gnu: Add r-genomegraphs.
* gnu/packages/bioconductor.scm (r-genomegraphs): New variable.
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@ -5947,3 +5947,31 @@ provides methods for retrieving enriched pathways.")
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model, amino acid change consequence, minor allele frequencies across human
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model, amino acid change consequence, minor allele frequencies across human
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populations, splice site strength, conservation, etc.")
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populations, splice site strength, conservation, etc.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-genomegraphs
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(package
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(name "r-genomegraphs")
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(version "1.44.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "GenomeGraphs" version))
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(sha256
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(base32
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"026skcn2cqchlzaqsnk11gb8d8aq1rz7lrnx4mmsba234mh4j7kd"))))
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(properties `((upstream-name . "GenomeGraphs")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biomart" ,r-biomart)))
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(home-page "https://bioconductor.org/packages/GenomeGraphs/")
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(synopsis "Plotting genomic information from Ensembl")
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(description
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"Genomic data analyses requires integrated visualization of known genomic
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information and new experimental data. GenomeGraphs uses the biomaRt package
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to perform live annotation queries to Ensembl and translates this to e.g.
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gene/transcript structures in viewports of the grid graphics package. This
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results in genomic information plotted together with your data. Another
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strength of GenomeGraphs is to plot different data types such as array CGH,
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gene expression, sequencing and other data, together in one plot using the
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same genome coordinate system.")
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(license license:artistic2.0)))
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