
(package
(name "r-vim")
(version "4.7.0")
(version "4.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "VIM" version))
(sha256
(base32
"1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"))))
"08x4a4yzgp8adgrv7a3666yma4b60n64mcsnvhzmwdy023f4ysrw"))))
(properties `((upstream-name . "VIM")))
(build-system r-build-system)
(propagated-inputs
@ -4622,6 +4647,7 @@ specific S3-method.")
("r-laeken" ,r-laeken)
("r-mass" ,r-mass)
("r-nnet" ,r-nnet)
("r-ranger" ,r-ranger)
("r-rcpp" ,r-rcpp)
("r-robustbase" ,r-robustbase)
("r-sp" ,r-sp)
@ -4642,14 +4668,14 @@ multivariate plot methods.")
(define-public r-fnn
(package
(name "r-fnn")
(version "1.1.2.2")
(version "1.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "FNN" version))
(sha256
(base32
"09k3k0h9ikbwq6225l7gd0nhimbji722680cr66c8n7zpvxn06mm"))))
"0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"))))
(properties `((upstream-name . "FNN")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/FNN")
@ -4760,14 +4786,14 @@ evaluated by the @dfn{Akaike Information Criterion} (AIC).")
(define-public r-arules
(package
(name "r-arules")
(version "1.6-2")
(version "1.6-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "arules" version))
(sha256
(base32
"0vnss6akk3564kbci3h5rq8ylpckz77cgmflly3gn6fki66f7g96"))))
"0dimrq1pz449z0mz9m87nhm5bpc0v789bcc3lghhh97wwi5zah9y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@ -4855,14 +4881,14 @@ misclassification probabilities of different models.")
(define-public r-zip
(package
(name "r-zip")
(version "1.0.0")
(version "2.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "zip" version))
(sha256
(base32
"0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"))))
"0a86x6a2cy0lkx98yljk9acb6q3ksz9y5acfaqnmbvnn77pibg86"))))
(build-system r-build-system)
(home-page "https://github.com/gaborcsardi/zip")
(synopsis "Cross-platform Zip compression")
@ -4934,14 +4960,14 @@ simple method for converting between file types.")
(define-public r-maptools
(package
(name "r-maptools")
(version "0.9-4")
(version "0.9-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "maptools" version))
(sha256
(base32
"1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k"))))
"1pbvcn9xfx0hxq1ppbfg9xm5j04q4c15nj983yjmg7dlkzq135ax"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreign" ,r-foreign)
@ -4962,14 +4988,14 @@ exchanging spatial objects with other R packages.")
(define-public r-later
(package
(name "r-later")
(version "0.7.5")
(version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "later" version))
(sha256
(base32
"0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i"))))
"08g503xjxrfxvrzj0cavsrz4m8ykbha64344j1w2r6v17js2hakb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
@ -5146,14 +5172,14 @@ obtain a better initial configuration in non-metric MDS.")
(define-public r-reticulate
(package
(name "r-reticulate")
(version "1.10")
(version "1.11.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "reticulate" version))
(sha256
(base32
"0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq"))))
"1cyb92dvv9iibsk28i0gm5hm2xqbsn0y6d67id74c8rhai9y8i9v"))))
(build-system r-build-system)
(inputs `(("python" ,python)))
(propagated-inputs
@ -5238,14 +5264,14 @@ movies, and TV shows.")
(define-public r-ggsignif
(package
(name "r-ggsignif")
(version "0.4.0")
(version "0.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggsignif" version))
(sha256
(base32
"1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"))))
"0z04g5kqdj66fyfxb5d2m7njkqd7idbiy4xgsnxdh5pbh3cr643x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)))
@ -5597,14 +5623,14 @@ references and Rd files.")
(define-public r-officer
(package
(name "r-officer")
(version "0.3.2")
(version "0.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
"14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i"))))
"1ggdp8pbspn24sjshx1h48klivrx401vwk2df49j4wpwxh6dx26y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-base64enc" ,r-base64enc)
@ -5613,6 +5639,7 @@ references and Rd files.")
("r-magrittr" ,r-magrittr)
("r-r6" ,r-r6)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)
("r-uuid" ,r-uuid)
("r-xml2" ,r-xml2)
("r-zip" ,r-zip)))
@ -5760,14 +5787,14 @@ parse and convert strings into cases like snake or camel among others.")
(define-public r-prediction
(package
(name "r-prediction")
(version "0.3.6.1")
(version "0.3.6.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "prediction" version))
(sha256
(base32
"1znxpacd79fjkf84w3493p1vmafanqfxsspwpwpkmda323bsxj0n"))))
"0kx7xbm2j6c8h6gk1iig4vfpg877psg16j74hl7zc2mv40sc6dy5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)))
@ -5897,23 +5924,24 @@ functions.")
(define-public r-flextable
(package
(name "r-flextable")
(version "0.4.6")
(version "0.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "flextable" version))
(sha256
(base32
"0fa42dvf0wyl91w4v0rywm3xgw9n03cfyl28ficrv8iabz4k4382"))))
"0arxgal67ahsq8v0zbvc767qadn7lg3f7mmqa9gjjz6sri0y6gsx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-gdtools" ,r-gdtools)
`(("r-data-table" ,r-data-table)
("r-gdtools" ,r-gdtools)
("r-htmltools" ,r-htmltools)
("r-knitr" ,r-knitr)
("r-magick" ,r-magick)
("r-officer" ,r-officer)
("r-r6" ,r-r6)
("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
("r-stringr" ,r-stringr)
("r-xml2" ,r-xml2)))
(home-page "https://davidgohel.github.io/flextable")
(synopsis "Functions for tabular reporting")
@ -6071,14 +6099,14 @@ and automatically generate usage notices.")
(define-public r-hash
(package
(name "r-hash")
(version "2.2.6")
(version "2.2.6.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "hash" version))
(sha256
(base32
"0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"))))
"0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/hash/")
(synopsis "Implementation of hash/associated arrays/dictionaries")
@ -6306,13 +6334,13 @@ the analyzed items.")
(define-public r-slam
(package
(name "r-slam")
(version "0.1-44")
(version "0.1-45")
(source
(origin
(method url-fetch)
(uri (cran-uri "slam" version))
(sha256
(base32 "11n956kid70931z0qyiql3v7nac1cfkamq44kzf9wl670pf8b033"))))
(base32 "0xvj8va6xd7zkn3l4a5ad7v62s7xmkz8frq7gpcl3b6vqwckkaw4"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/slam/")
(synopsis "Sparse lightweight arrays and matrices")
@ -6791,26 +6819,55 @@ not found in either TASSEL or @code{r-qtl} in addition to visualization of
genotypes as \"graphical genotypes\".")
(license license:gpl3)))
(define-public r-furrr
(package
(name "r-furrr")
(version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "furrr" version))
(sha256
(base32
"1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-future" ,r-future)
("r-globals" ,r-globals)
("r-purrr" ,r-purrr)
("r-rlang" ,r-rlang)))
(home-page "https://github.com/DavisVaughan/furrr")
(synopsis "Apply mapping functions in parallel using futures")
(description
"This package provides implementations of the family of @code{map()}
functions from the @code{purrr} package that can be resolved using any
@code{future}-supported backend, e.g. parallel on the local machine or
distributed on a compute cluster.")
(license license:lgpl2.1+)))
(define-public r-abjutils
(package
(name "r-abjutils")
(version "0.2.1")
(version "0.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "abjutils" version))
(sha256
(base32 "0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b"))))
(base32 "0n4zps65y3zg0gfzlv97w91si52a9izkncirskbkj5x9hk0nhxcv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-devtools" ,r-devtools)
("r-dplyr" ,r-dplyr)
("r-furrr" ,r-furrr)
("r-future" ,r-future)
("r-glue" ,r-glue)
("r-httr" ,r-httr)
("r-magrittr" ,r-magrittr)
("r-plyr" ,r-plyr)
("r-progress" ,r-progress)
("r-purrr" ,r-purrr)
("r-readr" ,r-readr)
("r-rlang" ,r-rlang)
("r-rstudioapi" ,r-rstudioapi)
("r-scales" ,r-scales)
("r-stringi" ,r-stringi)
@ -7110,21 +7167,95 @@ replicating the evaluation as many times as specified, and returning the results
conveniently wrapped into a data frame.")
(license license:gpl2+)))
(define-public r-magick
(package
(name "r-magick")
(version "2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
"18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
("zlib" ,zlib)))
(propagated-inputs
`(("r-curl" ,r-curl)
("r-magrittr" ,r-magrittr)
("r-rcpp" ,r-rcpp)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "https://github.com/ropensci/magick")
(synopsis "Advanced graphics and image-processing in R")
(description
"This package provides bindings to ImageMagick, a comprehensive image
processing library. It supports many common formats (PNG, JPEG, TIFF, PDF,
etc.) and manipulations (rotate, scale, crop, trim, flip, blur, etc). All
operations are vectorized via the Magick++ STL meaning they operate either on
a single frame or a series of frames for working with layers, collages, or
animation. In RStudio, images are automatically previewed when printed to the
console, resulting in an interactive editing environment.")
(license license:expat)))
(define-public r-survey
(package
(name "r-survey")
(version "3.35-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "survey" version))
(sha256
(base32
"1nv4sdfmidvyjgvp3zvn5iw35bb8w0v7095is2pdy8cckkgdvr8i"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
("r-matrix" ,r-matrix)
("r-minqa" ,r-minqa)
("r-numderiv" ,r-numderiv)
("r-survival" ,r-survival)))
(home-page "http://r-survey.r-forge.r-project.org/survey/")
(synopsis "Analysis of complex survey samples")
(description
"This package provides tools for the analysis of complex survey samples.
The provided features include: summary statistics, two-sample tests, rank
tests, generalised linear models, cumulative link models, Cox models,
loglinear models, and general maximum pseudolikelihood estimation for
multistage stratified, cluster-sampled, unequally weighted survey samples;
variances by Taylor series linearisation or replicate weights;
post-stratification, calibration, and raking; two-phase subsampling designs;
graphics; PPS sampling without replacement; principal components, and factor
analysis.")
;; Either version of the GPL.
(license (list license:gpl2 license:gpl3))))
(define-public r-dvmisc
(package
(name "r-dvmisc")
(version "1.1.2")
(version "1.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "dvmisc" version))
(sha256
(base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"))))
(base32 "0x391pxg5mqgp5xxc8qwhwxky8ds7d9gr9iwmsb12c92kxfk00bv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
`(("r-cubature" ,r-cubature)
("r-data-table" ,r-data-table)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-mass" ,r-mass)
("r-mvtnorm" ,r-mvtnorm)
("r-pracma" ,r-pracma)
("r-purrr" ,r-purrr)
("r-rbenchmark" ,r-rbenchmark)
("r-rcpp" ,r-rcpp)))
("r-rcpp" ,r-rcpp)
("r-survey" ,r-survey)))
(home-page "https://cran.r-project.org/web/packages/dvmisc/")
(synopsis "Faster computation of common statistics and miscellaneous functions")
(description
@ -7399,14 +7530,14 @@ packages maintained by Torsten Hothorn.")
(define-public r-multcomp
(package
(name "r-multcomp")
(version "1.4-8")
(version "1.4-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "multcomp" version))
(sha256
(base32
"0fm78g4zjc6ank316qfw977864shmy890znn4fahwc8jjdhpc252"))))
"1kzmdn9jmz5bmhf3wsfr12ljbasmwsgcsfdia52k0bi6q0swdg19"))))
(build-system r-build-system)
(propagated-inputs
`(("r-codetools" ,r-codetools)
@ -7427,18 +7558,19 @@ Hothorn, Westfall, 2010, CRC Press).")
(define-public r-emmeans
(package
(name "r-emmeans")
(version "1.3.2")
(version "1.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
"0mg6y007hfmr601cq4jgxl5ncwbx79kkh7xs2i504m0rinxj8bf5"))))
"1hpal1vq6gryzvgfvv9f328idg0mgjvlfnhaj069dhb7zqfwhzlk"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
("r-mvtnorm" ,r-mvtnorm)
("r-numderiv" ,r-numderiv)
("r-plyr" ,r-plyr)
("r-xtable" ,r-xtable)))
(home-page "https://github.com/rvlenth/emmeans")
@ -7991,23 +8123,27 @@ ways.")
(define-public r-summarytools
(package
(name "r-summarytools")
(version "0.8.8")
(version "0.9.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "summarytools" version))
(sha256
(base32
"0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb"))))
"1q83kii6prqf9z5v8cxj1q2944kx9x7dcxyqix3m883a94dmgivy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
`(("r-checkmate" ,r-checkmate)
("r-dplyr" ,r-dplyr)
("r-htmltools" ,r-htmltools)
("r-lubridate" ,r-lubridate)
("r-magick" ,r-magick)
("r-matrixstats" ,r-matrixstats)
("r-pander" ,r-pander)
("r-pryr" ,r-pryr)
("r-rapportools" ,r-rapportools)
("r-rcurl" ,r-rcurl)))
("r-rcurl" ,r-rcurl)
("r-tidyr" ,r-tidyr)))
(home-page "https://github.com/dcomtois/summarytools")
(synopsis "Tools to quickly and neatly summarize data")
(description
@ -8164,14 +8300,14 @@ analysing multivariate abundance data in community ecology.")
(define-public r-afex
(package
(name "r-afex")
(version "0.22-1")
(version "0.23-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "afex" version))
(sha256
(base32
"065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n"))))
"0yv4s7461swn0116y4wq9v139p1br5rr6hhnq1cmkbvybmwj2vp7"))))
(build-system r-build-system)
(propagated-inputs
`(("r-car" ,r-car)
@ -8189,14 +8325,14 @@ experiments using ANOVA or mixed models.")
(define-public r-lmertest
(package
(name "r-lmertest")
(version "3.0-1")
(version "3.1-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "lmerTest" version))
(sha256
(base32
"0pia69sc8bn37mkiprdf91iilziqb865f94k6x6c26i33fg7rq4m"))))
"1nkz8cmxa5yb8q4i65bmhnn5pd4bhwcyjplyscynb24z3f64xp9b"))))
(properties `((upstream-name . "lmerTest")))
(build-system r-build-system)
(propagated-inputs
@ -8436,14 +8572,14 @@ isosurfaces.")
(define-public r-ks
(package
(name "r-ks")
(version "1.11.3")
(version "1.11.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ks" version))
(sha256
(base32
"0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d"))))
"0d5i8458s8ri9pcx2jm003z1ajk7ha3pmw1sr6lgn6a8d7wgmvqb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fnn" ,r-fnn)
@ -8452,7 +8588,6 @@ isosurfaces.")
("r-matrix" ,r-matrix)
("r-mclust" ,r-mclust)
("r-mgcv" ,r-mgcv)
("r-misc3d" ,r-misc3d)
("r-multicool" ,r-multicool)
("r-mvtnorm" ,r-mvtnorm)))
(home-page "http://www.mvstat.net/tduong/")
@ -8820,14 +8955,14 @@ maps.")
(define-public r-tidytree
(package
(name "r-tidytree")
(version "0.2.1")
(version "0.2.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidytree" version))
(sha256
(base32
"1sx69wvlp7k761cmglrzq2jxkm2iq27x6bhhdcisj62wryj96wb2"))))
"04bznlfs617plv258nmsyq2pywnijcnzy2pbn5b2fgjk2xqkp29w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ape" ,r-ape)
@ -9538,17 +9673,18 @@ and manipulating sets of ontological terms.")
(define-public r-bigrquery
(package
(name "r-bigrquery")
(version "1.0.0")
(version "1.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigrquery" version))
(sha256
(base32
"0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis"))))
"0h2nzyn1w0padpl61l467j7vlkc2wair7sh6p26p94z4zfsnv0i1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-bit64" ,r-bit64)
("r-curl" ,r-curl)
("r-dbi" ,r-dbi)
("r-glue" ,r-glue)
@ -9568,14 +9704,14 @@ and manipulating sets of ontological terms.")
(define-public r-gmp
(package
(name "r-gmp")
(version "0.5-13.2")
(version "0.5-13.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "gmp" version))
(sha256
(base32
"1xd6jjra4niqv1kps91y348lwgvy73p2faxaia4gfzdnrpw7wsxf"))))
"15jifzwbzqcnq2apzvsylkx4k9lillkgblm4wf4wb7y31ys0amph"))))
(build-system r-build-system)
(arguments
'(#:phases
@ -10385,14 +10521,14 @@ model with finite state space using the Aalen-Johansen estimator.")
(define-public r-epi
(package
(name "r-epi")
(version "2.32")
(version "2.35")
(source
(origin
(method url-fetch)
(uri (cran-uri "Epi" version))
(sha256
(base32
"14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm"))))
"1z3959761ryv54y6vsrxxvhrwzz50xrxn55pqh5y7lrxh91zdsvl"))))
(properties `((upstream-name . "Epi")))
(build-system r-build-system)
(propagated-inputs
@ -10444,20 +10580,21 @@ regression coefficients can be conducted via jackknifing.")
(define-public r-huge
(package
(name "r-huge")
(version "1.2.7")
(version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "huge" version))
(sha256
(base32
"134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"))))
"18psr7arynax38hcc5y9dxskhsg4a5zjw3hjbgf96zy59wdib5ch"))))
(build-system r-build-system)
(propagated-inputs
`(("r-igraph" ,r-igraph)
("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)))
("r-matrix" ,r-matrix)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)))
(home-page "https://cran.r-project.org/web/packages/huge")
(synopsis "High-dimensional undirected graph estimation")
(description
@ -10599,14 +10736,14 @@ the local machine to, say, distributed processing on a remote compute cluster.")
(define-public r-future-apply
(package
(name "r-future-apply")
(version "1.1.0")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "future.apply" version))
(sha256
(base32
"0b6v9rxvnnz13sydbgkapw71hx98fwdczjchgqnspjmq2340kdc0"))))
"00ma43ma3byrf9vfqqn9g8sn18c71ryhk7lpza5h7817f1kibw1h"))))
(properties `((upstream-name . "future.apply")))
(build-system r-build-system)
(propagated-inputs

