aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
4c0c4db070
utils: Move base16 procedures to (guix base16).
...
* guix/utils.scm (bytevector->base16-string, base16-string->bytevector):
Move to...
* guix/base16.scm: ... here. New file.
* tests/utils.scm ("bytevector->base16-string->bytevector"): Move to...
* tests/base16.scm: ... here. New file.
* Makefile.am (MODULES): Add guix/base16.scm.
(SCM_TESTS): Add tests/base16.scm.
* build-aux/download.scm, guix/derivations.scm,
guix/docker.scm, guix/import/snix.scm, guix/pk-crypto.scm,
guix/scripts/authenticate.scm, guix/scripts/download.scm,
guix/scripts/hash.scm, guix/store.scm, tests/hash.scm,
tests/pk-crypto.scm: Adjust imports accordingly.
2017-03-16 22:50:14 +01:00
57075ade97
import: stackage: Avoid using (guix ui) in importer code.
...
* guix/import/stackage.scm (stackage->guix-package, stackage-lts-info-fetch):
Raise 'message' condition instead of using 'leave' from (guix ui).
* guix/scripts/import/stackage.scm (guix-import-stackage): Handle conditions.
2017-02-14 08:38:45 +01:00
a4824c60ef
import: hackage: Handle unknown packages gracefully.
...
* guix/import/hackage.scm (hackage-fetch): Add 'guard'.
2017-02-09 19:36:08 +01:00
bc5844d149
import: Add stackage importer and updater.
...
* guix/import/stackage.scm: New file.
* guix/scripts/import/stackage.scm: New file.
* Makefile.am (MODULES): Add new files.
* guix/scripts/import.scm (importers): Add "stackage".
* guix/scripts/refresh.scm (%updaters): Add %stackage-updater.
* doc/guix.texi (Invoking 'guix import'): Document the importer.
(Invoking 'guix refresh'): Add stackage to option --type valid values.
* guix/import/hackage.scm (guix-package->hackage-name, hackage-fetch,
hackage-source-url, hackage-cabal-url, hackage-package?): Export them.
2017-02-09 19:36:08 +01:00
81e0bc1834
import: json: Explicitly ask for JSON data.
...
* guix/import/json.scm (json-fetch): Add #:headers to http-fetch call.
2017-02-09 19:36:04 +01:00
4eaac4b722
import: pypi: Correctly handle multiple-URL origins.
...
Fixes <https://bugs.gnu.org/25635 >.
Reported by Sergei Trofimovich <slyfox@inbox.ru>.
* guix/import/pypi.scm (guix-package->pypi-name)[url->pypi-name]: New
procedure.
Rewrite body to match lists in addition to strings.
* tests/pypi.scm ("guix-package->pypi-name, several URLs"): New test.
2017-02-08 16:17:05 +01:00
f9704f179a
Add (guix memoization).
...
* guix/combinators.scm (memoize): Remove.
* guix/memoization.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
guix/build-system/gnu.scm, guix/build-system/python.scm,
guix/derivations.scm, guix/gnu-maintenance.scm,
guix/import/cran.scm, guix/import/elpa.scm,
guix/modules.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/store.scm, guix/utils.scm: Adjust imports accordingly.
2017-01-28 18:55:20 +01:00
21f4a7c116
import: github: Better tolerate unexpected file extensions.
...
* guix/import/github.scm (find-extension): Add ".tbz".
(updated-github-url): When 'find-extension' returns #f, use "" for EXT.
2017-01-28 00:38:20 +01:00
2f977d92d3
import: pypi: Don't add setuptools to propagated-inputs.
...
* guix/import/pypi.scm (compute-inputs): Don't add setuptools to the imported
package's propagated-inputs.
2017-01-26 13:44:31 +01:00
d18b79fed8
import: github: Catch HTTP 403 error during fetch.
...
* guix/import/github.scm (json-fetch*): Catch 403 HTTP error that may be
raised if a github token has not been set.
Signed-off-by: Mathieu OTHACEHE <m.othacehe@gmail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-19 17:17:16 +01:00
608a50b66c
http-client: Provide 'User-Agent' header by default.
