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gnu: bpp: Use the default GCC. 

* gnu/packages/bioinformatics.scm (bpp-core, bpp-phyl, bpp-popgen, bpp-seq,
bppsuite)[inputs]: Remove GCC-5.
This commit is contained in:
Marius Bakke 2019-07-18 23:29:07 +02:00
parent 40a7153d19
commit bc2076f053
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1 changed files with 4 additions and 13 deletions
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gnu/packages/bioinformatics.scm
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@ -1109,9 +1109,6 @@ relying on a complex dependency tree.")
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (arguments
`(#:parallel-build? #f)) `(#:parallel-build? #f))
(inputs
`(("gcc" ,gcc-5))) ; Compilation of bpp-phyl fails with GCC 4.9 so we
; compile all of the bpp packages with GCC 5.
(home-page "http://biopp.univ-montp2.fr") (home-page "http://biopp.univ-montp2.fr")
(synopsis "C++ libraries for Bioinformatics") (synopsis "C++ libraries for Bioinformatics")
(description (description
@ -1147,10 +1144,7 @@ providing them a set of re-usable tools.")
#:out-of-source? #f)) #:out-of-source? #f))
(inputs (inputs
`(("bpp-core" ,bpp-core) `(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq) ("bpp-seq" ,bpp-seq)))
;; GCC 4.8 fails due to an 'internal compiler error', so we use a more
;; modern GCC.
("gcc" ,gcc-5)))
(home-page "http://biopp.univ-montp2.fr") (home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ phylogenetic Library") (synopsis "Bio++ phylogenetic Library")
(description (description
@ -1182,8 +1176,7 @@ library provides phylogenetics-related modules.")
#:tests? #f)) ; There are no tests. #:tests? #f)) ; There are no tests.
(inputs (inputs
`(("bpp-core" ,bpp-core) `(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq) ("bpp-seq" ,bpp-seq)))
("gcc" ,gcc-5)))
(home-page "http://biopp.univ-montp2.fr") (home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ population genetics library") (synopsis "Bio++ population genetics library")
(description (description
@ -1216,8 +1209,7 @@ library provides population genetics-related modules.")
;; so the tests fail. ;; so the tests fail.
#:out-of-source? #f)) #:out-of-source? #f))
(inputs (inputs
`(("bpp-core" ,bpp-core) `(("bpp-core" ,bpp-core)))
("gcc" ,gcc-5))) ; Use GCC 5 as per 'bpp-core'.
(home-page "http://biopp.univ-montp2.fr") (home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ sequence library") (synopsis "Bio++ sequence library")
(description (description
@ -1255,8 +1247,7 @@ library provides sequence-related modules.")
`(("bpp-core" ,bpp-core) `(("bpp-core" ,bpp-core)
("bpp-seq" ,bpp-seq) ("bpp-seq" ,bpp-seq)
("bpp-phyl" ,bpp-phyl) ("bpp-phyl" ,bpp-phyl)
("bpp-phyl" ,bpp-popgen) ("bpp-phyl" ,bpp-popgen)))
("gcc" ,gcc-5)))
(home-page "http://biopp.univ-montp2.fr") (home-page "http://biopp.univ-montp2.fr")
(synopsis "Bioinformatics tools written with the Bio++ libraries") (synopsis "Bioinformatics tools written with the Bio++ libraries")
(description (description