6
gnu/packages/embedded.scm
View File

@ -977,19 +977,19 @@ SPI, I2C, JTAG.")
(define-public fc-host-tools
(package
(name "fc-host-tools")
(version "9a")
(version "10")
(source (origin
(method url-fetch)
(uri (string-append "ftp://ftp.freecalypso.org/pub/GSM/"
"FreeCalypso/fc-host-tools-r" version ".tar.bz2"))
(sha256
(base32
"15w1njlvbzzbr9bwj2hwy8na3a55p1z1cysk5h9iziz9y955ansg"))))
"0ybjqkz1cpnxni66p3valv1bva39vpwzdcc4040lqzx6py9h7h8b"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; No tests exist.
#:make-flags
(list (string-append "INSTBIN=" %output "/bin")
(list (string-append "INSTALL_PREFIX=" %output)
(string-append "INCLUDE_INSTALL_DIR=" %output "include/rvinterf"))
#:phases
(modify-phases %standard-phases

47
gnu/packages/engineering.scm
View File

@ -37,6 +37,7 @@
#:use-module (guix utils)
#:use-module ((srfi srfi-1) #:hide (zip))
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system ant)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
@ -632,6 +633,52 @@ image, etc. Besides viewing Gerbers, you may also view Excellon drill files
as well as pick-place files.")
(license license:gpl2+)))
(define-public translate2geda
;; There has been no formal release yet.
(let ((commit "4c19e7eefa338cea8f1ee999ea8b37f8d0698169")
(revision "1"))
(package
(name "translate2geda")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/erichVK5/translate2geda.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1h062bbpw8nk0jamkya1k4lsgaia796jyviiz2gkdi6k1bxhwgpa"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; there are no tests
#:jar-name "translate2geda.jar"
#:source-dir "."
#:main-class "translate2geda"
#:phases
(modify-phases %standard-phases
(add-after 'install 'install-bin
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(wrapper (string-append bin "/translate2geda")))
(mkdir-p bin)
(with-output-to-file wrapper
(lambda _
(format #t "#!/bin/sh~%exec ~a -jar ~a/share/java/translate2geda.jar"
(which "java") out)))
(chmod wrapper #o555))
#t)))))
(home-page "https://github.com/erichVK5/translate2geda")
(synopsis "Utility for converting symbol and footprint formats to gEDA")
(description
"This package provides a utility for converting Kicad (@file{.mod},
@file{.lib}), Eagle (@file{.lbr}), gerber (@file{.gbr}, etc..),
BXL (@file{.bxl}), IBIS (@file{.ibs}), symdef, LT-Spice (@file{.asc}),
QUCS (@file{.sch}), and BSDL (@file{.bsd}) symbols and footprints and EggBot
fonts to gEDA.")
(license license:gpl2+))))
(define-public libfive
(let ((commit "9d857d1923abecb0e5935b9287d22661f6efaac5")
(revision "2"))

8
gnu/packages/finance.scm
View File

@ -336,7 +336,7 @@ do so.")
(define-public electrum
(package
(name "electrum")
(version "3.3.3")
(version "3.3.4")
(source
(origin
(method url-fetch)
@ -345,7 +345,7 @@ do so.")
version ".tar.gz"))
(sha256
(base32
"0z2zfhyawrbzs0w1426a2w0d4wsajl34ymj77qmpm41138g2ysf2"))
"0h128wklz5qwx5zqzbd48x46kxjxs12wcna9lhak70y5pj2hw8rg"))
(modules '((guix build utils)))
(snippet
'(begin
@ -391,7 +391,7 @@ other machines/servers. Electrum does not download the Bitcoin blockchain.")
(package
(inherit electrum)
(name "electron-cash")
(version "3.3.5")
(version "3.3.6")
(source
(origin
(method url-fetch)
@ -402,7 +402,7 @@ other machines/servers. Electrum does not download the Bitcoin blockchain.")
".tar.gz"))
(sha256
(base32
"185z3c5j9nvl31ga80hvahx7ghvkgmqgfjrrzw1fbs6p9jxy007w"))
"110apc376wm4yd9ghpffiipwdn8rzyr3z7ncpp2516wbz4mmyhxc"))
(modules '((guix build utils)))
(snippet
'(begin

6
gnu/packages/fonts.scm
View File

@ -11,7 +11,7 @@
;;; Copyright © 2016 Jookia <166291@gmail.com>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2016 Dmitry Nikolaev <cameltheman@gmail.com>
;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016 Toni Reina <areina@riseup.net>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
@ -613,7 +613,7 @@ languages, plus Greek and Cyrillic.")
(define-public font-gnu-unifont
(package
(name "font-gnu-unifont")
(version "11.0.03")
(version "12.0.01")
(source (origin
(method url-fetch)
(uri (string-append
@ -621,7 +621,7 @@ languages, plus Greek and Cyrillic.")
version ".tar.gz"))
(sha256
(base32
"171zhm52c4rzpn19qcq4n9nyfbcjl38v50zslhvgpjdcmc5jvhav"))))
"059j82z6z4wqyy3261ns0zg2b2vh2wvxxfbsa9hra9xasism49vb"))))
(build-system gnu-build-system)
(outputs '("out" ; TrueType version
"pcf" ; PCF (bitmap) version

4
gnu/packages/freedesktop.scm
View File

@ -229,7 +229,7 @@ the freedesktop.org XDG Base Directory specification.")
(define-public elogind
(package
(name "elogind")
(version "239.3")
(version "239.4")
(source (origin
(method git-fetch)
(uri (git-reference
@ -238,7 +238,7 @@ the freedesktop.org XDG Base Directory specification.")
(file-name (git-file-name name version))
(sha256
(base32
"1gipnbnlz5k3gxv33wyhi2zd94hlfa9lm360p8z6w5i9s8dzhf52"))))
"106hld2fa89iz0d17gkmwvbkxc2yspn1klq73nvkj4878wx3vcr9"))))
(build-system meson-build-system)
(arguments
`(#:configure-flags

183
gnu/packages/games.scm
View File

@ -11,7 +11,7 @@
;;; Copyright © 2015, 2016 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015 David Hashe <david.hashe@dhashe.com>
;;; Copyright © 2015, 2017, 2018 Christopher Lemmer Webber <cwebber@dustycloud.org>
;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Alex Kost <alezost@gmail.com>
;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
;;; Copyright © 2016, 2017 Rodger Fox <thylakoid@openmailbox.org>
@ -1709,7 +1709,7 @@ match, cannon keep, and grave-itation pit.")
(define minetest-data
(package
(name "minetest-data")
(version "0.4.17")
(version "5.0.0")
(source (origin
(method git-fetch)
(uri (git-reference
@ -1718,7 +1718,7 @@ match, cannon keep, and grave-itation pit.")
(file-name (git-file-name name version))
(sha256
(base32
"1g8iw2pya32ifljbdx6z6rpcinmzm81i9minhi2bi1d500ailn7s"))))
"186i1pna2f3fwa2001y8mw5131h0sndhfdxzfqq2gnr1m83sjm0w"))))
(build-system trivial-build-system)
(native-inputs
`(("source" ,source)))
@ -1743,7 +1743,7 @@ match, cannon keep, and grave-itation pit.")
(define-public minetest
(package
(name "minetest")
(version "0.4.17.1")
(version "5.0.0")
(source (origin
(method git-fetch)
(uri (git-reference
@ -1752,7 +1752,7 @@ match, cannon keep, and grave-itation pit.")
(file-name (git-file-name name version))
(sha256
(base32
"19sfblgh9mchkgw32n7gdvm7a8a9jxsl9cdlgmxn9bk9m939a2sg"))
"1b8n8nzlvmld1hl3zgs1xg4jbc1nsf1m2bn7fi794vdr06s6n911"))
(modules '((guix build utils)))
(snippet
'(begin
@ -4437,7 +4437,7 @@ fish. The whole game is accompanied by quiet, comforting music.")
`(("bison" ,bison)
("flex" ,flex)
("perl" ,perl)
("python" ,python)
("python" ,python-wrapper)
("python-pyyaml" ,python-pyyaml)
("pkg-config" ,pkg-config)))
(arguments
@ -4454,10 +4454,15 @@ fish. The whole game is accompanied by quiet, comforting music.")
"-Csource"))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-python
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "source/util/species-gen.py"
(("python") "python3"))
(add-after 'unpack 'patch-flags
(lambda _
(substitute* "source/Makefile"
(("-mfpmath=sse -msse2") ""))
#t))
(add-after 'unpack 'find-SDL-image
(lambda _
(substitute* "source/windowmanager-sdl.cc"
(("SDL_image.h") "SDL2/SDL_image.h"))
#t))
(delete 'configure)
(replace 'check
@ -6113,3 +6118,161 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.")
(home-page "https://www.stepmania.com")
(license license:expat)))
(define-public btanks
(package
(name "btanks")
(version "0.9.8083")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/btanks/btanks-source/"
"btanks-" version ".tar.bz2"))
(sha256
(base32
"0ha35kxc8xlbg74wsrbapfgxvcrwy6psjkqi7c6adxs55dmcxliz"))))
(build-system scons-build-system)
(arguments
`(#:tests? #f ; there are none
#:scons ,scons-python2
#:scons-flags (list (string-append "prefix=" (assoc-ref %outputs "out")))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'replace-removed-scons-syntax
(lambda _
(substitute* "SConstruct"
(("Options") "Variables")
(("opts.Add\\(BoolOption.*") "opts.Add('gcc_visibility', 'gcc visibility', 'true')")
(("opts.Add\\(EnumOption.*") "opts.Add('mode', 'build mode', 'release')"))
#t))
(add-after 'set-paths 'set-sdl-paths
(lambda* (#:key inputs #:allow-other-keys)
(setenv "CPATH"
(string-append (assoc-ref inputs "sdl")
"/include/SDL"))
#t))
(add-after 'unpack 'fix-compilation-errors
(lambda _
(substitute* "mrt/base_file.h"
(("#include <string>" m)
(string-append m "\n#include <sys/types.h>")))
(substitute* '("engine/sl08/sl08.h"
"engine/sl08/sl08.py")
(("signal = NULL") "signal = 0")
(("object\\(NULL\\)") "object(0)")
(("func\\(NULL\\)") "func(0)")
((" connect\\(signal_ref\\)")
" this->connect(signal_ref)"))
(substitute* "math/range_list.h"
((" lower_bound\\(value\\)")
" this->lower_bound(value)")
((" erase\\(i\\)")
" this->erase(i)"))
(substitute* "clunk/source.cpp"
(("using namespace clunk" m)
(string-append "# define pow10f(x) exp10f(x)\n" m)))
#t))
(add-after 'unpack 'find-lua
(lambda _
(substitute* "engine/SConscript"
(("lua5.1") "lua-5.1")
(("bt_libs.append\\(lua\\)")
"bt_libs.append(\"lua\")"))
#t)))))
(inputs
`(("expat" ,expat)
("glu" ,glu)
("libsmpeg" ,libsmpeg-with-sdl1)
("libvorbis" ,libvorbis)
("lua51" ,lua-5.1)
("sdl" ,(sdl-union (list sdl
sdl-mixer
sdl-image
sdl-ttf)))
("zlib" ,zlib)))
(native-inputs
`(("pkg-config" ,pkg-config)
("zip" ,zip)))
(home-page "http://btanks.sourceforge.net")
(synopsis "Multiplayer tank battle game")
(description "Battle Tanks is a funny battle game, where you can choose
one of three vehicles and eliminate your enemy using the whole arsenal of
weapons. It has original cartoon-like graphics and cool music, it’s fun and
dynamic, it has several network modes for deathmatch and cooperative.")
;; Some parts (e.g. mrt/b64.cpp) are LGPLv2.1+, but the whole package is
;; released under GPLv2 or later. It comes with extra exceptions for the
;; developers.
(license (list license:gpl2+ license:lgpl2.1+))))
(define-public slingshot
(package
(name "slingshot")
(version "0.9")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ryanakca/slingshot.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"19m8b6nsi786bc6gmkp185mwri3r5y249gjmqd5qsc23nnfhgrs1"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2))
(inputs
`(("python-pygame" ,python2-pygame)))
(home-page "https://github.com/ryanakca/slingshot")
(synopsis "Simple 2D shooting strategy game set in space")
(description "Slingshot is a two-dimensional strategy game where two
players attempt to shoot one another through a section of space populated by
planets. The main feature of the game is that the shots, once fired, are
affected by the gravity of the planets.")
(license license:gpl2+)))
(define-public 4dtris
(package
(name "4dtris")
(version "0.4.3")
(source
(origin
(method url-fetch)
(uri (string-append "https://launchpad.net/4dtris/"
(version-major+minor version)
"/" version "/+download/4dtris_"
version ".orig.tar.gz"))
(sha256
(base32
"1nfkhcm0l89jyw8yr65na97g4l385zhjf7whkyg47c3v5sdqq2g7"))))
(build-system gnu-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-install-directories
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(substitute* "Makefile.in"
(("bindir = /usr/games")
(string-append "bindir = " out "/bin"))
(("/usr/share/applications")
(string-append out "/share/applications"))
(("/usr/share/games/4dtris")
(string-append out "/share/4dtris"))))
#t))
(add-after 'set-paths 'set-sdl-paths
(lambda* (#:key inputs #:allow-other-keys)
(setenv "CPATH"
(string-append (assoc-ref inputs "sdl")
"/include/SDL"))
#t)))))
(inputs
`(("fontconfig" ,fontconfig)
("freeglut" ,freeglut)
("sdl" ,(sdl-union (list sdl sdl-ttf)))))
(home-page "https://launchpad.net/4dtris/")
(synopsis "4D Tetris")
(description "4D-TRIS is an alteration of the well-known Tetris game. The
game field is extended to 4D space, which has to filled up by the gamer with
4D hyper cubes.")
(license license:gpl3)))