...
* guix/http-client.scm (http-fetch): Add #:headers parameter and honor
it. Rename 'auth-header' to 'headers'.
* guix/import/github.scm (json-fetch*): Add comment about required
User-Agent.
2017-01-13 18:24:19 +01:00
4cd5ec801b
import: github: Fix regression on the /releases retrieval.
...
Fixes a regression introduced in
62bd24db39
2017-01-13 18:24:19 +01:00
f1d136957d
build-system: cargo: Handle Cargo.lock file not present.
...
* guix/build-system/cargo.scm (cargo-build): Add src output.
(private-keywords): Add #:outputs.
* guix/build/cargo-build-system.scm (configure): Use /share/rust-source
when replacing inputs.
(build, check): Don't do anything when there isn't a Cargo.lock file
present.
(install): Install sources to src output. When a Cargo.lock file is
present use cargo install to install binaries to out.
* guix/import/crate.scm (make-crate-sexp): Importer uses the src output
for crate inputs by default.
* guix/import/utils.scm (package-names->package-inputs, maybe-inputs,
maybe-native-inputs): Take an optional output argument.
* tests/crate.scm (crate->guix-package test): Update.
Problem reported by Francisco Gómez García <espectalll@kydara.com>.
2017-01-01 18:20:52 +01:00
f53a5514e0
import: crate: Provide a default home-page value.
...
* guix/import/crate.scm (make-crate-sexp): Provide a default home-page
value.
* tests/crate.scm (test-crate): Add repository field.
Problem reported by ng0 <ng0@libertad.pw>.
2017-01-01 18:12:06 +01:00
681a555b83
import: elpa: Import dependencies as propagated-inputs
...
* guix/import/elpa.scm (elpa-package->sexp): Import dependencies as
propagated-inputs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 18:22:49 +01:00
36225d4fef
import: elpa: Fix call-with-downloaded-file
...
* guix/import/elpa.scm (call-with-downloaded-file): Make function behaviour
match documentation string.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-12-29 18:22:49 +01:00
62bd24db39
import: github: Use 'json-fetch'.
...
* guix/import/github.scm (json-fetch*): Remove.
(latest-released-version): Adjust accordingly.
2016-12-20 19:14:41 +01:00
4cb7786eff
import: pypi: Match new 'pypi-uri' domain in updater.
...
* guix/import/pypi.scm (pypi-package?): Match pypi.io domain.
2016-12-20 12:57:26 +01:00
fdbc84b056
import cran: Handle HTTP errors.
...
Fixes <http://bugs.gnu.org/23479 >.
* guix/import/cran.scm (fetch-description): Return #f in case of HTTP
errors.
2016-12-17 19:13:42 +01:00
94e907b962
import cran: Add recursive importer.
...
* guix/import/cran.scm (recursive-import): New variable.
(cran->guix-package): Memoize the procedure.
2016-12-17 19:12:55 +01:00
b26abe4f14
import cran: Ignore default R packages.
...
* guix/import/cran.scm (default-r-packages): New variable.
(description->package): Drop default R packages from list of inputs.
2016-12-17 15:56:48 +01:00
ad68f7fa58
import cran: description->package: Also return package dependencies.
...
* guix/import/cran.scm (description->package): Return package
dependencies in addition to generated package expression.
2016-12-17 15:56:48 +01:00
bfa0c752bc
import cran: Move guix-name to top-level.
...
* guix/import/cran.scm (guix-name): Move to top-level.
2016-12-17 15:56:48 +01:00
2e5f32ce1b
import cran: Remove more invalid characters from package names.
...
* guix/import/cran.scm (guix-name): Replace period and underscore with
dash; always prepend package names with "r-".
2016-12-17 15:56:47 +01:00
576eda6d02
import cran: Handle BSD licenses with LICENSE file.
...
* guix/import/cran.scm (string->license): Add cases for BSD licenses
with LICENSE file.
2016-12-17 15:56:47 +01:00
741d68c20d
import cran: Translate MIT to the Expat license.
