gnu: python-pandas: Update to 0.22.0.

* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Delete file.
* gnu/packages/python.scm (python-pandas): Update to 0.22.0.
[source](patches): Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-LXML.
[arguments]: Replace CHECK-PHASE with custom pytest invocation.
[home-page]: Use HTTPS.
This commit is contained in:
Marius Bakke 2018-02-09 14:40:44 +01:00
parent ba62f087bc
commit ce2cfcabfc
No known key found for this signature in database
GPG Key ID: A2A06DF2A33A54FA
3 changed files with 31 additions and 57 deletions

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@ -1026,7 +1026,6 @@ dist_patch_DATA = \
%D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch \ %D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch \
%D%/packages/patches/python-configobj-setuptools.patch \ %D%/packages/patches/python-configobj-setuptools.patch \
%D%/packages/patches/python-faker-fix-build-32bit.patch \ %D%/packages/patches/python-faker-fix-build-32bit.patch \
%D%/packages/patches/python-pandas-skip-failing-tests.patch \
%D%/packages/patches/python-paste-remove-website-test.patch \ %D%/packages/patches/python-paste-remove-website-test.patch \
%D%/packages/patches/python-paste-remove-timing-test.patch \ %D%/packages/patches/python-paste-remove-timing-test.patch \
%D%/packages/patches/python-pygit2-disable-network-tests.patch \ %D%/packages/patches/python-pygit2-disable-network-tests.patch \

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@ -1,49 +0,0 @@
These tests fail on 32bit architectures.
Upstream bug URL: https://github.com/pandas-dev/pandas/issues/14866
--- a/pandas/tests/indexes/common.py 2017-03-09 00:10:26.063996176 +0100
+++ b/pandas/tests/indexes/common.py 2017-03-09 00:10:53.152844191 +0100
@@ -119,20 +119,6 @@
with tm.assertRaisesRegexp(ValueError, 'Invalid fill method'):
idx.get_indexer(idx, method='invalid')
- def test_ndarray_compat_properties(self):
-
- idx = self.create_index()
- self.assertTrue(idx.T.equals(idx))
- self.assertTrue(idx.transpose().equals(idx))
-
- values = idx.values
- for prop in self._compat_props:
- self.assertEqual(getattr(idx, prop), getattr(values, prop))
-
- # test for validity
- idx.nbytes
- idx.values.nbytes
-
def test_repr_roundtrip(self):
idx = self.create_index()
--- a/pandas/tools/tests/test_tile.py 2017-03-08 17:47:39.762261841 +0100
+++ b/pandas/tools/tests/test_tile.py 2017-03-08 17:48:26.831780495 +0100
@@ -271,19 +271,6 @@
np.array([0, 0, 1, 1], dtype=np.int8))
tm.assert_numpy_array_equal(bins, np.array([0, 1.5, 3]))
- def test_single_bin(self):
- # issue 14652
- expected = Series([0, 0])
-
- s = Series([9., 9.])
- result = cut(s, 1, labels=False)
- tm.assert_series_equal(result, expected)
-
- s = Series([-9., -9.])
- result = cut(s, 1, labels=False)
- tm.assert_series_equal(result, expected)
-
-
def curpath():
pth, _ = os.path.split(os.path.abspath(__file__))
return pth

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@ -1066,24 +1066,48 @@ human-friendly syntax.")
(define-public python-pandas (define-public python-pandas
(package (package
(name "python-pandas") (name "python-pandas")
(version "0.19.2") (version "0.22.0")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "pandas" version)) (uri (pypi-uri "pandas" version))
(sha256 (sha256
(base32 "0540cnbwy2hc4hv2sxfs8i47xi91qzvzxfn80dl785ibiicly3vg")) (base32 "0v0fi2i10kwnmlpsl6f1fgajcpx3q6766qf6xqi5kw3ivn8l1aa4"))))
(patches
(search-patches "python-pandas-skip-failing-tests.patch"))))
(build-system python-build-system) (build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
(guix build python-build-system)
(ice-9 ftw)
(srfi srfi-26))
#:phases (modify-phases %standard-phases
(replace 'check
(lambda _
(let ((build-directory
(string-append
(getcwd) "/build/"
(car (scandir "build"
(cut string-prefix? "lib." <>))))))
(with-directory-excursion build-directory
;; Delete tests that require "moto" which is not yet in Guix.
(for-each delete-file
'("pandas/tests/io/conftest.py"
"pandas/tests/io/json/test_compression.py"
"pandas/tests/io/test_excel.py"))
(invoke "pytest" "-v" "pandas" "-k"
(string-append
"not network and not disabled"
;; XXX: Due to the deleted tests above.
" and not test_read_s3_jsonl")))))))))
(propagated-inputs (propagated-inputs
`(("python-numpy" ,python-numpy) `(("python-numpy" ,python-numpy)
("python-pytz" ,python-pytz) ("python-pytz" ,python-pytz)
("python-dateutil" ,python-dateutil))) ("python-dateutil" ,python-dateutil)))
(native-inputs (native-inputs
`(("python-nose" ,python-nose) `(("python-cython" ,python-cython)
("python-cython" ,python-cython))) ("python-lxml" ,python-lxml)
(home-page "http://pandas.pydata.org") ("python-nose" ,python-nose)
("python-pytest" ,python-pytest)))
(home-page "https://pandas.pydata.org")
(synopsis "Data structures for data analysis, time series, and statistics") (synopsis "Data structures for data analysis, time series, and statistics")
(description (description
"Pandas is a Python package providing fast, flexible, and expressive data "Pandas is a Python package providing fast, flexible, and expressive data