16
gnu/packages/gnunet.scm
View File

@ -148,14 +148,14 @@ tool to extract metadata from a file and print the results.")
(define-public libmicrohttpd
(package
(name "libmicrohttpd")
(version "0.9.62")
(version "0.9.63")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/libmicrohttpd/libmicrohttpd-"
version ".tar.gz"))
(sha256
(base32
"0jfvi1fb4im3a3m8qishbmzx3zch993c0mhvl2k92l1zf1yhjgmx"))))
"173lj66crwvhzwp1r812sc5h1hda7g6lb9l1y5zf7w3pw4dnzhrp"))))
(build-system gnu-build-system)
(inputs
`(("curl" ,curl)
@ -163,18 +163,6 @@ tool to extract metadata from a file and print the results.")
("libgcrypt" ,libgcrypt)
("openssl" ,openssl)
("zlib" ,zlib)))
(arguments
`(#:parallel-tests? #f
#:phases (modify-phases %standard-phases
(add-before 'check 'add-missing-LDFLAGS
(lambda _
;; The two test_upgrade* programs depend on GnuTLS
;; directly but lack -lgnutls; add it.
(substitute* "src/microhttpd/Makefile"
(("^test_upgrade(.*)LDFLAGS = (.*)$" _ first rest)
(string-append "test_upgrade" first
"LDFLAGS = -lgnutls " rest)))
#t)))))
(synopsis "C library implementing an HTTP 1.1 server")
(description
"GNU libmicrohttpd is a small, embeddable HTTP server implemented as a

6
gnu/packages/graph.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@ -100,14 +100,14 @@ more.")
(define-public r-igraph
(package
(name "r-igraph")
(version "1.2.2")
(version "1.2.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "igraph" version))
(sha256
(base32
"1bggm7b8v3bh7q2589w26qvd7sgs69m4qiij7d0rbm0ykkgxm8lx"))))
"1jwjjl0l4054w05bik17p2d6rj3lx68iv716phajhnbbmckfnj0h"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))

40
gnu/packages/guile-xyz.scm
View File

@ -2057,3 +2057,43 @@ for people new to Emacs. Features include: CUA mode, Geiser, tool bar icons
to evaluate Guile buffers, support for Guile's very own picture language, code
completion, a simple mode line, etc.")
(license license:gpl3+))))
(define-public guile-stis-parser
(let ((commit "6e85d37ffc333b722f4413a6c648263701eb75bd")
(revision "1"))
(package
(name "guile-stis-parser")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/tampe/stis-parser")
(commit commit)))
(sha256
(base32
"0v4hvq7rlpbra1ni73lf8k6sdmjlflr50yi3p1f24g85h77pc7c0"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-build? #f ; not supported
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'chdir
(lambda _ (chdir "modules") #t))
(add-after 'chdir 'delete-broken-symlink
(lambda _
(delete-file "parser/stis-parser/lang/.#calc.scm")
#t)))))
(inputs
`(("guile" ,guile-2.2)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("pkg-config" ,pkg-config)))
(home-page "https://gitlab.com/tampe/stis-parser")
(synopsis "Parser combinator framework")
(description
"This package provides a functional parser combinator library that
supports backtracking and a small logical framework. The idea is to build up
chunks that are memoized and there is no clear scanner/parser separation,
chunks can be expressions as well as simple tokens.")
(license license:lgpl2.0+))))

93
gnu/packages/hyperledger.scm Normal file
View File

@ -0,0 +1,93 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages hyperledger)
#:use-module (ice-9 match)
#:use-module (guix build-system go)
#:use-module (guix build-system trivial)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix licenses)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages curl)
#:use-module (gnu packages docker)
#:use-module (gnu packages golang)
#:use-module (gnu packages version-control))
(define-public hyperledger-fabric
(package
(name "hyperledger-fabric")
(version "1.4")
;; While the GitHub repository is supposed to be "just a mirror," the Go
;; imports refer to it explicitly.
(home-page "https://github.com/hyperledger/fabric")
(source (origin
(method git-fetch)
(uri (git-reference
(url home-page)
(commit (string-append "release-" version))))
(sha256
(base32
"1g003wf6439f2c9i2vphf4sh463yyasq1vpqmkpw9lj170a6kl8k"))
(file-name (git-file-name name version))))
(build-system go-build-system)
(native-inputs
`(("which" ,which)
("docker-cli" ,docker-cli)
("git" ,git)
("curl" ,curl)))
(arguments
`(#:import-path "github.com/hyperledger/fabric"
#:unpack-path "github.com/hyperledger/fabric"
;; We don't need to install the source code for end-user applications.
#:install-source? #f
;; TODO: Tests require a running Docker daemon.
#:tests? #f
#:phases
(modify-phases %standard-phases
(replace 'build
(lambda _
;; Only linux-amd64 and linux-ppc64le seem to be supported at the moment.
(invoke "make"
"-j" (number->string (parallel-job-count))
"-C" "src/github.com/hyperledger/fabric"
"release/linux-amd64")))
(add-after 'install 'install-commands
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out"))
(src "src/github.com/hyperledger/fabric/"))
(with-directory-excursion src
(copy-recursively
"release/linux-amd64/bin"
(string-append out "/bin"))
(install-file "LICENSE"
(string-append out "/share/licenses"))
(install-file "README.md"
(string-append out "/share/doc"))
(copy-recursively "sampleconfig"
(string-append out "/etc/hyperledger/fabric"))))
#t)))))
(supported-systems '("x86_64-linux"))
(synopsis "Platform for distributed ledger solutions")
(description "Hyperledger Fabric is a platform for distributed ledger
solutions, underpinned by a modular architecture focusing on confidentiality
and resiliency. It is designed to support pluggable implementations of
different components.")
(license asl2.0)))

10
gnu/packages/ibus.scm
View File

@ -144,18 +144,20 @@
(native-inputs
`(("glib" ,glib "bin") ; for glib-genmarshal
("gobject-introspection" ,gobject-introspection) ; for g-ir-compiler
;; XXX TODO: Move Unicode data to its own (versioned) package.
("unicode-nameslist"
,(origin
(method url-fetch)
(uri "https://www.unicode.org/Public/UNIDATA/NamesList.txt")
(uri "https://www.unicode.org/Public/12.0.0/ucd/NamesList.txt")
(sha256
(base32 "0yr2h0nfqhirfi3bxl33z6cc94qqshlpgi06c25xh9754irqsgv8"))))
(base32 "0vsq8gx7hws8mvxy3nlglpwxw7ky57q0fs09d7w9xgb2ylk7fz61"))))
("unicode-blocks"
,(origin
(method url-fetch)
(uri "https://www.unicode.org/Public/UNIDATA/Blocks.txt")
(uri "https://www.unicode.org/Public/12.0.0/ucd/Blocks.txt")
(sha256
(base32 "0lnh9iazikpr548bd7nkaq9r3vfljfvz0rg2462prac8qxk7ni8b"))))
(base32 "041sk54v6rjzb23b9x7yjdwzdp2wc7gvfz7ybavgg4gbh51wm8x1"))))
("vala" ,vala)
("pkg-config" ,pkg-config)))
(native-search-paths

27
gnu/packages/java.scm
View File

@ -5984,6 +5984,33 @@ and contributes the Eclipse default text editor.")
development tools.")
(license license:epl1.0)))
(define-public java-eclipse-jdt-compiler-apt
(package
(name "java-eclipse-jdt-compiler-apt")
(version "1.3.400")
(source (origin
(method url-fetch)
(uri (string-append "https://repo1.maven.org/maven2/"
"org/eclipse/jdt/org.eclipse.jdt.compiler.apt/"
version "/org.eclipse.jdt.compiler.apt-"
version "-sources.jar"))
(sha256
(base32
"1s285k9p2ixdqrknb40jbbvw682n9a7l5lqpn583a8pvlzg2l6r8"))))
(build-system ant-build-system)
(arguments
`(#:tests? #f ; no tests included
#:jar-name "eclipse-jdt-compiler-apt.jar"
#:jdk ,openjdk11))
(inputs
`(("java-eclipse-jdt-core" ,java-eclipse-jdt-core)))
(home-page "https://www.eclipse.org/jdt/apt/")
(synopsis "Annotation processing tool")
(description "APT stands for Annotation Processing Tool. APT provides a
means for generating files and compiling new Java classes based on annotations
found in your source code.")
(license license:epl2.0)))
(define-public java-javax-mail
(package
(name "java-javax-mail")

36
gnu/packages/linux.scm
View File

@ -24,7 +24,7 @@
;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2017 nee <nee-git@hidamari.blue>
;;; Copyright © 2017 Dave Love <fx@gnu.org>
;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
@ -414,10 +414,10 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration."
It has been modified to remove all non-free binary blobs.")
(license license:gpl2)))
(define %linux-libre-version "4.20.13")
(define %linux-libre-hash "00rqdsqyz0csdblcmifyhkgzvsmnqsh090i6h30146rsf3707xad")
(define %linux-libre-version "5.0")
(define %linux-libre-hash "18gs0kl5xvbmh725m7crg6iyqw3p8qq421aql7z0nlk035fh5xbx")
(define %linux-libre-4.20-patches
(define %linux-libre-5.0-patches
(list %boot-logo-patch
%linux-libre-arm-export-__sync_icache_dcache-patch))
@ -425,11 +425,11 @@ It has been modified to remove all non-free binary blobs.")
(make-linux-libre %linux-libre-version
%linux-libre-hash
'("x86_64-linux" "i686-linux" "armhf-linux" "aarch64-linux")
#:patches %linux-libre-4.20-patches
#:patches %linux-libre-5.0-patches
#:configuration-file kernel-config))
(define %linux-libre-4.19-version "4.19.26")
(define %linux-libre-4.19-hash "0xp1hqcwimyvzzbci741vymc8mrgk3cycv8l020zas1dfw5wn48c")
(define %linux-libre-4.19-version "4.19.27")
(define %linux-libre-4.19-hash "055n4s4yrkcrwkdsxbf1q1zyxmpabf7kba8d0phpfadian3wr4s0")
(define %linux-libre-4.19-patches
(list %boot-logo-patch
@ -442,8 +442,8 @@ It has been modified to remove all non-free binary blobs.")
#:patches %linux-libre-4.19-patches
#:configuration-file kernel-config))
(define %linux-libre-4.14-version "4.14.104")
(define %linux-libre-4.14-hash "0x7jzazl0yzdc9m1ycwcywjpj6w30mabks4qs9asdy5622282b4v")
(define %linux-libre-4.14-version "4.14.105")
(define %linux-libre-4.14-hash "06pp13d2g0j2v8jy8fh20b4ismzg9wn3i7bnx2hpyvslz256rrgg")
(define-public linux-libre-4.14
(make-linux-libre %linux-libre-4.14-version
@ -452,8 +452,8 @@ It has been modified to remove all non-free binary blobs.")
#:configuration-file kernel-config))
(define-public linux-libre-4.9
(make-linux-libre "4.9.161"
"0r35qlc8yj9svryv0v91j134vr35d23sz5aj7f2h8c99iakbm6zw"
(make-linux-libre "4.9.162"
"07swv6xvjsl5nv5y3sc2nfdnmqdz9gjy8hgrjvi0bljwzf1fbxmy"
'("x86_64-linux" "i686-linux")
#:configuration-file kernel-config))
@ -467,7 +467,7 @@ It has been modified to remove all non-free binary blobs.")
(make-linux-libre %linux-libre-version
%linux-libre-hash
'("armhf-linux")
#:patches %linux-libre-4.20-patches
#:patches %linux-libre-5.0-patches
#:defconfig "multi_v7_defconfig"
#:extra-version "arm-generic"))
@ -490,7 +490,7 @@ It has been modified to remove all non-free binary blobs.")
(make-linux-libre %linux-libre-version
%linux-libre-hash
'("armhf-linux")
#:patches %linux-libre-4.20-patches
#:patches %linux-libre-5.0-patches
#:defconfig "omap2plus_defconfig"
#:extra-version "arm-omap2plus"))
@ -3283,8 +3283,8 @@ write access to exFAT devices.")
(synopsis "Mount ISO file system images")
(description
"FuseISO is a FUSE module to mount ISO filesystem images (.iso, .nrg,
.bin, .mdf and .img files). It currently support plain ISO9660 Level 1 and 2,
Rock Ridge, Joliet, and zisofs.")
.bin, .mdf and .img files). It supports plain ISO9660 Level 1 and 2, Rock
Ridge, Joliet, and zisofs.")
(license license:gpl2)))
(define-public gpm
@ -4449,7 +4449,7 @@ used by nftables.")
(define-public nftables
(package
(name "nftables")
(version "0.8.1")
(version "0.9.0")
(source
(origin
(method url-fetch)
@ -4457,8 +4457,10 @@ used by nftables.")
"/files/nftables-" version ".tar.bz2"))
(sha256
(base32
"1i1gfy8l7qyhc5vlrpp63s0n5kybmc9pi4dywiq8rmkhrrnddsla"))))
"14bygs6vg2v448cw5r4pxqi8an29hw0m9vab8hpmgjmrzjsq30dd"))))
(build-system gnu-build-system)
(arguments `(#:configure-flags
'("--disable-man-doc"))) ; FIXME: Needs docbook2x.
(inputs `(("bison" ,bison)
("flex" ,flex)
("gmp" ,gmp)

23
gnu/packages/machine-learning.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
@ -371,6 +371,24 @@ value imputation, classifier creation, generalization error estimation and
sample proximities between pairs of cases.")
(license license:gpl3+)))
(define-public openfst
(package
(name "openfst")
(version "1.7.1")
(source (origin
(method url-fetch)
(uri (string-append "http://www.openfst.org/twiki/pub/FST/"
"FstDownload/openfst-" version ".tar.gz"))
(sha256
(base32
"0x9wfcqd8hq4h349s7j77sr60h8xjdfshqw1m3a2n6z5bdr9qkm1"))))
(build-system gnu-build-system)
(home-page "http://www.openfst.org")
(synopsis "Library for weighted finite-state transducers")
(description "OpenFst is a library for constructing, combining,
optimizing, and searching weighted finite-state transducers (FSTs).")
(license license:asl2.0)))
(define-public shogun
(package
(name "shogun")
@ -885,7 +903,8 @@ interactive learning.")
"1q8c34rpmwkfy3r4d5172pzdkpfryj561897z9r3x22gq7813x1m"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2)) ; only Python 2.7 is supported
`(#:tests? #f ; some test files are missing
#:python ,python-2)) ; only Python 2.7 is supported
(propagated-inputs
`(("python2-numpy" ,python2-numpy)
("python2-scipy" ,python2-scipy)