...
* guix/import/cran.scm (string->license): Translate "MIT" license to
Expat license.
2016-12-17 15:56:47 +01:00
13f54d081b
import cran: Do not use "or later" licenses by default.
...
* guix/import/cran.scm (string->license): Use exact license versions.
2016-12-17 15:56:39 +01:00
8ac5298786
import: Add updater for rust crates.
...
* guix/import/crate.scm (crate-package?, latest-release,
%crate-updater): New variables.
* guix/scripts/refresh.scm (%updaters): Add crate updater.
* doc/guix.texi: Add crate updater to table.
2016-12-14 16:30:42 +01:00
3e0c036584
import: Add importer for rust crates.
...
* guix/import/crate.scm: New file.
* guix/scripts/import/crate.scm: New file.
* guix/scripts/import.scm (importers): Add crate importer.
* tests/crate.scm: New file.
* doc/guix.texi: Add crate importer to table.
* Makefile.am (MODULES, SCM_TESTS): Add files.
2016-12-14 16:30:42 +01:00
bb3f36ed4c
import: utils: Add some utilities.
...
* guix/import/utils.scm (maybe-inputs, maybe-native-inputs,
package->definition): New variables.
2016-12-14 16:30:42 +01:00
ff55fe5599
import: cpan: Add updater.
...
* guix/import/cpan.scm (module->dist-name): Fetch the field of interest.
(cpan-fetch): Accept release name rather than module name.
(fix-source-url): Rename to ...
(cpan-source-url): ... this. Take metadata as parameter.
(package->upstream-name, cpan-version, cpan-package?, latest-release):
New procedures.
(cpan-module->sexp): Use cpan-version and cpan-source-url.
(%cpan-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %CPAN-UPDATER.
2016-12-12 22:22:33 -06:00
d391ad57d6
import: cpan: Move core-module? to top-level.
...
* guix/import/cpan.scm (cpan-module->sexp): Move local core-module?
procedure to ...
(core-module?): ... here.
2016-12-12 22:22:33 -06:00
63773200d7
import: json: Silence json-fetch output.
...
* guix/import/json.scm (json-fetch): Use http-fetch instead of url-fetch
to avoid writing to stdout and a temporary file for each invocation.
* guix/import/gem.scm (rubygems-fetch): Do not redirect json-fetch
output to /dev/null.
* guix/import/pypi.scm (pypi-fetch): Likewise.
2016-12-12 22:22:02 -06:00
c91b368e96
import/cpan: Maybe coerce version to string.
...
* guix/import/cpan.scm (cpan-module->sexp) <version>: Test if version in
meta is string or number. If it is number, coerce to string.
2016-11-14 00:06:09 +01:00
e3100110ce
import: cran: Fix off-by-one error.
...
* guix/import/cran.scm (package->upstream-name): Do not include leading
slash in upstream name URL.
2016-11-03 16:03:28 +01:00
a98470b5be
import cran: Use URL for Bioconductor 3.4.
...
* guix/import/cran.scm (%bioconductor-svn-url): Update to release URL
for version 3.4.
2016-10-26 09:28:06 +02:00
b5c347ad3d
import: pypi: All inputs are propagated-inputs by default.
...
* guix/import/pypi.scm (maybe-inputs): Return inputs as
"propagated-inputs".
2016-10-23 19:23:14 +02:00
b37e1e6428
import: utils: Remove dependency on (json) module.
...
This fixes a regression introduced by commit
fbe9c10128
2016-10-16 19:19:31 +03:00
523b77faef
import: github: Add .love extension.
...
* guix/import/github.scm (find-extension): Add '.love' extension to the
list of extensions checked.
2016-10-10 11:52:03 +03:00
11e296ef30
import: utils: Refactor license->symbol.
...
* guix/import/utils.scm (license->symbol): Work for all licenses.
* tests/import-utils.scm (license->symbol): Add test.
2016-09-28 13:17:15 +02:00
59b2034787
import: utils: Add spdx-string->license.
...
* guix/import/utils.scm (spdx-string->license): New variable.
