gnu: Add r-yarn.
* gnu/packages/bioconductor.scm (r-yarn): New variable.
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@ -3879,3 +3879,38 @@ Tumor / Normal status) must also be provided because the test assesses if
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there are global differences in the distributions between the user-defined
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groups.")
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(license license:gpl3+)))
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(define-public r-yarn
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(package
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(name "r-yarn")
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(version "1.8.1")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "yarn" version))
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(sha256
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(base32
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"0c84x1zq34hadpsyaa873r8kg0jcxp09c2z63377hlmhsll90l7s"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biobase" ,r-biobase)
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("r-biomart" ,r-biomart)
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("r-downloader" ,r-downloader)
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("r-edger" ,r-edger)
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("r-gplots" ,r-gplots)
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("r-limma" ,r-limma)
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("r-matrixstats" ,r-matrixstats)
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("r-preprocesscore" ,r-preprocesscore)
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("r-quantro" ,r-quantro)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-readr" ,r-readr)))
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(home-page "https://bioconductor.org/packages/yarn/")
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(synopsis "Robust multi-condition RNA-Seq preprocessing and normalization")
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(description
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"Expedite large RNA-Seq analyses using a combination of previously
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developed tools. YARN is meant to make it easier for the user in performing
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basic mis-annotation quality control, filtering, and condition-aware
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normalization. YARN leverages many Bioconductor tools and statistical
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techniques to account for the large heterogeneity and sparsity found in very
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large RNA-seq experiments.")
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(license license:artistic2.0)))
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