210
gnu/packages/mail.scm
View File

@ -46,6 +46,7 @@
(define-module (gnu packages mail)
#:use-module (gnu packages)
#:use-module (gnu packages admin)
#:use-module (gnu packages aspell)
#:use-module (gnu packages autotools)
#:use-module (gnu packages backup)
@ -225,6 +226,87 @@ software.")
;; Libraries are under LGPLv3+, and programs under GPLv3+.
(list gpl3+ lgpl3+))))
(define-public nullmailer
(package
(name "nullmailer")
(version "2.2")
(source
(origin
(method url-fetch)
(uri (list
(string-append "https://untroubled.org/nullmailer/"
"nullmailer-" version ".tar.gz")
;; Previous releases are moved to this subdirectory.
(string-append "https://untroubled.org/nullmailer/archive/"
"nullmailer-" version ".tar.gz")))
(sha256
(base32 "0md8cf90fl2yf3zh9njjy42a673v4j4ygyq95xg7fzkygdigm1lq"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list "--enable-tls"
"--localstatedir=/var"
"--sysconfdir=/etc")
#:phases
(modify-phases %standard-phases
(add-before 'check 'patch-test-FHS-file-names
(lambda _
(with-directory-excursion "test"
(substitute* (list "functions.in"
"tests/send")
;; Fix some shebangs later generated on the fly.
(("/bin/sh") (which "bash"))))
#t))
(add-before 'check 'pass-PATH-to-tests
;; ‘runtest’ launches each test through ‘env -’, clearing $PATH. The
;; tests then source ‘functions’, which first demands a working $PATH
;; only to clobber it later. Pass our $PATH to the test environment
;; and don't touch it after that.
(lambda _
(with-directory-excursion "test"
(substitute* "runtests"
(("env - bash")
(string-append "env - PATH=\"" (getenv "PATH") "\" bash")))
(substitute* "functions.in"
(("export PATH=.*") "")))
#t))
(add-before 'check 'delete-failing-tests
(lambda _
(with-directory-excursion "test/tests"
(for-each delete-file
(list
;; XXX ‘nullmailer-inject: nullmailer-queue failed: 15’
"inject/queue"
;; XXX These require the not-yet-packaged tcpserver.
"protocols" "smtp-auth")))
#t))
(add-before 'install 'skip-install-data-local
;; Don't attempt to install run-time files outside of the store.
(lambda _
(substitute* "Makefile"
((" install-data-local") ""))
#t)))))
(native-inputs
;; For tests.
`(("daemontools" ,daemontools))) ; for svc
(inputs
`(("gnutls" ,gnutls)))
(home-page "https://untroubled.org/nullmailer/")
(synopsis "Simple relay-only mail transfer agent")
(description
"Nullmailer is a simple replacement @acronym{MTA, Mail Transfer Agent} for
hosts that receive no local mail and only relay mail to a fixed set of smart
relays. It's useful for systems such as Web servers that must be able to send
email notifications, without having to run a full-blown MTA such as sendmail
or qmail.
Nullmailer is designed to be simple to configure, easy to extend, and secure.
It requires little ongoing administration. The included @command{sendmail}
emulator front-end should allow most (if not all) sendmail-compatible programs
to run without any changes.")
(license (list lgpl2.1+ ; lib/cli++/ (but some files lack headers)
gpl2+)))) ; everything else
(define-public fetchmail
(package
(name "fetchmail")
@ -757,14 +839,14 @@ invoking @command{notifymuch} from the post-new hook.")
(define-public notmuch
(package
(name "notmuch")
(version "0.28.2")
(version "0.28.3")
(source (origin
(method url-fetch)
(uri (string-append "https://notmuchmail.org/releases/notmuch-"
version ".tar.gz"))
(sha256
(base32
"0cg9ff7h7mklgbqqknxigxxx1j3p3s2a9cxvrs5ih7j56f04k9l5"))))
"1v0ff6qqwj42p3n6qw30czzqi52nvgf3dn05vd7a03g39a5js8af"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
@ -1200,16 +1282,15 @@ facilities for checking incoming mail.")
(define-public dovecot
(package
(name "dovecot")
(version "2.3.4.1")
(version "2.3.5")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.dovecot.org/releases/"
(version-major+minor version) "/"
name "-" version ".tar.gz"))
"dovecot-" version ".tar.gz"))
(sha256
(base32
"01xa8d08c0j51w5kmqb3vnzrvh17hkzx5a5p7fb5hgn3wln3x1xq"))))
(base32 "1zxa9banams9nmk99sf1rqahr11cdqxhwi7hyz3ddxqidpn15qdz"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
@ -1222,28 +1303,26 @@ facilities for checking incoming mail.")
(arguments
`(#:configure-flags '("--sysconfdir=/etc"
"--localstatedir=/var")
#:phases (modify-phases %standard-phases
(add-before
'configure 'pre-configure
(lambda _
;; Simple hack to avoid installing in /etc.
(substitute* '("doc/Makefile.in"
"doc/example-config/Makefile.in")
(("pkgsysconfdir = .*")
"pkgsysconfdir = /tmp/etc"))
#t))
(add-after
'unpack 'patch-other-file-names
(lambda _
(substitute*
"src/lib-program-client/test-program-client-local.c"
(("(/bin/| )cat") (which "cat"))
(("/bin/echo") (which "echo"))
(("/bin/false") (which "false"))
(("/bin/sh") (which "bash"))
(("head") (which "head"))
(("sleep") (which "sleep")))
#t)))))
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-file-names
(lambda _
(substitute* "src/lib-program-client/test-program-client-local.c"
(("(/bin/| )cat") (which "cat"))
(("/bin/echo") (which "echo"))
(("/bin/false") (which "false"))
(("/bin/sh") (which "bash"))
(("head") (which "head"))
(("sleep") (which "sleep")))
(substitute* (list "src/lib-smtp/test-bin/sendmail-exit-1.sh"
"src/lib-smtp/test-bin/sendmail-success.sh")
(("cat") (which "cat")))
#t))
(replace 'install
(lambda* (#:key make-flags #:allow-other-keys)
;; Simple hack to avoid installing a trivial README in /etc.
(apply invoke "make" "install" "sysconfdir=/tmp/bogus"
make-flags))))))
(home-page "https://www.dovecot.org")
(synopsis "Secure POP3/IMAP server")
(description
@ -2045,6 +2124,81 @@ e-mails with other systems speaking the SMTP protocol.")
(license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING")
public-domain isc license:openssl))))
;; OpenSMTPd 6.4 introduced a new and incompatible configuration file format.
;; Use a different name, for now, to avoid auto-upgrades and broken mail boxes.
;; OPENSMTP-CONFIGURATION in (gnu services mail) will also need an overhaul.
(define-public opensmtpd-next
(package
(name "opensmtpd-next")
(version "6.4.1p2")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.opensmtpd.org/archives/"
"opensmtpd-" version ".tar.gz"))
(sha256
(base32 "0cppqlx4fk6l8rbim5symh2fm1kzshf421256g596j6c9f9q96xn"))))
(build-system gnu-build-system)
(inputs
`(("bdb" ,bdb)
("libasr" ,libasr)
("libevent" ,libevent)
("libressl" ,libressl)
("linux-pam" ,linux-pam)
("zlib" ,zlib)))
(native-inputs
`(("bison" ,bison)
("groff" ,groff))) ; for man pages
(arguments
`(#:configure-flags
(list "--localstatedir=/var"
;; This is the default only if it exists at build time—it doesn't.
"--with-path-socket=/var/run"
"--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt"
"--with-user-smtpd=smtpd"
"--with-user-queue=smtpq" "--with-group-queue=smtpq"
"--with-auth-pam"
"--with-table-db")
#:phases
(modify-phases %standard-phases
;; Fix some incorrectly hard-coded external tool file names.
(add-after 'unpack 'patch-FHS-file-names
(lambda _
(substitute* "smtpd/smtpctl.c"
;; ‘gzcat’ is auto-detected at compile time, but ‘cat’ isn't.
(("/bin/cat") (which "cat")))
(substitute* "smtpd/mda_unpriv.c"
(("/bin/sh") (which "sh")))
#t))
;; OpenSMTPD provides a single smtpctl utility to control both the
;; daemon and the local submission subsystem. To accomodate systems
;; that require historical interfaces such as sendmail, newaliases or
;; makemap, smtpctl operates in compatibility mode if called with the
;; historical name.
(add-after 'install 'install-compability-links
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(sbin (string-append out "/sbin/")))
(for-each (lambda (command)
(symlink "smtpctl" (string-append sbin command)))
(list "mailq" "makemap" "newaliases"
"send-mail" "sendmail")))
#t)))))
(synopsis "Lightweight SMTP daemon")
(description
"OpenSMTPD is an implementation of server-side @acronym{SMTP, Simple Mail
Transfer Protocol}, with some additional standard extensions. It allows
ordinary machines to exchange e-mails with other systems speaking the SMTP
protocol, or to deliver them to local users.
In order to simplify the use of SMTP, OpenSMTPD implements a smaller set of
functionality than those available in other SMTP daemons. The objective is to
provide enough features to satisfy typical usage at the risk of unsuitability
to esoteric or niche requirements.")
(home-page "https://www.opensmtpd.org")
(license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING")
public-domain isc license:openssl))))
(define-public opensmtpd-extras
(package
(name "opensmtpd-extras")

25
gnu/packages/man.scm
View File

@ -161,20 +161,17 @@ the traditional flat-text whatis databases.")
(define-public man-pages
(package
(name "man-pages")
(version "4.16")
(source (origin
(method url-fetch)
(uri
(list
(string-append
"mirror://kernel.org/linux/docs/man-pages/man-pages-"
version ".tar.xz")
(string-append
"mirror://kernel.org/linux/docs/man-pages/Archive/"
"man-pages-" version ".tar.xz")))
(sha256
(base32
"1d2d6llazg3inwjiz22cn46mbm5ydpbyh9qb55z4j3nm4w6wrzs7"))))
(version "5.00")
(source
(origin
(method url-fetch)
(uri
(list (string-append "mirror://kernel.org/linux/docs/man-pages/"
"man-pages-" version ".tar.xz")
(string-append "mirror://kernel.org/linux/docs/man-pages/Archive/"
"man-pages-" version ".tar.xz")))
(sha256
(base32 "006rcqhs4ay9q8wip2kbgk3065gwvfbzrqgv2dsydwvcnwv50bss"))))
(build-system gnu-build-system)
(arguments
'(#:phases (modify-phases %standard-phases (delete 'configure))

10
gnu/packages/maths.scm
View File

@ -8,7 +8,7 @@
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016, 2018 Kei Kebreau <kkebreau@posteo.net>
@ -148,19 +148,19 @@ beginners.")
(define-public c-graph
(package
(name "c-graph")
(version "2.0")
(version "2.0.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/c-graph/c-graph-" version
".tar.gz"))
(sha256 (base32
"1hlvpzrh7hzzf533diyfiabzskddi8zx92av9hwkjw3l46z7qv01"))))
"092412jzxy6wdvpk96pfj499hpmaww8xllavbvlqspfpr7ips9id"))))
(build-system gnu-build-system)
(inputs
`(("fortran" ,gfortran)))
`(("fortran" ,gfortran)))
(synopsis "Visualizing and demonstrating convolution")
(description
"GNU C-Graph is a tool for demonstrating the theory of convolution.
"GNU C-Graph is a tool for demonstrating the theory of convolution.
Thus, it can serve as an excellent aid to students of signal and systems
theory in visualizing the convolution process. Rather than forcing the
student to write code, the program offers an intuitive interface with

50
gnu/packages/music.scm
View File

@ -1306,7 +1306,7 @@ users to select LV2 plugins and run them with jalv.")
(define-public synthv1
(package
(name "synthv1")
(version "0.9.2")
(version "0.9.5")
(source (origin
(method url-fetch)
(uri
@ -1314,7 +1314,7 @@ users to select LV2 plugins and run them with jalv.")
"/synthv1-" version ".tar.gz"))
(sha256
(base32
"1r60l286n8y4a4rrlnbc3h7xk4s2pvqykvskls89prxg0lkpz7kl"))))
"1b9w4cml3cmcg09kh852cahas6l9ks8wl3gzp1az8rzxz4229yg1"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
@ -1340,7 +1340,7 @@ oscillators and stereo effects.")
(define-public drumkv1
(package
(name "drumkv1")
(version "0.9.2")
(version "0.9.5")
(source (origin
(method url-fetch)
(uri
@ -1348,7 +1348,7 @@ oscillators and stereo effects.")
"/drumkv1-" version ".tar.gz"))
(sha256
(base32
"1z9l43z91d01b9rzam2cj9qmmg6s5y65fjvb83ms4iaa1p0mnwrn"))))
"1azzwqgrrr4zr509sib2jvigfvz5bkwnx82chdadxdwfarai8586"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
@ -1375,7 +1375,7 @@ effects.")
(define-public samplv1
(package
(name "samplv1")
(version "0.9.2")
(version "0.9.5")
(source (origin
(method url-fetch)
(uri
@ -1383,7 +1383,7 @@ effects.")
"/samplv1-" version ".tar.gz"))
(sha256
(base32
"0rfcp4v971qfhw1hb43hw12wlxmg2q13l0m1h93pyfi5l4mfjkds"))))
"0402rdr46za21w34m7ajzbwiiqcd1h0da3b0ldsr2z5g2mrkzxv8"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
@ -1410,7 +1410,7 @@ effects.")
(define-public padthv1
(package
(name "padthv1")
(version "0.9.2")
(version "0.9.5")
(source (origin
(method url-fetch)
(uri
@ -1418,7 +1418,7 @@ effects.")
"/padthv1-" version ".tar.gz"))
(sha256
(base32
"1alfl0l5qdll0w5lwhrwzj5dina1big1zmjg5imi9h06dzhz51xl"))))
"0cd1jfb3ynfrsbz8jwfsbvs5liyddxg4zghrvz931qkkqi117hbh"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; there are no tests
@ -2047,7 +2047,7 @@ capabilities, custom envelopes, effects, etc.")
(define-public yoshimi
(package
(name "yoshimi")
(version "1.5.10")
(version "1.5.10.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/yoshimi/"
@ -2055,7 +2055,7 @@ capabilities, custom envelopes, effects, etc.")
"/yoshimi-" version ".tar.bz2"))
(sha256
(base32
"0mazzn5pc4xnjci3yy1yfsx9l05gkxqzkmscaq1h75jpa7qfsial"))))
"1rr99qkq80s8l2iv3x4ccxan07m15dvmd5s9b10386bfjbwbya01"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; there are no tests
@ -3277,6 +3277,36 @@ slow gear audio effect to produce volume swells."))))
(description "This package provides the LV2 plugin \"GxSwitchlessWah\",
a simulation of an analog Wah pedal with switchless activation."))))
(define-public rkrlv2
(let ((commit "d8c17d3c976107e5c012970276d7cf0aa059f15b")
(revision "1"))
(package
(name "rkrlv2")
(version (git-version "0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/ssj71/rkrlv2.git")
(commit commit)))
(sha256
(base32
"035z068rlafb7ibgqf34ck2lm4fab8yzlx41qh061x2xi4hxkvp0"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments '(#:tests? #f)) ; there are no tests
(inputs
`(("fftw" ,fftw)
("libsamplerate" ,libsamplerate)
("lv2" ,lv2)))
(native-inputs
`(("pkg-config" ,pkg-config)))
(home-page "https://github.com/ssj71/rkrlv2")
(synopsis "Rakarrack effects ported to LV2 plugins")
(description "This package provides the Rakarrack effects as LV2
plugins. The ports are done such that hopefully when Rakarrack gets an active
maintainer these will get merged into the original project.")
(license license:gpl2))))
(define-public mod-utilities
(let ((commit "80ea3ea9f52fab7f191671f4810bf90fc955a046")
(revision "2"))

8
gnu/packages/package-management.scm
View File

@ -548,13 +548,13 @@ transactions from C or Python.")
(define-public diffoscope
(package
(name "diffoscope")
(version "112")
(version "113")
(source (origin
(method url-fetch)
(uri (pypi-uri name version))
(sha256
(base32
"00ry8iczfv85qyfxmarxpgdq2h5jfj41z8sl9005brk937a7p2fk"))))
"10wjri6vsqxf2nb7jjhsq38qlpf407b4qrdczrk696aa1v71i44w"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
@ -1034,6 +1034,10 @@ the bootloader configuration.")
("gobject-introspection" ,gobject-introspection)
("libcap" ,libcap)
("pkg-config" ,pkg-config)))
(propagated-inputs `(("glib-networking" ,glib-networking)
("gnupg" ,gnupg)
("gsettings-desktop-schemas"
,gsettings-desktop-schemas)))
(inputs `(("appstream-glib" ,appstream-glib)
("bubblewrap" ,bubblewrap)
("dconf" ,dconf)

15
gnu/packages/patches/blast+-fix-makefile.patch
View File

@ -1,15 +0,0 @@
Without this patch, the 'make install' attempts to 'install' a directory, which causes an error.
diff --git a/c++/src/build-system/Makefile.in.top b/c++/src/build-system/Makefile.in.top
index 1abe44f..d6000b3 100644
--- a/c++/src/build-system/Makefile.in.top
+++ b/c++/src/build-system/Makefile.in.top
@@ -51,7 +51,7 @@ install-toolkit:
done
cd $(includedir0) && find * -name CVS -prune -o -print |\
cpio -pd $(pincludedir)
- $(INSTALL) -m 644 $(incdir)/* $(pincludedir)
+ cp -R $(incdir)/* $(pincludedir)
## set up appropriate build and status directories somewhere under $(libdir)?
install-gbench:

11
gnu/packages/php.scm
View File

@ -58,7 +58,7 @@
(define-public php
(package
(name "php")
(version "7.3.1")
(version "7.3.3")
(home-page "https://secure.php.net/")
(source (origin
(method url-fetch)
@ -66,7 +66,7 @@
name "-" version ".tar.xz"))
(sha256
(base32
"0qikydmjg8k68l56azq4vg3gkynqwlpzayd5qi9wsl03pr03xsfg"))
"1cxrpaz5cvx1qq9klwgvcyvcly865sxpn4bdk82wpl43l5wkxc3b"))
(modules '((guix build utils)))
(snippet
'(with-directory-excursion "ext"
@ -234,6 +234,13 @@
"ext/gd/tests/xpm2gd.phpt"
"ext/gd/tests/xpm2jpg.phpt"
"ext/gd/tests/xpm2png.phpt"
;; Whitespace difference, probably caused by a very
;; long store path
"ext/gd/tests/bug77479.phpt"
;; Slightly different result (NULL instead of false),
;; but the bug report suggests the issue was in
;; the bundled gd, not upstream.
"ext/gd/tests/bug77272.phpt"
;; XXX: These iconv tests have the expected outcome,
;; but with different error messages.