* guix/licenses.scm (agpl1, fdl1.2+): New variables.
2016-09-28 13:15:31 +02:00
263ac57fc2
import: Move string->license to importers.
...
* guix/import/gem.scm (string->license): Move from (guix import utils).
* guix/import/pypi.scm (string->license): Move from (guix import utils).
2016-09-28 12:47:29 +02:00
fbe9c10128
import: Reorder imports in (guix import utils).
...
* guix/import/utils.scm (define-module): Reorder imports alphabetically.
2016-09-28 12:47:10 +02:00
18f7473504
import: hackage: Default to https urls.
...
* guix/import/hackage.scm (hackage-source-url, hackage-cabal-url): Use https
for hackage.haskell.org.
2016-08-30 22:38:16 +03:00
7a62263ee5
import: cpan: Use tls to query api.metacpan.org.
...
* guix/import/cpan.scm (module->dist-name, cpan-fetch-module): Use tls
for api.metacpan.org.
Signed-off-by: Eric Bavier <bavier@member.fsf.org>
2016-08-30 13:21:07 -05:00
a34b236c17
import: Importers return prefixed licenses.
...
* guix/import/utils.scm
(define-module): Import licenses with license: prefix.
(string->licenses): Use prefixed licenses.
(license->symbol): Return symbols with the prefix license:.
* guix/tests/pypi.scm (pypi->guix-package): Update test cases.
* guix/tests/gem.scm (gem->guix-package): Update test case.
2016-08-28 14:04:50 +02:00
8173ceee1f
import: pypi: Correctly handle new-style URLs.
...
Fixes <http://bugs.gnu.org/23997 >.
* guix/import/pypi.scm (guix-package->pypi-name): Rewrite using
'basename' and 'hyphen-package-name->name+version'.
* tests/pypi.scm ("guix-package->pypi-name, old URL style")
("guix-package->pypi-name, new URL style"): New tests.
2016-07-26 17:49:34 +02:00
5b8e564ccd
import: cpan: Use our mirrors for 'https' URLs.
...
* guix/import/cpan.scm (fix-source-url): New procedure.
(cpan-module->sexp): Use it to construct our source-url.
* tests/cpan.scm: Add tests for fix-source-url.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-03 23:58:29 +02:00
aebd383d04
import: pypi: do not fail when 'run_requires' is missing from the metadata.
...
* guix/import/pypi.scm (read-wheel-metadata): do not crash when 'run_requires'
is missing from the metadata.
2016-06-25 15:33:06 +02:00
266785d21e
import: pypi: read requirements from wheels.
...
* doc/guix.tex (Invoking guix import): Mention that the pypi importer
works better with "unzip".
* guix/import/pypi.scm (latest-wheel-release,
wheel-url->extracted-directory): New procedures.
* tests/pypi.scm (("pypi->guix-package, wheels"): New test.
2016-06-14 22:03:22 +02:00
dc794a7238
gnu-maintenance: Replace 'find-packages' with 'find-package' (singular).
...
Fixes <http://bugs.gnu.org/23718 >.
Reported by Efraim Flashner <efraim@flashner.co.il>.
* guix/gnu-maintenance.scm (find-packages): Remove.
(find-package): New procedure.
* guix/import/gnu.scm (gnu->guix-package): Use 'find-package' instead of
'find-packages' and adjust accordingly.
2016-06-08 19:07:58 +02:00
405d043ddd
import: github: Tiny cosmetic change.
...
* guix/import/github.scm (find-extension): Use a one-argument lambda.
2016-05-31 23:38:51 +02:00
b93efac026
import github: Add to extension list.
...
* guix/import/github.scm (find-extension): Add '.tgz' extension.
2016-05-31 22:05:44 +03:00
149590380a
import: Gracefully report import failures.
...
Previously, something like 'guix import gnu which' would spit out a
backtrace if, say, the 'which' tarball could not be authenticated.
* guix/upstream.scm (download-tarball): Mention failure modes in
docstring.
* guix/import/gnu.scm (gnu-package->sexp): Return #f when
'download-tarball' returns #f.
