gnu: Add snakemake-4.
* gnu/packages/python.scm (snakemake-4): New variable. * gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq, pigx-chipseq)[inputs]: Use it.
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@ -12837,7 +12837,7 @@ once. This package provides tools to perform Drop-seq analyses.")
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#t)))))
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(inputs
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`(("gzip" ,gzip)
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("snakemake" ,snakemake)
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("snakemake" ,snakemake-4)
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("fastqc" ,fastqc)
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("multiqc" ,multiqc)
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("star" ,star)
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@ -12931,7 +12931,7 @@ expression report comparing samples in an easily configurable manner.")
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("fastqc" ,fastqc)
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("bowtie" ,bowtie)
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("idr" ,idr)
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("snakemake" ,snakemake)
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("snakemake" ,snakemake-4)
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("samtools" ,samtools)
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("bedtools" ,bedtools)
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("kentutils" ,kentutils)))
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@ -12992,7 +12992,7 @@ in an easily configurable manner.")
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("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1)
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("python-wrapper" ,python-wrapper)
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("python-pyyaml" ,python-pyyaml)
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("snakemake" ,snakemake)
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("snakemake" ,snakemake-4)
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("bismark" ,bismark)
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("fastqc" ,fastqc)
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("bowtie" ,bowtie)
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@ -13041,7 +13041,7 @@ methylation and segmentation.")
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("python-loompy" ,python-loompy)
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("ghc-pandoc" ,ghc-pandoc-1)
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("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc-with-pandoc-1)
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("snakemake" ,snakemake)
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("snakemake" ,snakemake-4)
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("star" ,star)
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("r-minimal" ,r-minimal)
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("r-argparser" ,r-argparser)
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@ -5206,6 +5206,24 @@ providing a clean and modern domain specific specification language (DSL) in
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Python style, together with a fast and comfortable execution environment.")
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(license license:expat)))
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;; This is currently needed for the pigx-* packages.
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(define-public snakemake-4
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(package (inherit snakemake)
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(version "4.4.0")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "snakemake" version))
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(sha256
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(base32 "0g0paia4z7w3srnqdmavq3hrb2x7qnpf81jx50njl0p7y4y0j8jv"))))
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(propagated-inputs
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`(("python-wrapt" ,python-wrapt)
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("python-requests" ,python-requests)
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("python-appdirs" ,python-appdirs)
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("python-configargparse" ,python-configargparse)
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("python-pyyaml" ,python-pyyaml)
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("python-ratelimiter" ,python-ratelimiter)))))
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(define-public python-pyqrcode
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(package
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(name "python-pyqrcode")
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