11
gnu/packages/python-xyz.scm
View File

@ -1355,7 +1355,7 @@ existing ones.")
(define-public scons
(package
(name "scons")
(version "3.0.3")
(version "3.0.4")
(source (origin
(method git-fetch)
(uri (git-reference
@ -1364,7 +1364,7 @@ existing ones.")
(file-name (git-file-name name version))
(sha256
(base32
"1xizkjgrvydkjhpv7i5rx0mdkp3618sis7jsckjh57nxcynlk5dc"))))
"1xy8jrwz87y589ihcld4hv7wn122sjbz914xn8h50ww77wbhk8hn"))))
(build-system python-build-system)
(arguments
`(#:use-setuptools? #f ; still relies on distutils
@ -1376,6 +1376,9 @@ existing ones.")
(substitute* "src/engine/SCons/compat/__init__.py"
(("sys.modules\\[new\\] = imp.load_module\\(old, \\*imp.find_module\\(old\\)\\)")
"sys.modules[new] = __import__(old)"))
(substitute* "src/engine/SCons/Platform/__init__.py"
(("mod = imp.load_module\\(full_name, file, path, desc\\)")
"mod = __import__(full_name)"))
(invoke "python" "bootstrap.py" "build/scons" "DEVELOPER=guix")
(chdir "build/scons")
#t)))))
@ -14712,14 +14715,14 @@ append on old values. Partd excels at shuffling operations.")
(define-public python-dask
(package
(name "python-dask")
(version "1.1.3")
(version "1.1.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "dask" version))
(sha256
(base32
"03ykmq46q2hh7mn68vcxkgylybjaj3r0kfspaiymdmqmjzpjivr5"))))
"1hrnfz4pzawikz9b622vjz2500n7hs25nz9msy1k8l4g7l2kr6ky"))))
(build-system python-build-system)
;; A single test out of 5000+ fails. This test is marked as xfail when
;; pytest-xdist is used.

61
gnu/packages/ruby.scm
View File

@ -34,6 +34,7 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages)
#:use-module (gnu packages base)
#:use-module (gnu packages bison)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages crypto)
@ -160,6 +161,66 @@ a focus on simplicity and productivity.")
(delete-file-recursively "ext/fiddle/libffi-3.2.1")
#t))))))
(define-public mruby
(package
(name "mruby")
(version "2.0.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mruby/mruby.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"1r6w1asjshff43ymdwa6xmrkggza99mi2kw88k7ic6ag2j81hcj5"))))
(build-system gnu-build-system)
(arguments
`(#:test-target "test"
#:phases
(modify-phases %standard-phases
(delete 'configure)
(add-after 'unpack 'enable-verbose-tests
(lambda _
(substitute* "Makefile"
(("ruby ./minirake" m)
(string-append m " --verbose")))
#t))
(add-after 'unpack 'disable-broken-tests
(lambda _
(substitute* "mrbgems/mruby-io/test/io.rb"
(("assert\\('IO.popen.+$" m)
(string-append m "skip \"Hangs in the Guix build environment\"\n"))
(("assert\\('IO#isatty.+$" m)
(string-append m "skip \"Disable for Guix; there is no /dev/tty\"\n"))
;; This one is really weird. The *expected* output is all wrong.
(("assert\\('`cmd`.*" m)
(string-append m "skip \"Disable for Guix\"\n"))
(("echo foo")
(string-append (which "echo") " foo")))
#t))
;; There is no install target
(replace 'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin"))
(lib (string-append out "/lib")))
(mkdir-p bin)
(copy-recursively "build/host/bin" bin)
(mkdir-p lib)
(copy-recursively "build/host/lib" lib))
#t)))))
(native-inputs
`(("ruby" ,ruby)
("bison" ,bison)))
(home-page "https://github.com/mruby/mruby")
(synopsis "Lightweight Ruby")
(description "mruby is the lightweight implementation of the Ruby
language. Its syntax is Ruby 1.9 compatible. mruby can be linked and
embedded within your application.")
(license license:expat)))
(define-public ruby-commander
(package
(name "ruby-commander")

28
gnu/packages/scanner.scm
View File

@ -2,7 +2,7 @@
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2015 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2016 Andy Patterson <ajpatter@uwaterloo.ca>
;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
@ -26,6 +26,7 @@
#:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages image)
#:use-module (gnu packages libusb)
#:use-module ((guix licenses)
#:prefix licence:))
@ -55,7 +56,7 @@
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
`(("libusb-compat" ,libusb-compat)))
`(("libusb" ,libusb)))
(arguments
`(#:phases
(modify-phases %standard-phases
@ -63,19 +64,27 @@
(lambda _
(setenv "BACKENDS" " ")
#t))
;; Disable unmaintained tests that that fail with errors resembling:
;;
;; < # by sane-desc 3.5 from sane-backends 1.0.24git on Jul 31 2013
;; ---
;; > # by sane-desc 3.5 from sane-backends 1.0.27 on 1970-01-01#
;; FAIL: sane-desc -m usermap -s ./data
(add-before 'configure 'disable-failing-tests
(add-after 'unpack 'disable-failing-tests
(lambda _
;; Disable unmaintained tests that that fail with errors resembling:
;;
;; < # by sane-desc 3.5 from sane-backends 1.0.24git on Jul 31 2013
;; ---
;; > # by sane-desc 3.5 from sane-backends 1.0.27 on 1970-01-01#
;; FAIL: sane-desc -m usermap -s ./data
(for-each
(lambda (pattern)
(substitute* "testsuite/tools/Makefile.in"
(((string-append " " pattern " ")) " ")))
(list "usermap" "db" "udev" "udev\\+acl" "udev\\+hwdb" "hwdb"))
;; Disable tests that try to connect to actual USB hardware & fail
;; with the following error when no USB access is allowed at all:
;;
;; sanei_usb_test: sanei_usb_test.c:849: main: Assertion
;; `test_init (1)' failed.
(substitute* "testsuite/sanei/Makefile.in"
(("sanei_usb_test\\$\\(EXEEXT\\) ") ""))
#t))
(add-after 'install 'install-udev-rules
(lambda* (#:key outputs #:allow-other-keys)
@ -104,6 +113,7 @@ package contains the library, but no drivers.")
(name "sane-backends")
(inputs
`(("hplip" ,(@ (gnu packages cups) hplip-minimal))
("libpng" ,libpng) ; support ‘scanimage --format=png’
,@(package-inputs sane-backends-minimal)))
(arguments
(substitute-keyword-arguments (package-arguments sane-backends-minimal)

6
gnu/packages/search.scm
View File

@ -47,14 +47,14 @@
(define-public xapian
(package
(name "xapian")
(version "1.4.10")
(version "1.4.11")
;; Note: When updating Xapian, remember to update xapian-bindings below.
(source (origin
(method url-fetch)
(uri (string-append "https://oligarchy.co.uk/xapian/" version
"/xapian-core-" version ".tar.xz"))
(sha256
(base32 "1f4vf1w1yvsn9mn462q6snc8wkmfpifp8wrlzs4aqi45w0kr6rk8"))))
(base32 "01xwqljnp5afjf9097lyfbqc6x5bcqszfdkn9l1j86imwbrv45lz"))))
(build-system gnu-build-system)
(inputs `(("zlib" ,zlib)
("util-linux" ,util-linux)))
@ -92,7 +92,7 @@ rich set of boolean query operators.")
"/xapian-bindings-" version ".tar.xz"))
(sha256
(base32
"0zqx5gcwm2mhx41fnfx30z9c31x96g5pskyrmx3c556mnklfpask"))))
"13bi2vr5d39ys49nlwmsv64ik5pdwkz28bh08hyylrhanb45d8wx"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags '("--with-python3")

125
gnu/packages/statistics.scm
View File

@ -593,14 +593,14 @@ nonlinear mixed-effects models.")
(define-public r-mgcv
(package
(name "r-mgcv")
(version "1.8-26")
(version "1.8-27")
(source
(origin
(method url-fetch)
(uri (cran-uri "mgcv" version))
(sha256
(base32
"02bsz455fr5hyhpmgcrd266qafs2wbz3ygdipxg9gfazbdvq2v4q"))))
"06vx1z52gcdmji0phmphfa0sg62gwxkw590prplxgv4da7xrk2y8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)
@ -1021,14 +1021,14 @@ solution for sending email, including attachments, from within R.")
(define-public r-stringi
(package
(name "r-stringi")
(version "1.2.4")
(version "1.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringi" version))
(sha256
(base32
"1y46xab7g1lsjmilp4hbl7pjad6pcxp66hdj8wnfdg9518h0lmq1"))))
"0qn3xy6vnz11vv2prbm55vkbgxr6dl8w5vk5q8d7wlp9nqxndprj"))))
(build-system r-build-system)
(inputs `(("icu4c" ,icu4c)))
(native-inputs `(("pkg-config" ,pkg-config)))
@ -1047,13 +1047,13 @@ transliteration, concatenation, date-time formatting and parsing, etc.")
(define-public r-stringr
(package
(name "r-stringr")
(version "1.3.1")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringr" version))
(sha256
(base32 "0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs"))))
(base32 "1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47"))))
(build-system r-build-system)
(propagated-inputs
`(("r-glue" ,r-glue)
@ -1310,13 +1310,13 @@ for template use among CRAN packages.")
(define-public r-evaluate
(package
(name "r-evaluate")
(version "0.12")
(version "0.13")
(source (origin
(method url-fetch)
(uri (cran-uri "evaluate" version))
(sha256
(base32
"11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g"))))
"0igvc27rsqxcswjb9slnpi5d509rffxn1y5d82hgqvv970nl3p2q"))))
(build-system r-build-system)
(home-page "https://github.com/hadley/evaluate")
(synopsis "Parsing and evaluation tools for R")
@ -1330,13 +1330,13 @@ adapted for other output formats, such as HTML or LaTeX.")
(define-public r-formatr
(package
(name "r-formatr")
(version "1.5")
(version "1.6")
(source (origin
(method url-fetch)
(uri (cran-uri "formatR" version))
(sha256
(base32
"19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"))))
"0a9229rg3s9qga5v2fwfdqr0z3bk2yycv8kijrcm3jh66l68zjgm"))))
(build-system r-build-system)
(home-page "http://yihui.name/formatR")
(synopsis "Format R code automatically")
@ -1613,13 +1613,13 @@ flexible and easy to set up.")
(define-public r-r6
(package
(name "r-r6")
(version "2.3.0")
(version "2.4.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R6" version))
(sha256
(base32
"1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85"))))
"1kmbw2k5vvzwh3wwmn66mszpfny0z6k8dca980qgbxgvfh0i3gkh"))))
(build-system r-build-system)
(home-page "https://github.com/wch/R6/")
(synopsis "Classes with reference semantics in R")
@ -1679,28 +1679,26 @@ and printing capabilities than traditional data frames.")
(define-public r-dplyr
(package
(name "r-dplyr")
(version "0.7.8")
(version "0.8.0.1")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
"06p59nhli8c1sarghzxq0y4pk6lyyz3xwkarp55b252dfg2rly9p"))))
"0p6dbjrgqyklc67g53v1a5xdp9x2jpcsdcs6v3djf9d366fqh244"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-r6" ,r-r6)
("r-magrittr" ,r-magrittr)
("r-rlang" ,r-rlang)
("r-plogr" ,r-plogr)
("r-bh" ,r-bh)
("r-glue" ,r-glue)
("r-magrittr" ,r-magrittr)
("r-pkgconfig" ,r-pkgconfig)
("r-bindrcpp" ,r-bindrcpp)
("r-plogr" ,r-plogr)
("r-r6" ,r-r6)
("r-rcpp" ,r-rcpp)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
("r-tidyselect" ,r-tidyselect)))
(native-inputs
`(("r-rcpp" ,r-rcpp)
("r-bh" ,r-bh)))
(home-page "https://github.com/hadley/dplyr")
(synopsis "Tools for working with data frames in R")
(description
@ -2318,14 +2316,14 @@ collation, and NAMESPACE files.")
(define-public r-openssl
(package
(name "r-openssl")
(version "1.2.1")
(version "1.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
"0ypa41qr58jgipzkqn3wjqdsjyi7qk57i46s5wy88xy3j8jl9jkv"))))
"0jfkna9zzhy2m5qd8501ija5jnpxzjn8wi3wjw0kr2fm4sl7qynz"))))
(build-system r-build-system)
(inputs
`(("libressl" ,libressl)))
@ -2630,13 +2628,13 @@ vectors.")
(define-public r-catools
(package
(name "r-catools")
(version "1.17.1.1")
(version "1.17.1.2")
(source (origin
(method url-fetch)
(uri (cran-uri "caTools" version))
(sha256
(base32
"01hccp05gz25vhz9nnxv1c91lrxlr7drcw9xf124gggifxf2qgnm"))))
"0svj31y7h8vimvliygmmbl7pk850qk80k1vn38mlcxsnmcpm9k39"))))
(properties `((upstream-name . "caTools")))
(build-system r-build-system)
(propagated-inputs
@ -2862,13 +2860,13 @@ ldap, and also supports cookies, redirects, authentication, etc.")
(define-public r-xml
(package
(name "r-xml")
(version "3.98-1.16")
(version "3.98-1.19")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
"0nl1kk354r8snhj6p9mc74m7awvqc6akmd4y3a46y78yv3g15njp"))))
"1axyfa56q45x7z4zd56aasdn9hz9niv2vv5qm1zp9i94vyic9cc1"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
@ -3197,14 +3195,14 @@ flexible than the orphaned \"base64\" package.")
(define-public r-irlba
(package
(name "r-irlba")
(version "2.3.2")
(version "2.3.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "irlba" version))
(sha256
(base32
"0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"))))
"1h7mzrqdjc41814cf6c93sbyl7nxwvsf3x8apl9rhmydgdlk7qkf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
@ -3276,14 +3274,14 @@ options and registries, vignette, unit test and bibtex related utilities.")
(define-public r-registry
(package
(name "r-registry")
(version "0.5")
(version "0.5-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "registry" version))
(sha256
(base32
"1yqfl1g6vsl28zn8brzc39659k8lqsmfms7900j7p64ilydyb2sx"))))
"1k3j6dx350awamr0dwwgkhfs46vsnj4nf08iw5byq0x7n3nkdsnz"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/registry")
(synopsis "Infrastructure for R package registries")
@ -3523,13 +3521,13 @@ maintenance for package developers.")
(define-public r-r-utils
(package
(name "r-r-utils")
(version "2.7.0")
(version "2.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.utils" version))
(sha256
(base32
"0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n"))))
"1jaarld1jgpzh18kh9g3rlzcrk51vdgn2n1d1y28szzxlz94vifg"))))
(properties `((upstream-name . "R.utils")))
(build-system r-build-system)
(propagated-inputs
@ -3571,13 +3569,13 @@ persistent (on the file system).")
(define-public r-r-rsp
(package
(name "r-r-rsp")
(version "0.43.0")
(version "0.43.1")
(source (origin
(method url-fetch)
(uri (cran-uri "R.rsp" version))
(sha256
(base32
"0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd"))))
"0i01p8jxc4j4zl2v2ykvvpfnm5hv650zj1wi1dh8hq0c98xi2yfr"))))
(properties `((upstream-name . "R.rsp")))
(build-system r-build-system)
(propagated-inputs
@ -3603,13 +3601,13 @@ vignettes.")
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
(version "1.0-8")
(version "1.0-10")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
"0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410"))))
"04md0wmqgif24g0a4hx19ifn4kk8nx10986vf2d9vascig6ikpri"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
@ -3724,14 +3722,14 @@ selection.")
(define-public r-tidyr
(package
(name "r-tidyr")
(version "0.8.2")
(version "0.8.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyr" version))
(sha256
(base32
"03s9dv6c2dj65a769h8fgy9878y46rdq7x65i53kd44kag80i9cr"))))
"0dyc4b03wi65bk7j0ma0y188syh37h57wgxji82i0h8j6pn593x1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
@ -3780,14 +3778,14 @@ It uses and relies on grid graphics and formal (S4) classes and methods.")
(define-public r-purrr
(package
(name "r-purrr")
(version "0.3.0")
(version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "purrr" version))
(sha256
(base32
"0mzbf9ca8qdrqkrh9x7yzqxiab9bk10ql46qr1wl2bgbflminzda"))))
"0fw8nyrwf009fpj3457binw5s02si226yrvn96hdivwj268ck8y2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
@ -4424,13 +4422,13 @@ data at that region, and avoids over-plotting.")
(define-public r-ggthemes
(package
(name "r-ggthemes")
(version "4.0.1")
(version "4.1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "ggthemes" version))
(sha256
(base32
"0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b"))))
"1a6r384v72hb91qkg9rz2m7s3qskbl9haxynf2vzz6v1ak9xd4c5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
@ -4702,14 +4700,14 @@ to change in the future.")
(define-public r-flexmix
(package
(name "r-flexmix")
(version "2.3-14")
(version "2.3-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "flexmix" version))
(sha256
(base32
"0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43"))))
"0hrz2axp2c9548b1r0bmrl57219nn030qndb83a8garkzq5lqi5s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)
@ -4981,14 +4979,14 @@ groupings.")
(define-public r-vgam
(package
(name "r-vgam")
(version "1.0-6")
(version "1.1-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "VGAM" version))
(sha256
(base32
"1fg31xz86jblqraifiy3q36d0hjqnll01jxx85xq87j1cyhj060j"))))
"0lnsqx3q3k0c7sj8gj0n6shn2fyxwrh8xph8h1r1i23ybbb2n6fy"))))
(properties `((upstream-name . "VGAM")))
(build-system r-build-system)
(inputs
@ -5006,14 +5004,14 @@ VGLMs can be loosely thought of as multivariate generalised linear models.")
(define-public r-pbapply
(package
(name "r-pbapply")
(version "1.3-4")
(version "1.4-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "pbapply" version))
(sha256
(base32
"0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"))))
"0bn7a9ni36xy5acnrl9ky3gd1k8jr5kxgazzh3pzd1q6bri1nx7k"))))
(build-system r-build-system)
(home-page "https://github.com/psolymos/pbapply")
(synopsis "Adding progress bar to apply functions")
@ -5175,25 +5173,25 @@ algorithms.")
(define-public r-lme4
(package
(name "r-lme4")
(version "1.1-19")
(version "1.1-21")
(source
(origin
(method url-fetch)
(uri (cran-uri "lme4" version))
(sha256
(base32
"0j8xhkkcdv45ilab960s9jrcjk6jbzvd7w7myswv5fmalrpq52pf"))))
"035j2hqkwv939xl07pm2vykvf3wlx8qj317846n9pkpqkyv58mbz"))))
(build-system r-build-system)
(native-inputs
`(("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)))
(propagated-inputs
`(("r-lattice" ,r-lattice)
`(("r-boot" ,r-boot)
("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-minqa" ,r-minqa)
("r-nloptr" ,r-nloptr)
("r-mass" ,r-mass)
("r-nlme" ,r-nlme)))
("r-nlme" ,r-nlme)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)))
(home-page "https://cran.r-project.org/web/packages/lme4")
(synopsis "Linear mixed-effects models using eigen and S4")
(description
@ -5428,14 +5426,14 @@ diagnostic tools (@code{ctlcurves} and @code{DiscrFact}).")
(define-public r-ranger
(package
(name "r-ranger")
(version "0.11.1")
(version "0.11.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
(base32
"1yyg1nppq76jngzffd44brppqrlxqdhv92pyy0gn09rfc0ab37wr"))))
"1sxyzxmjc6lm8wcmq15j6sscnza7aay4mr3dyri2zngx6fa8mb0k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
@ -5561,17 +5559,18 @@ and the corresponding decision threshold.")
(define-public r-forcats
(package
(name "r-forcats")
(version "0.3.0")
(version "0.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "forcats" version))
(sha256
(base32
"0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm"))))
"1cnjh23z59fhbjmy7y95425hcq3m5wrwqvahsxwi7zm6d9bwp0vw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
`(("r-ellipsis" ,r-ellipsis)
("r-magrittr" ,r-magrittr)
("r-tibble" ,r-tibble)
("r-rlang" ,r-rlang)))
(home-page "http://forcats.tidyverse.org")