* guix/scripts/import.scm (guix-import): Call 'leave' when IMPORTER does
not return a (package ...) sexp.
2016-05-17 14:02:48 +02:00
9916ae15bb
import cran: latest-bioconductor-release: Wrap Bioconductor URL in list.
...
* guix/import/cran.scm (latest-bioconductor-release): Wrap Bioconductor
URL in list in the "urls" field of the "upstream-source" value.
2016-05-16 21:00:41 +02:00
9583e07cae
import cran: Use URL for Bioconductor 3.3.
...
* guix/import/cran.scm (%bioconductor-svn-url): Update to release URL
for version 3.3.
2016-05-16 20:52:46 +02:00
958dd3ce68
utils: Move combinators to (guix combinators).
...
* guix/utils.scm (compile-time-value, memoize, fold2)
(fold-tree, fold-tree-leaves): Move to...
* guix/combinators: ... here. New file.
* tests/utils.scm ("fold2, 1 list", "fold2, 2 lists")
(fold-tree tests): Move to...
* tests/combinators.scm: ... here. New file.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
gnu/services/herd.scm, guix/build-system/gnu.scm,
guix/build-system/python.scm, guix/derivations.scm,
guix/gnu-maintenance.scm, guix/import/elpa.scm,
guix/scripts/archive.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/scripts/size.scm, guix/scripts/substitute.scm,
guix/serialization.scm, guix/store.scm, guix/ui.scm: Adjust imports
accordingly.
2016-05-04 23:35:55 +02:00
b77d17d023
import: cpan: check version bounds on core modules.
...
Modules may be removed from Perl's core, so we must check for a removal
version.
* guix/import/cpan.scm (cpan-module->sexp)[core-module?]: Also check
version upper bound.
2016-04-25 18:31:45 -05:00
7d27a0259b
upstream: Pass a package object to updaters.
...
* guix/upstream.scm (package-update-path): Pass PACKAGE to
'latest-release'.
* guix/gnu-maintenance.scm (latest-release*)
(latest-gnome-release, latest-xorg-release): Adjust accordingly.
* guix/import/cran.scm (latest-cran-release):
(latest-bioconductor-release): Likewise.
* guix/import/elpa.scm (latest-release): Likewise.
* guix/import/gem.scm (latest-release): Likewise.
* guix/import/github.scm (latest-release): Likewise.
* guix/import/hackage.scm (latest-release): Likewise.
* guix/import/pypi.scm (latest-release): Likewise.
2016-04-15 00:32:18 +02:00
42efe27a30
import: Add Hackage updater.
...
* guix/import/hackage.scm (guix-package->hackage-name, hackage-package?)
(latest-release): New procedures.
(%hackage-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add it.
* doc/guix.texi (Invoking guix refresh): Mention it.
2016-03-30 23:19:24 -05:00
2ae9c63f15
import: hackage: Silence download output.
...
* guix/import/hackage.scm (hackage-fetch): Use http-fetch to avoid
progress output from url-fetch.
2016-03-30 23:19:24 -05:00
f9ea74ad04
import: hackage: Factorize url synthesis.
...
* guix/import/hackage.scm (hackage-source-url, hackage-cabal-url): New
procedures.
(hackage-fetch, hackage-module->sexp): Use them.
2016-03-30 23:19:24 -05:00
b98293ebed
import: cran: Accept single URL in addition to single URL.
...
* guix/import/cran.scm (package->upstream-name): Match single URL in
addition to list of URLs.
2016-03-22 17:57:40 +01:00
522773b700
import: pypi: Emit 'pypi-uri' only when it yields the right URL.
...
Fixes <http://bugs.gnu.org/23062 >.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* guix/import/pypi.scm (make-pypi-sexp): Check whether 'pypi-uri'
returns SOURCE-URL and fall back to the full URL otherwise.
* tests/pypi.scm ("pypi->guix-package"): Adjust expected URI
accordingly.
Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2016-03-19 23:54:19 +01:00
322bb53c7a
import: snix: Use the right 'package-name->name+version'.