7
gnu/packages/terminals.scm
View File

@ -410,7 +410,7 @@ has no notion of what's interesing, but it's very good at that notifying part.")
(define-public unibilium
(package
(name "unibilium")
(version "1.2.1")
(version "2.0.0")
(source
(origin
(method git-fetch)
@ -420,7 +420,7 @@ has no notion of what's interesing, but it's very good at that notifying part.")
(file-name (git-file-name name version))
(sha256
(base32
"11mbfijdrvbmdlmxs8j4vij78ki0vna89yg3r9n9g1i6j45hiq2r"))))
"1wa9a32wzqnxqh1jh554afj13dzjr6mw2wzqzw8d08nza9pg2ra2"))))
(build-system gnu-build-system)
(arguments
`(#:make-flags
@ -433,7 +433,8 @@ has no notion of what's interesing, but it's very good at that notifying part.")
(modify-phases %standard-phases
(delete 'configure))))
(native-inputs
`(("libtool" ,libtool)))
`(("libtool" ,libtool)
("perl" ,perl)))
(home-page "https://github.com/mauke/unibilium")
(synopsis "Terminfo parsing library")
(description "Unibilium is a basic C terminfo library. It doesn't depend

74
gnu/packages/tex.scm
View File

@ -6460,3 +6460,77 @@ effects, varying slide transitions and animations.")
;; Code is dual licensed under GPLv2+ or LPPL1.3c+; documentation is
;; dual-licensed under either FDLv1.3+ or LPPL1.3c+.
(license (list license:lppl1.3c+ license:gpl2+ license:fdl1.3+))))
(define-public texlive-latex-xmpincl
(package
(name "texlive-latex-xmpincl")
(version (number->string %texlive-revision))
(source
(origin
(method svn-fetch)
(uri (texlive-ref "latex" "xmpincl"))
(sha256
(base32
"0lq3dfb4fsw955gjwllnk7cg00ciq5mva64mlpbva6g2jz117734"))))
(build-system texlive-build-system)
(arguments '(#:tex-directory "latex/xmpincl"))
(home-page "http://www.ctan.org/pkg/xmpincl")
(synopsis "Include eXtensible Metadata Platform data in pdfLaTeX")
(description
"The XMP (eXtensible Metadata platform) is a framework to add metadata to
digital material to enhance the workflow in publication. The essence is that
the metadata is stored in an XML file, and this XML stream is then embedded in
the file to which it applies.")
(license license:gpl3+)))
(define-public texlive-latex-pdfx
(package
(name "texlive-latex-pdfx")
(version (number->string %texlive-revision))
(source
(origin
(method svn-fetch)
(uri (texlive-ref "latex" "pdfx"))
(sha256
(base32
"0ikxg8yzq78hy5b9x13d4nah46d0yvmwlqmdri06pygbx116dcac"))))
(build-system texlive-build-system)
(arguments
'(#:tex-directory "latex/pdfx"
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-encoding
(lambda _
(substitute* "pdfx.dtx"
((" .+umaczy") "umaczy"))
#t))
(add-before 'install 'install-tex-files
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((target (string-append (assoc-ref outputs "out")
"/share/texmf-dist/tex/latex/pdfx")))
(mkdir-p target)
(copy-recursively (assoc-ref inputs "texlive-tex-pdfx") target)
;; Install the generated version in the "install" phase.
(delete-file (string-append target "/pdfx.sty"))
#t))))))
(propagated-inputs
`(("texlive-generic-pdftex" ,texlive-generic-pdftex)))
(native-inputs
`(("texlive-tex-pdfx"
,(origin
(method svn-fetch)
(uri (svn-reference
(url (string-append "svn://www.tug.org/texlive/tags/"
%texlive-tag "/Master/texmf-dist/"
"/tex/latex/pdfx"))
(revision %texlive-revision)))
(file-name (string-append "texlive-tex-latex-pdfx-" version "-checkout"))
(sha256
(base32
"14j1zsvqc59ims3sk34v6km8db6cimks28y5fcxcr5mi2ykvj4vf"))))))
(home-page "https://www.ctan.org/pkg/pdfx")
(synopsis "PDF/X and PDF/A support for pdfTeX, LuaTeX and XeTeX")
(description
"This package helps LaTeX users to create PDF/X, PFD/A and other
standards-compliant PDF documents with pdfTeX, LuaTeX and XeTeX.")
(license license:lppl1.2+)))

25
gnu/packages/video.scm
View File

@ -5,7 +5,7 @@
;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2015 Andy Patterson <ajpatter@uwaterloo.ca>
;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018, 2019 Alex Vong <alexvong1995@gmail.com>
;;; Copyright © 2016, 2017 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
@ -1570,7 +1570,7 @@ audio, images) from the Web. It can use either mpv or vlc for playback.")
(define-public youtube-viewer
(package
(name "youtube-viewer")
(version "3.5.2")
(version "3.5.4")
(source (origin
(method git-fetch)
(uri (git-reference
@ -1579,7 +1579,7 @@ audio, images) from the Web. It can use either mpv or vlc for playback.")
(file-name (git-file-name name version))
(sha256
(base32
"0sx0f7jgc41a4anflw02zqk5yivydn02nn78kxkn3fik6xdmv3yd"))))
"1j782m9rximybamd0qsc43hi7hgk333x9gy3ypzb61s0sifs0i6m"))))
(build-system perl-build-system)
(native-inputs
`(("perl-module-build" ,perl-module-build)))
@ -2398,7 +2398,7 @@ Other features include a live preview and live streaming.")
(define-public libsmpeg
(package
(name "libsmpeg")
(version "0.4.5")
(version "0.4.5-401")
(source (origin
(method svn-fetch)
(uri (svn-reference
@ -2433,6 +2433,23 @@ and MPEG system streams.")
license:lgpl2.1+
license:gpl2))))
;; for btanks
(define-public libsmpeg-with-sdl1
(package (inherit libsmpeg)
(name "libsmpeg")
(version "0.4.5-399")
(source (origin
(method svn-fetch)
(uri (svn-reference
(url "svn://svn.icculus.org/smpeg/trunk/")
(revision 399))) ; tagged release 0.4.5
(file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"0jfi085rf3fa5xsn0vd3nqf32my8ph9c6a9445y7a8lrlz4dms64"))))
(inputs
`(("sdl" ,sdl)))))
(define-public libbdplus
(package
(name "libbdplus")

7
gnu/packages/vim.scm
View File

@ -693,6 +693,13 @@ are detected, the user is notified.")))
#:configure-flags '("-DPREFER_LUA:BOOL=YES")
#:phases
(modify-phases %standard-phases
;; TODO: remove 'patch-tic on update
;; see: https://github.com/neovim/neovim/issues/9687
(add-after 'unpack 'patch-tic
(lambda _
(substitute* "src/nvim/tui/tui.c"
(("value != NULL") "value != NULL && value != (char *)-1"))
#t))
(add-after 'unpack 'set-lua-paths
(lambda* (#:key inputs #:allow-other-keys)
(let* ((lua-version "5.2")

8
gnu/packages/vpn.scm
View File

@ -9,6 +9,7 @@
;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com>
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
;;; Copyright © 2019 Leo Famulari <leo@famulari.name>
;;; Copyright © 2019 Rutger Helling <rhelling@mykolab.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -454,19 +455,20 @@ The peer-to-peer VPN implements a Layer 2 (Ethernet) network between the peers
(define-public wireguard
(package
(name "wireguard")
(version "0.0.20190123")
(version "0.0.20190227")
(source (origin
(method url-fetch)
(uri (string-append "https://git.zx2c4.com/WireGuard/snapshot/"
"WireGuard-" version ".tar.xz"))
(sha256
(base32
"16yzzy4i0z2zslmyr3kppkvkrxryzwdil6v270w9w5mg65v3rlgd"))))
"0ybzycpjjidyiz88kkh67abvp3y30f34252dwpgf3ncj4vyjdnzw"))))
(build-system gnu-build-system)
(outputs '("out" ; The WireGuard userspace tools
"kernel-patch")) ; A patch to build Linux with WireGuard support
(arguments
`(#:make-flags
`(#:tests? #f ; No tests available.
#:make-flags
(list "CC=gcc"
"WITH_BASHCOMPLETION=yes"
;; Build and install the helper script wg-quick(8).

33
gnu/packages/wm.scm
View File

@ -389,19 +389,19 @@ prompt.")
(define-public i3lock-color
(package
(name "i3lock-color")
(version "2.11-c")
(version "2.12.c")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/PandorasFox/i3lock-color/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(method git-fetch)
(uri (git-reference
(url "https://github.com/PandorasFox/i3lock-color.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0zh7il2y6dmzym3w6r9xii5dma8pjjjlq4dm5iby7m3gvplj4q9p"))))
(base32 "08fhnchf187b73h52xgzb86g6byzxz085zs9galsvl687g5zxk34"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f)) ;no tests included
`(#:tests? #f)) ; no tests included
(inputs
`(("cairo" ,cairo)
("libev" ,libev)
@ -410,7 +410,8 @@ prompt.")
("libxkbcommon" ,libxkbcommon)
("linux-pam" ,linux-pam)
("xcb-util" ,xcb-util)
("xcb-util-image" ,xcb-util-image)))
("xcb-util-image" ,xcb-util-image)
("xcb-util-xrm" ,xcb-util-xrm)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
@ -434,16 +435,16 @@ Features include:
(version "0.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/meskarune/i3lock-fancy/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(method git-fetch)
(uri (git-reference
(url "https://github.com/meskarune/i3lock-fancy.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"020m7mnfq5cvir7p9v3hkb7cvb4cai33wppxl2zdwscwwjnchc5y"))))
(base32 "11g2kkim33ra38d1m897sq1ifajw17iyw9mr7sg1q8i2ibl4lfsi"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;No tests included
`(#:tests? #f ; no tests included
#:phases
(modify-phases %standard-phases
(replace 'configure

57
gnu/packages/xdisorg.scm
View File

@ -23,7 +23,7 @@
;;; Copyright © 2017 Mike Gerwitz <mtg@gnu.org>
;;; Copyright © 2018 Thomas Sigurdsen <tonton@riseup.net>
;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2018, 2019 Pierre Neidhardt <mail@ambrevar.xyz>
;;; Copyright © 2018 Nam Nguyen <namn@berkeley.edu>
;;;
;;; This file is part of GNU Guix.
@ -69,6 +69,7 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages gnome)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages man)
#:use-module (gnu packages maths)
#:use-module (gnu packages m4)
#:use-module (gnu packages ncurses)
@ -132,6 +133,60 @@ are saved as executable shell scripts which can be loaded without using this
program.")
(license license:gpl3+)))
(define-public autorandr
;; Use latest commit since 1.7 lacks many new features such as the
;; autorandr_launcher.
(let ((commit "b484c0ea9c9a4838278bbd661a7cc384333c1df8"))
(package
(name "autorandr")
(version (git-version "1.7" "1" commit))
(home-page "https://github.com/phillipberndt/autorandr")
(source
(origin
(method git-fetch)
(uri (git-reference
(url home-page)
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0da17kzsisjv3s993j5idkk1n2d2cvjdn7pngs2b0ic1r2h5z02h"))))
(build-system python-build-system)
(native-inputs
`(("man-db" ,man-db)))
(inputs
`(("xrandr" ,xrandr)
("libxcb" ,libxcb)))
(arguments
`(#:phases
(modify-phases %standard-phases
(add-before 'build 'configure
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "autorandr.py"
(("popen\\(\"xrandr") (string-append "popen(\""
(assoc-ref inputs "xrandr")
"/bin/xrandr"))
(("\\[\"xrandr") (string-append "[\""
(assoc-ref inputs "xrandr")
"/bin/xrandr")))
#t))
(add-after 'install 'install-contrib
(lambda* (#:key outputs #:allow-other-keys)
(invoke "make"
(string-append "DESTDIR=" (assoc-ref outputs "out"))
"PREFIX="
"BASH_COMPLETIONS_DIR=etc/bash_completiond.d"
"install_manpage"
"install_bash_completion"
"install_launcher"))))))
(synopsis "Auto-detect connected displays and load appropiate setup")
(description "Autorandr wraps around xrandr to help with X11
multi-screen configuration management. It allows the user to create profiles
for various multi-screen setups. Autorandr automatically detects the profiles
that can be activated based on the connected hardware. Hook scripts can be
used to further tweak the behaviour of the different profiles.")
(license license:gpl3+))))
(define-public xclip
(package
(name "xclip")

8
gnu/packages/xorg.scm
View File

@ -4025,7 +4025,7 @@ Font Description (XLFD) full name for a font.")
(define-public xfd
(package
(name "xfd")
(version "1.1.2")
(version "1.1.3")
(source (origin
(method url-fetch)
(uri (string-append
@ -4033,7 +4033,7 @@ Font Description (XLFD) full name for a font.")
version ".tar.bz2"))
(sha256
(base32
"0n97iqqap9wyxjan2n520vh4rrf5bc0apsw2k9py94dqzci258y1"))))
"0n6r1v8sm0z0ycqch035xpm46nv5v4mav3kxh36883l3ln5r6bqr"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@ -4153,7 +4153,7 @@ it for output on various types of printers.")
(define-public xprop
(package
(name "xprop")
(version "1.2.3")
(version "1.2.4")
(source
(origin
(method url-fetch)
@ -4163,7 +4163,7 @@ it for output on various types of printers.")
".tar.bz2"))
(sha256
(base32
"06sjgahjiz85v0k0pmv5x05chc591xynl5ah1bqzz1bdr0lgnanj"))))
"0lzp7kyhpwd5hm83j2zm6j3w3z1z5i4ykgg2nwr01ij6dq4znxwc"))))
(build-system gnu-build-system)
(inputs
`(("xorgproto" ,xorgproto)

8
gnu/services/dbus.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;;
;;; This file is part of GNU Guix.
@ -150,7 +150,11 @@ includes the @code{etc/dbus-1/system.d} directories of each package listed in
(let ((user (getpwnam "messagebus")))
(chown "/var/run/dbus"
(passwd:uid user) (passwd:gid user)))
(passwd:uid user) (passwd:gid user))
;; This directory contains the daemon's socket so it must be
;; world-readable.
(chmod "/var/run/dbus" #o755))
(unless (file-exists? "/etc/machine-id")
(format #t "creating /etc/machine-id...~%")

109
gnu/system/accounts.scm Normal file
View File

@ -0,0 +1,109 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu system accounts)
#:use-module (guix records)
#:use-module (ice-9 match)
#:export (user-account
user-account?
user-account-name
user-account-password
user-account-uid
user-account-group
user-account-supplementary-groups
user-account-comment
user-account-home-directory
user-account-create-home-directory?
user-account-shell
user-account-system?
user-group
user-group?
user-group-name
user-group-password
user-group-id
user-group-system?
sexp->user-account
sexp->user-group
default-shell))
;;; Commentary:
;;;
;;; Data structures representing user accounts and user groups. This is meant
;;; to be used both on the host side and at run time--e.g., in activation
;;; snippets.
;;;
;;; Code:
(define default-shell
;; Default shell for user accounts (a string or string-valued gexp).
(make-parameter "/bin/sh"))
(define-record-type* <user-account>
user-account make-user-account
user-account?
(name user-account-name)
(password user-account-password (default #f))
(uid user-account-uid (default #f))
(group user-account-group) ; number | string
(supplementary-groups user-account-supplementary-groups
(default '())) ; list of strings
(comment user-account-comment (default ""))
(home-directory user-account-home-directory)
(create-home-directory? user-account-create-home-directory? ;Boolean
(default #t))
(shell user-account-shell ; gexp
(default (default-shell)))
(system? user-account-system? ; Boolean
(default #f)))
(define-record-type* <user-group>
user-group make-user-group
user-group?
(name user-group-name)
(password user-group-password (default #f))
(id user-group-id (default #f))
(system? user-group-system? ; Boolean
(default #f)))
(define (sexp->user-group sexp)
"Take SEXP, a tuple as returned by 'user-group->gexp', and turn it into a
user-group record."
(match sexp
((name password id system?)
(user-group (name name)
(password password)
(id id)
(system? system?)))))
(define (sexp->user-account sexp)
"Take SEXP, a tuple as returned by 'user-account->gexp', and turn it into a
user-account record."
(match sexp
((name uid group supplementary-groups comment home-directory
create-home-directory? shell password system?)
(user-account (name name) (uid uid) (group group)
(supplementary-groups supplementary-groups)
(comment comment)
(home-directory home-directory)
(create-home-directory? create-home-directory?)
(shell shell) (password password)
(system? system?)))))

92
gnu/system/shadow.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
;;;
;;; This file is part of GNU Guix.
@ -24,6 +24,7 @@
#:use-module (guix modules)
#:use-module (guix sets)
#:use-module (guix ui)
#:use-module (gnu system accounts)
#:use-module (gnu services)
#:use-module (gnu services shepherd)
#:use-module ((gnu system file-systems)
@ -36,27 +37,29 @@
#:use-module (srfi srfi-26)
#:use-module (srfi srfi-34)
#:use-module (srfi srfi-35)
#:export (user-account
user-account?
user-account-name
user-account-password
user-account-uid
user-account-group
user-account-supplementary-groups
user-account-comment
user-account-home-directory
user-account-create-home-directory?
user-account-shell
user-account-system?
user-group
user-group?
user-group-name
user-group-password
user-group-id
user-group-system?
;; Re-export these bindings for backward compatibility.
#:re-export (user-account
user-account?
user-account-name
user-account-password
user-account-uid
user-account-group
user-account-supplementary-groups
user-account-comment
user-account-home-directory
user-account-create-home-directory?
user-account-shell
user-account-system?
default-skeletons
user-group
user-group?
user-group-name
user-group-password
user-group-id
user-group-system?)
#:export (default-skeletons
skeleton-directory
%base-groups
%base-user-accounts
@ -70,33 +73,8 @@
;;;
;;; Code:
(define-record-type* <user-account>
user-account make-user-account
user-account?
(name user-account-name)
(password user-account-password (default #f))
(uid user-account-uid (default #f))
(group user-account-group) ; number | string
(supplementary-groups user-account-supplementary-groups
(default '())) ; list of strings
(comment user-account-comment (default ""))
(home-directory user-account-home-directory)
(create-home-directory? user-account-create-home-directory? ;Boolean
(default #t))
(shell user-account-shell ; gexp
(default (file-append bash "/bin/bash")))
(system? user-account-system? ; Boolean
(default #f)))
(define-record-type* <user-group>
user-group make-user-group
user-group?
(name user-group-name)
(password user-group-password (default #f))
(id user-group-id (default #f))
(system? user-group-system? ; Boolean
(default #f)))
;; Change the default shell used by new <user-account> records.
(default-shell (file-append bash "/bin/bash"))
(define %base-groups
;; Default set of groups.
@ -320,11 +298,12 @@ group."
(assert-valid-users/groups accounts groups)
;; Add users and user groups.
#~(begin
(setenv "PATH"
(string-append #$(@ (gnu packages admin) shadow) "/sbin"))
(activate-users+groups (list #$@user-specs)
(list #$@group-specs))))
(with-imported-modules (source-module-closure '((gnu system accounts)))
#~(begin
(use-modules (gnu system accounts))
(activate-users+groups (map sexp->user-account (list #$@user-specs))
(map sexp->user-group (list #$@group-specs))))))
(define (account-shepherd-service accounts+groups)
"Return a Shepherd service that creates the home directories for the user
@ -344,12 +323,15 @@ accounts among ACCOUNTS+GROUPS."
(list (shepherd-service
(requirement '(file-systems))
(provision '(user-homes))
(modules '((gnu build activation)))
(modules '((gnu build activation)
(gnu system accounts)))
(start (with-imported-modules (source-module-closure
'((gnu build activation)))
'((gnu build activation)
(gnu system accounts)))
#~(lambda ()
(activate-user-home
(list #$@(map user-account->gexp accounts)))
(map sexp->user-account
(list #$@(map user-account->gexp accounts))))
#f))) ;stop
(stop #~(const #f))
(respawn? #f)

6
gnu/tests/base.scm
View File

@ -258,6 +258,12 @@ info --version")
(operating-system-user-accounts os))))
(stat:perms (marionette-eval `(stat ,root-home) marionette))))
(test-equal "ownership and permissions of /var/empty"
'(0 0 #o555)
(let ((st (marionette-eval `(stat "/var/empty") marionette)))
(list (stat:uid st) (stat:gid st)
(stat:perms st))))
(test-equal "no extra home directories"
'()

6
guix/channels.scm
View File

@ -477,6 +477,12 @@ be used as a profile hook."
(gexp->derivation-in-inferior "guix-package-cache" build
profile
;; If the Guix in PROFILE is too old and
;; lacks 'guix repl', don't build the cache
;; instead of failing.
#:silent-failure? #t
#:properties '((type . profile-hook)
(hook . package-cache))
#:local-build? #t)))

43
guix/describe.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -19,11 +19,16 @@
(define-module (guix describe)
#:use-module (guix memoization)
#:use-module (guix profiles)
#:use-module (guix packages)
#:use-module ((guix utils) #:select (location-file))
#:use-module ((guix store) #:select (%store-prefix))
#:use-module (srfi srfi-1)
#:use-module (ice-9 match)
#:export (current-profile
current-profile-entries
package-path-entries))
package-path-entries
package-provenance))
;;; Commentary:
;;;
@ -73,3 +78,37 @@ process lives in, when applicable."
"/share/guile/site/"
(effective-version))))
(current-profile-entries))))
(define (package-provenance package)
"Return the provenance of PACKAGE as an sexp for use as the 'provenance'
property of manifest entries, or #f if it could not be determined."
(define (entry-source entry)
(match (assq 'source
(manifest-entry-properties entry))
(('source value) value)
(_ #f)))
(match (and=> (package-location package) location-file)
(#f #f)
(file
(let ((file (if (string-prefix? "/" file)
file
(search-path %load-path file))))
(and file
(string-prefix? (%store-prefix) file)
;; Always store information about the 'guix' channel and
;; optionally about the specific channel FILE comes from.
(or (let ((main (and=> (find (lambda (entry)
(string=? "guix"
(manifest-entry-name entry)))
(current-profile-entries))
entry-source))
(extra (any (lambda (entry)
(let ((item (manifest-entry-item entry)))
(and (string-prefix? item file)
(entry-source entry))))
(current-profile-entries))))
(and main
`(,main
,@(if extra (list extra) '()))))))))))

25
guix/inferior.scm
View File

@ -513,10 +513,15 @@ PACKAGE must be live."
(inferior-package->derivation package system #:target target))
(define* (gexp->derivation-in-inferior name exp guix
#:key silent-failure?
#:allow-other-keys
#:rest rest)
"Return a derivation that evaluates EXP with GUIX, an instance of Guix as
returned for example by 'channel-instances->derivation'. Other arguments are
passed as-is to 'gexp->derivation'."
passed as-is to 'gexp->derivation'.
When SILENT-FAILURE? is true, create an empty output directory instead of
failing when GUIX is too old and lacks the 'guix repl' command."
(define script
;; EXP wrapped with a proper (set! %load-path …) prologue.
(scheme-file "inferior-script.scm" exp))
@ -539,9 +544,23 @@ passed as-is to 'gexp->derivation'."
(write `(primitive-load #$script) pipe)
(unless (zero? (close-pipe pipe))
(error "inferior failed" #+guix)))))
(if #$silent-failure?
(mkdir #$output)
(error "inferior failed" #+guix))))))
(apply gexp->derivation name trampoline rest))
(define (drop-extra-keyword lst)
(let loop ((lst lst)
(result '()))
(match lst
(()
(reverse result))
((#:silent-failure? _ . rest)
(loop rest result))
((kw value . tail)
(loop tail (cons* value kw result))))))
(apply gexp->derivation name trampoline
(drop-extra-keyword rest)))
;;;

6
guix/licenses.scm
View File

@ -50,6 +50,7 @@
cpl1.0
edl1.0
epl1.0
epl2.0
expat
freetype
freebsd-doc
@ -274,6 +275,11 @@ at URI, which may be a file:// URI pointing the package's tree."
"http://directory.fsf.org/wiki/License:EPLv1.0"
"https://www.gnu.org/licenses/license-list#EPL"))
(define epl2.0
(license "EPL 2.0"
"https://www.eclipse.org/legal/epl-2.0/"
"https://www.gnu.org/licenses/license-list#EPL2"))
(define expat
(license "Expat"
"http://directory.fsf.org/wiki/License:Expat"

27
guix/scripts/pack.scm
View File

@ -32,6 +32,7 @@
#:use-module (guix modules)
#:use-module (guix packages)
#:use-module (guix profiles)
#:use-module (guix describe)
#:use-module (guix derivations)
#:use-module (guix search-paths)
#:use-module (guix build-system gnu)
@ -678,6 +679,9 @@ please email '~a'~%")
(x
(leave (G_ "~a: invalid symlink specification~%")
arg)))))
(option '("save-provenance") #f #f
(lambda (opt name arg result)
(alist-cons 'save-provenance? #t result)))
(option '("localstatedir") #f #f
(lambda (opt name arg result)
(alist-cons 'localstatedir? #t result)))
@ -725,6 +729,8 @@ Create a bundle of PACKAGE.\n"))
-S, --symlink=SPEC create symlinks to the profile according to SPEC"))
(display (G_ "
-m, --manifest=FILE create a pack with the manifest from FILE"))
(display (G_ "
--save-provenance save provenance information"))
(display (G_ "
--localstatedir include /var/guix in the resulting pack"))
(display (G_ "
@ -772,13 +778,32 @@ Create a bundle of PACKAGE.\n"))
(list (transform store package) "out")))
(filter-map maybe-package-argument opts)))
(manifest-file (assoc-ref opts 'manifest)))
(define properties
(if (assoc-ref opts 'save-provenance?)
(lambda (package)
(match (package-provenance package)
(#f
(warning (G_ "could not determine provenance of package ~a~%")
(package-full-name package))
'())
(sexp
`((provenance . ,sexp)))))
(const '())))
(cond
((and manifest-file (not (null? packages)))
(leave (G_ "both a manifest and a package list were given~%")))
(manifest-file
(let ((user-module (make-user-module '((guix profiles) (gnu)))))
(load* manifest-file user-module)))
(else (packages->manifest packages)))))
(else
(manifest
(map (match-lambda
((package output)
(package->manifest-entry package output
#:properties
(properties package))))
packages))))))
(with-error-handling
(with-store store

36
guix/scripts/package.scm
View File

@ -36,7 +36,7 @@
#:use-module (guix config)
#:use-module (guix scripts)
#:use-module (guix scripts build)
#:autoload (guix describe) (current-profile-entries)
#:autoload (guix describe) (package-provenance)
#:use-module ((guix build utils)
#:select (directory-exists? mkdir-p))
#:use-module (ice-9 format)
@ -552,40 +552,6 @@ upgrading, #f otherwise."
(output "out") ;XXX: wild guess
(item item))))
(define (package-provenance package)
"Return the provenance of PACKAGE as an sexp for use as the 'provenance'
property of manifest entries, or #f if it could not be determined."
(define (entry-source entry)
(match (assq 'source
(manifest-entry-properties entry))
(('source value) value)
(_ #f)))
(match (and=> (package-location package) location-file)
(#f #f)
(file
(let ((file (if (string-prefix? "/" file)
file
(search-path %load-path file))))
(and file
(string-prefix? (%store-prefix) file)
;; Always store information about the 'guix' channel and
;; optionally about the specific channel FILE comes from.
(or (let ((main (and=> (find (lambda (entry)
(string=? "guix"
(manifest-entry-name entry)))
(current-profile-entries))
entry-source))
(extra (any (lambda (entry)
(let ((item (manifest-entry-item entry)))
(and (string-prefix? item file)
(entry-source entry))))
(current-profile-entries))))
(and main
`(,main
,@(if extra (list extra) '()))))))))))
(define (package->manifest-entry* package output)
"Like 'package->manifest-entry', but attach PACKAGE provenance meta-data to
the resulting manifest entry."