...
Fixes a regression introduced in
1b846da8c3
2016-03-06 23:16:35 +01:00
917a2a58ec
import: Add github-updater.
...
* guix/import/github.scm: New file.
* guix/scripts/refresh.scm (%updaters): Add %GITHUB-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention it.
* Makefile.am (MODULES): Add gnu/import/github.scm.
2016-02-26 22:06:34 -05:00
fbc5b815cc
import: gem: Add updater.
...
* guix/import/gem.scm (guix-package->gem-name,
gem-package?, latest-release): New procedures.
(%gem-updater): New variable.
(rubygems-fetch): Wrap body in
'call-with-output-file' and 'with-error-to-port'.
* guix/scripts/refresh.scm (%updaters): Add %GEM-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention RubyGems.
2016-02-20 20:46:10 +10:00
74e667d149
packages: Use '@' in package record printers.
...
* guix/packages.scm <package>: Use '@' in record printer.
* guix/import/cabal.scm <cabal-package>: Likewise
* guix/import/elpa.scm <elpa-package>: Likewise.
* tests/packages.scm: Adapt to it.
2016-01-28 16:31:38 +01:00
e88d5fa9eb
import: gem: Beautify only the description, not the synopsis.
...
* guix/import/gem.scm (make-gem-sexp): Add synopsis argument.
(gem->guix-package): Pass unbeautified synopsis to make-gem-sexp.
* tests/gem.scm: Adapt it.
2016-01-20 21:52:52 +10:00
d0bd632f89
import: Add Bioconductor importer and updater.
...
* guix/import/cran.scm (%bioconductor-updater,
latest-bioconductor-release, bioconductor-package?): New procedures.
(cran->guix-package): Support repositories other than CRAN.
(%bioconductor-url, %bioconductor-svn-url): New variables.
(description->package): Update signature to distinguish between packages
from different repositories.
(latest-release): Rename procedure ...
(latest-cran-release): ... to this.
(cran-package?): Do not assume all R packages are available on CRAN.
* tests/cran.scm: Update tests.
* guix/scripts/import/cran.scm: Add "--archive" option and default to
CRAN.
* guix/scripts/refresh.scm (%updaters): Add "%bioconductor-updater".
* doc/guix.texi: Document Bioconductor importer and updater.
2016-01-20 12:41:28 +01:00
869cda545d
import: gem: Beautify description field.
...
* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'.
2016-01-14 19:44:40 +10:00
2028a2c960
import: cran: Move beautify-description to utils module.
...
* guix/import/cran.scm (beautify-description): Move from here...
* guix/import/utils.scm: ... to here.
2016-01-14 19:44:36 +10:00
34a75d35bb
import: Rename "cran-fetch" to "fetch-description".
...
* guix/import/cran.scm (cran-fetch): Rename procedure ...
(fetch-description): ... to this.
2016-01-07 17:18:04 +01:00
d1c116089b
import: Add package->upstream-name procedure.
...
* guix/import/cran.scm (package->upstream-name): New procedure.
2016-01-07 17:18:02 +01:00
be036757bd
import: Drop empty list items.
...
* guix/import/cran.scm (listify): Remove empty strings from result list.
2015-12-21 15:24:54 +01:00
0f6b9e9828
import: cran: Parse DESCRIPTION instead of HTML.
...
* guix/import/cran.scm (description->alist, listify,
beautify-description, description->package): New procedures.
(table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove
proceduces.
(latest-release): Use parsed DESCRIPTION instead of SXML.
* tests/cran.scm: Rewrite to match importer.
2015-12-11 15:35:07 +01:00
b6a222757b
import: cran: Match more license strings.
...
* guix/import/cran.scm (string->license): Match more license strings to
license symbols.
2015-12-11 15:35:07 +01:00
85dce718cb
import: pypi: Updater silently ignores packages without source.
...
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00764.html >.
* guix/import/pypi.scm (&missing-source-error): New error type.
(latest-source-release): Raise it instead of using 'error'.
(pypi->guix-package): Guard against it and use 'leave' to report the
error.
(latest-release): Guard against it and return #f when caught.
2015-12-01 23:18:48 +01:00
96018e21e7
import: hackage: Handle CRLF end of line style.
...
* guix/import/hackage.scm (hackage-fetch, hackage->guix-package): Use
'canonical-newline-port'.
2015-11-26 18:17:23 +01:00
94abc84887
import: hackage: Make parsing of tests and fields more flexible.
...
* guix/import/cabal.scm (is-test): Allow spaces between keyword and
parentheses.
(is-id): Add argument 'port'. Allow spaces between keyword and column.
(lex-word): Adjust call to 'is-id'.
2015-11-26 18:17:23 +01:00
876fd23ab6
import: hackage: Make it resilient to missing final newline.
...
* guix/import/cabal.scm (peek-next-line-indent): Check for missing final
newline.
2015-11-26 18:17:23 +01:00
9be54eb1b1
import: hackage: Imporve parsing of tests.
...
* guix/import/cabal.scm (lex-word): Add support for tests with no spaces.
(impl): Rewrite.
2015-11-26 18:17:23 +01:00
7716f55c83
import: hackage: Add recognition of 'true' and 'false' symbols.
...
* guix/import/cabal.scm (is-true, is-false, lex-true, lex-false): New procedures.
(lex-word): Use them.
(make-cabal-parser): Add TRUE and FALSE tokens.
(eval): Add entries for 'true and 'false symbols.
2015-11-26 18:17:22 +01:00
32728adb95
import: pypi: Make downloads silent.
...
* guix/import/pypi.scm (pypi-fetch): Wrap body in
'call-with-output-file' and 'with-error-to-port'.
2015-11-04 00:12:19 +01:00
d1cb7e9562
import: pypi: Add missing copyright line.
...
* guix/import/pypi.scm: Add missing copyright line for bab020d
2015-11-04 00:12:19 +01:00
bab020d7ca
import: pypi: add updater
...
* guix/import/pypi.scm (guix-package->pypi-name,
latest-release): New procedures.
(%pypi-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %PYPI-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention PyPI
2015-11-03 23:41:25 +01:00
d8bdd38201
import: pypi: Use "pypi-uri" instead of building the URL manually.
...
* guix/import/pypi.scm (make-pypi-sexp): Use "pypi-uri".
* tests/pypi.scm: Update the tests accordingly.
2015-11-03 21:38:13 +01:00
3195e19de2
import: gnu: Update to the (guix upstream) API.
...
This is a followup to 0a7c5a0
2015-11-03 00:59:28 +01:00
7e6b490d04
upstream: Add 'description' field to 'upstream-updater'.
...
Suggested by Ludovic Courtès <ludo@gnu.org>.
* guix/upstream.scm (<upstream-updater>): Use 'define-record-type*'.
[description]: New field.
(lookup-updater): Adjust accordingly.
* guix/gnu-maintenance.scm (%gnu-updater): Likewise.
* guix/import/cran.scm (%cran-updater): Likewise.
* guix/import/elpa.scm (%elpa-updater): Likewise.
* po/guix/POTFILES.in: Add guix/scripts/import/cran.scm and
guix/gnu-maintenance.scm.
2015-10-27 21:54:57 +03:00
759756a992
import: hackage: Update GHC libraries for 7.10.2.
...
Update ghc-standard-libraries to match the output of `ghc-pkg list` when
using GHC 7.10.2.
* guix/import/hackage.scm (ghc-standard-libraries): Sort and update list
of core GHC libraries.
2015-10-23 09:10:52 +02:00
102eac2a0a
import: cran: Add copyright notice.
...
Add notice for commit d882c23.
2015-10-21 14:51:30 +02:00
053cfdb3d6
import: cran: Avoid HTTP redirect.
...
* guix/import/cran.scm (cran-fetch): Add trailing slash in URL to avoid
HTTP redirect.
2015-10-21 14:44:41 +02:00
d882c235d9
import: cran: Add updater.
...
* guix/import/cran.scm (downloads->url, nodes->text): New procedures.