52
guix/store/database.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 Caleb Ristvedt <caleb.ristvedt@cune.org>
;;; Copyright © 2017, 2019 Caleb Ristvedt <caleb.ristvedt@cune.org>
;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
@ -96,6 +96,31 @@ create it and initialize it as a new database."
(lambda ()
(sqlite-close db)))))
;; XXX: missing in guile-sqlite3@0.1.0
(define SQLITE_BUSY 5)
(define (call-with-transaction db proc)
"Start a transaction with DB (make as many attempts as necessary) and run
PROC. If PROC exits abnormally, abort the transaction, otherwise commit the
transaction after it finishes."
(catch 'sqlite-error
(lambda ()
;; We use begin immediate here so that if we need to retry, we
;; figure that out immediately rather than because some SQLITE_BUSY
;; exception gets thrown partway through PROC - in which case the
;; part already executed (which may contain side-effects!) would be
;; executed again for every retry.
(sqlite-exec db "begin immediate;")
(let ((result (proc)))
(sqlite-exec db "commit;")
result))
(lambda (key who error description)
(if (= error SQLITE_BUSY)
(call-with-transaction db proc)
(begin
(sqlite-exec db "rollback;")
(throw 'sqlite-error who error description))))))
(define %default-database-file
;; Default location of the store database.
(string-append %store-database-directory "/db.sqlite"))
@ -172,9 +197,9 @@ ids of items referred to."
(sqlite-bind-arguments stmt #:referrer referrer
#:reference reference)
(sqlite-fold cons '() stmt) ;execute it
(sqlite-finalize stmt)
(last-insert-row-id db))
references)))
references)
(sqlite-finalize stmt)))
(define* (sqlite-register db #:key path (references '())
deriver hash nar-size time)
@ -305,6 +330,7 @@ Write a progress report to LOG-PORT."
(define real-file-name
(string-append store-dir "/" (basename (store-info-item item))))
;; When TO-REGISTER is already registered, skip it. This makes a
;; significant differences when 'register-closures' is called
;; consecutively for overlapping closures such as 'system' and 'bootcfg'.
@ -325,12 +351,14 @@ Write a progress report to LOG-PORT."
(mkdir-p db-dir)
(parameterize ((sql-schema schema))
(with-database (string-append db-dir "/db.sqlite") db
(let* ((prefix (format #f "registering ~a items" (length items)))
(progress (progress-reporter/bar (length items)
prefix log-port)))
(call-with-progress-reporter progress
(lambda (report)
(for-each (lambda (item)
(register db item)
(report))
items)))))))
(call-with-transaction db
(lambda ()
(let* ((prefix (format #f "registering ~a items" (length items)))
(progress (progress-reporter/bar (length items)
prefix log-port)))
(call-with-progress-reporter progress
(lambda (report)
(for-each (lambda (item)
(register db item)
(report))
items)))))))))

53
guix/upstream.scm
View File

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Alex Kost <alezost@gmail.com>
;;; Copyright © 2019 Ricardo Wurmus <rekado@elephly.net>
;;;
@ -23,7 +23,7 @@
#:use-module (guix utils)
#:use-module (guix discovery)
#:use-module ((guix download)
#:select (download-to-store))
#:select (download-to-store url-fetch))
#:use-module (guix gnupg)
#:use-module (guix packages)
#:use-module (guix ui)
@ -37,6 +37,8 @@
#:use-module (srfi srfi-9)
#:use-module (srfi srfi-11)
#:use-module (srfi srfi-26)
#:use-module (srfi srfi-34)
#:use-module (srfi srfi-35)
#:use-module (ice-9 match)
#:use-module (ice-9 regex)
#:export (upstream-source
@ -340,17 +342,13 @@ values: the item from LST1 and the item from LST2 that match PRED."
(()
(values #f #f)))))
(define* (package-update store package updaters
#:key (key-download 'interactive))
"Return the new version, the file name of the new version tarball, and input
changes for PACKAGE; return #f (three values) when PACKAGE is up-to-date.
KEY-DOWNLOAD specifies a download policy for missing OpenPGP keys; allowed
values: 'always', 'never', and 'interactive' (default)."
(match (package-latest-release* package updaters)
(define* (package-update/url-fetch store package source
#:key key-download)
"Return the version, tarball, and input changes needed to update PACKAGE to
SOURCE, an <upstream-source>."
(match source
(($ <upstream-source> _ version urls signature-urls changes)
(let*-values (((name)
(package-name package))
((archive-type)
(let*-values (((archive-type)
(match (and=> (package-source package) origin-uri)
((? string? uri)
(let ((type (file-extension (basename uri))))
@ -373,7 +371,36 @@ values: 'always', 'never', and 'interactive' (default)."
(or signature-urls (circular-list #f)))))
(let ((tarball (download-tarball store url signature-url
#:key-download key-download)))
(values version tarball changes))))
(values version tarball changes))))))
(define %method-updates
;; Mapping of origin methods to source update procedures.
`((,url-fetch . ,package-update/url-fetch)))
(define* (package-update store package updaters
#:key (key-download 'interactive))
"Return the new version, the file name of the new version tarball, and input
changes for PACKAGE; return #f (three values) when PACKAGE is up-to-date.
KEY-DOWNLOAD specifies a download policy for missing OpenPGP keys; allowed
values: 'always', 'never', and 'interactive' (default)."
(match (package-latest-release* package updaters)
((? upstream-source? source)
(let ((method (match (package-source package)
((? origin? origin)
(origin-method origin))
(_
#f))))
(match (assq method %method-updates)
(#f
(raise (condition (&message
(message (format #f (G_ "cannot download for \
this method: ~s")
method)))
(&error-location
(location (package-location package))))))
((_ . update)
(update store package source
#:key-download key-download)))))
(#f
(values #f #f #f))))

1
po/guix/LINGUAS
View File

@ -12,5 +12,6 @@ hu
pl
pt_BR
sr
sv
vi
zh_CN

3619
po/guix/sv.po Normal file
View File

File diff suppressed because it is too large Load Diff

309
tests/accounts.scm Normal file
View File

@ -0,0 +1,309 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (test-accounts)
#:use-module (gnu build accounts)
#:use-module (gnu system accounts)
#:use-module (srfi srfi-19)
#:use-module (srfi srfi-64)
#:use-module (ice-9 vlist)
#:use-module (ice-9 match))
(define %passwd-sample
"\
root:x:0:0:Admin:/root:/bin/sh
charlie:x:1000:998:Charlie:/home/charlie:/bin/sh\n")
(define %group-sample
"\
root:x:0:
wheel:x:999:alice,bob
hackers:x:65000:alice,charlie\n")
(define %shadow-sample
(string-append "\
root:" (crypt "secret" "$6$abc") ":17169::::::
charlie:" (crypt "hey!" "$6$abc") ":17169::::::
nobody:!:0::::::\n"))
(test-begin "accounts")
(test-equal "write-passwd"
%passwd-sample
(call-with-output-string
(lambda (port)
(write-passwd (list (password-entry
(name "root")
(uid 0) (gid 0)
(real-name "Admin")
(directory "/root")
(shell "/bin/sh"))
(password-entry
(name "charlie")
(uid 1000) (gid 998)
(real-name "Charlie")
(directory "/home/charlie")
(shell "/bin/sh")))
port))))
(test-equal "read-passwd + write-passwd"
%passwd-sample
(call-with-output-string
(lambda (port)
(write-passwd (call-with-input-string %passwd-sample
read-passwd)
port))))
(test-equal "write-group"
%group-sample
(call-with-output-string
(lambda (port)
(write-group (list (group-entry
(name "root") (gid 0))
(group-entry
(name "wheel") (gid 999)
(members '("alice" "bob")))
(group-entry
(name "hackers") (gid 65000)
(members '("alice" "charlie"))))
port))))
(test-equal "read-group + write-group"
%group-sample
(call-with-output-string
(lambda (port)
(write-group (call-with-input-string %group-sample
read-group)
port))))
(test-equal "write-shadow"
%shadow-sample
(call-with-output-string
(lambda (port)
(write-shadow (list (shadow-entry
(name "root")
(password (crypt "secret" "$6$abc"))
(last-change 17169))
(shadow-entry
(name "charlie")
(password (crypt "hey!" "$6$abc"))
(last-change 17169))
(shadow-entry
(name "nobody")))
port))))
(test-equal "read-shadow + write-shadow"
%shadow-sample
(call-with-output-string
(lambda (port)
(write-shadow (call-with-input-string %shadow-sample
read-shadow)
port))))
(define allocate-groups (@@ (gnu build accounts) allocate-groups))
(define allocate-passwd (@@ (gnu build accounts) allocate-passwd))
(test-equal "allocate-groups"
;; Allocate GIDs in a stateless fashion.
(list (group-entry (name "s") (gid %system-id-max))
(group-entry (name "x") (gid 900))
(group-entry (name "t") (gid 899))
(group-entry (name "a") (gid %id-min) (password "foo")
(members '("alice" "bob")))
(group-entry (name "b") (gid (+ %id-min 1))
(members '("charlie"))))
(allocate-groups (list (user-group (name "s") (system? #t))
(user-group (name "x") (id 900))
(user-group (name "t") (system? #t))
(user-group (name "a") (password "foo"))
(user-group (name "b")))
(alist->vhash `(("a" . "bob")
("a" . "alice")
("b" . "charlie")))))
(test-equal "allocate-groups with requested GIDs"
;; Make sure the requested GID for "b" is honored.
(list (group-entry (name "a") (gid (+ 1 %id-min)))
(group-entry (name "b") (gid %id-min))
(group-entry (name "c") (gid (+ 2 %id-min))))
(allocate-groups (list (user-group (name "a"))
(user-group (name "b") (id %id-min))
(user-group (name "c")))
vlist-null))
(test-equal "allocate-groups with previous state"
;; Make sure bits of state are preserved: password, GID, no reuse of
;; previously-used GIDs.
(list (group-entry (name "s") (gid (- %system-id-max 1)))
(group-entry (name "t") (gid (- %system-id-max 2)))
(group-entry (name "a") (gid 30000) (password #f)
(members '("alice" "bob")))
(group-entry (name "b") (gid 30001) (password "bar")
(members '("charlie"))))
(allocate-groups (list (user-group (name "s") (system? #t))
(user-group (name "t") (system? #t))
(user-group (name "a") (password "foo"))
(user-group (name "b")))
(alist->vhash `(("a" . "bob")
("a" . "alice")
("b" . "charlie")))
(list (group-entry (name "a") (gid 30000))
(group-entry (name "b") (gid 30001)
(password "bar"))
(group-entry (name "removed")
(gid %system-id-max)))))
(test-equal "allocate-groups with previous state, looping"
;; Check that allocation starts after the highest previously-used GID, and
;; loops back to the lowest GID.
(list (group-entry (name "a") (gid (- %id-max 1)))
(group-entry (name "b") (gid %id-min))
(group-entry (name "c") (gid (+ 1 %id-min))))
(allocate-groups (list (user-group (name "a"))
(user-group (name "b"))
(user-group (name "c")))
vlist-null
(list (group-entry (name "d")
(gid (- %id-max 2))))))
(test-equal "allocate-passwd"
;; Allocate UIDs in a stateless fashion.
(list (password-entry (name "alice") (uid %id-min) (gid 1000)
(real-name "Alice") (shell "/bin/sh")
(directory "/home/alice"))
(password-entry (name "bob") (uid (+ 1 %id-min)) (gid 1001)
(real-name "Bob") (shell "/bin/gash")
(directory "/home/bob"))
(password-entry (name "sshd") (uid %system-id-max) (gid 500)
(real-name "sshd") (shell "/nologin")
(directory "/var/empty"))
(password-entry (name "guix") (uid 30000) (gid 499)
(real-name "Guix") (shell "/nologin")
(directory "/var/empty")))
(allocate-passwd (list (user-account (name "alice")
(comment "Alice")
(home-directory "/home/alice")
(shell "/bin/sh")
(group "users"))
(user-account (name "bob")
(comment "Bob")
(home-directory "/home/bob")
(shell "/bin/gash")
(group "wheel"))
(user-account (name "sshd") (system? #t)
(comment "sshd")
(home-directory "/var/empty")
(shell "/nologin")
(group "sshd"))
(user-account (name "guix") (system? #t)
(comment "Guix")
(home-directory "/var/empty")
(shell "/nologin")
(group "guix")
(uid 30000)))
(list (group-entry (name "users") (gid 1000))
(group-entry (name "wheel") (gid 1001))
(group-entry (name "sshd") (gid 500))
(group-entry (name "guix") (gid 499)))))
(test-equal "allocate-passwd with previous state"
;; Make sure bits of state are preserved: UID, no reuse of previously-used
;; UIDs, and shell.
(list (password-entry (name "alice") (uid 1234) (gid 1000)
(real-name "Alice Smith") (shell "/gnu/.../bin/gash")
(directory "/home/alice"))
(password-entry (name "charlie") (uid 1236) (gid 1000)
(real-name "Charlie") (shell "/bin/sh")
(directory "/home/charlie")))
(allocate-passwd (list (user-account (name "alice")
(comment "Alice")
(home-directory "/home/alice")
(shell "/bin/sh") ;ignored
(group "users"))
(user-account (name "charlie")
(comment "Charlie")
(home-directory "/home/charlie")
(shell "/bin/sh")
(group "users")))
(list (group-entry (name "users") (gid 1000)))
(list (password-entry (name "alice") (uid 1234) (gid 9999)
(real-name "Alice Smith")
(shell "/gnu/.../bin/gash")
(directory "/home/alice"))
(password-entry (name "bob") (uid 1235) (gid 1001)
(real-name "Bob") (shell "/bin/sh")
(directory "/home/bob")))))
(test-equal "user+group-databases"
;; The whole shebang.
(list (list (group-entry (name "a") (gid %id-min)
(members '("bob")))
(group-entry (name "b") (gid (+ 1 %id-min))
(members '("alice")))
(group-entry (name "s") (gid %system-id-max)))
(list (password-entry (name "alice") (real-name "Alice")
(uid %id-min) (gid %id-min)
(directory "/a"))
(password-entry (name "bob") (real-name "Bob")
(uid (+ 1 %id-min)) (gid (+ 1 %id-min))
(directory "/b"))
(password-entry (name "nobody")
(uid 65534) (gid %system-id-max)
(directory "/var/empty")))
(list (shadow-entry (name "alice") (last-change 100)
(password (crypt "initial pass" "$6$")))
(shadow-entry (name "bob") (last-change 50)
(password (crypt "foo" "$6$")))
(shadow-entry (name "nobody") (last-change 100))))
(call-with-values
(lambda ()
(user+group-databases (list (user-account
(name "alice")
(comment "Alice")
(home-directory "/a")
(group "a")
(supplementary-groups '("b"))
(password (crypt "initial pass" "$6$")))
(user-account
(name "bob")
(comment "Bob")
(home-directory "/b")
(group "b")
(supplementary-groups '("a")))
(user-account
(name "nobody")
(group "s")
(uid 65534)
(home-directory "/var/empty")))
(list (user-group (name "a"))
(user-group (name "b"))
(user-group (name "s") (system? #t)))
#:current-passwd '()
#:current-shadow
(list (shadow-entry (name "bob")
(password (crypt "foo" "$6$"))
(last-change 50)))
#:current-groups '()
#:current-time
(lambda (type)
(make-time type 0 (* 24 3600 100)))))
list))
(test-end "accounts")