(cran-sxml->sexp): Use them. Remove equivalent local code.
(latest-release, cran-package?): New procedures.
(%cran-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %CRAN-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention CRAN.
2015-10-21 14:44:41 +02:00
a7aac93625
import: elpa: Add updater.
...
* guix/import/elpa.scm (latest-release, package-from-gnu.org?): New
procedures.
(%elpa-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %ELPA-UPDATER.
2015-10-21 14:44:38 +02:00
218622a737
import: elpa: Use 'http-fetch/cached' to retrieve the archive.
...
* guix/import/elpa.scm (elpa-fetch-archive): Set %HTTP-CACHE-TTL to 6
hours.
(call-with-downloaded-file): Use 'http-fetch/cached' instead of
'url-fetch'.
2015-10-21 14:43:34 +02:00
72c62716be
import: snix: Adjust names of license attributes.
...
* guix/import/snix.scm (license-variable): Adjust names to current
Nixpkgs.
2015-10-06 23:51:04 +02:00
e3302fec18
import: pypi: Remove unused procedure.
...
* guix/import/pypi.scm (join): Remove.
2015-10-05 23:10:14 +02:00
a52b625152
import: cran-sxml->sexp: Use cran-uri in package expression.
...
* guix/import/cran.scm (cran-sxml->sexp): Use the cran-uri procedure in
the generated package expression.
2015-09-21 10:48:26 +02:00
a96524cc7d
import: gem: Fix minor bug and add unit test.
...
* guix/import/gem.scm (make-gem-sexp): Properly handle an empty list of
licenses. When rendering a list of licenses, cons 'list onto the front of
the expression.
* tests/gem.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
2015-09-01 20:00:01 -04:00
e1248602f9
import: Add 'cran' importer.
...
* guix/import/cran.scm: New file.
* guix/scripts/import.scm: Add "cran" to 'importers'.
* guix/scripts/import/cran.scm: New file.
* tests/cran.scm: New file.
* Makefile.am (MODULES): Add 'guix/import/cran.scm' and
'guix/scripts/import/cran.scm'.
(SCM_TESTS): Add 'tests/cran.scm'.
* doc/guix.texi (Invoking guix import): Document it.
* po/guix/POTFILES.in: Add 'guix/scripts/import/cran.scm'.
2015-08-31 15:39:34 +02:00
3aae8145a7
import: Add Ruby gem importer.
...
* gnu/scripts/import.scm (importers): Add "gem".
* gnu/import/gem.scm: New file.
* gnu/scripts/import/gem.scm: New file.
* Makefile.am (MODULES): Add them.
* guix.texi ("invoking guix import"): Document it.
2015-08-27 19:45:06 -04:00
140b304815
import: pypi: Move generally useful procedures to utils module.
...
* guix/import/pypi.scm (make-pypi-sexp): Factorize license to symbol
conversion code.
(string->license, snake-case, guix-hash-url): Move from here...
* guix/import/utils.scm: ... to here.
(license->symbol): New procedure.
2015-08-27 18:02:35 -04:00
6544aba5fc
import: elpa: Improve error message reporting.
...
* guix/import/elpa.scm (filter-dependencies): Fix bug.
(call-with-downloaded-file): Add optional parameter 'error-thunk'.
(fetch-package-description): Use it.
2015-08-01 12:36:21 +02:00
dee2b3bdb9
import: pypi: Improve warning message.
...
* guix/import/pypi.scm (guess-requirements): Add missing newline and quotes in
warning.
2015-07-21 21:14:33 +02:00
d8b6fcdeda
import: cabal: Make token recognition case-insensitive.
...
* guix/import/cabal.scm (make-rx-matcher): Add optional parameter FLAG.
(is-property, is-flag, is-src-repo, is-exec, is-test-suite, is-benchmark,
is-lib, is-else, is-if): Make test case-insensitive.
2015-07-08 10:53:05 +02:00
7f74a931dd
import: Add 'elpa' importer.
...
* guix/import/elpa.scm: New file.
* guix/scripts/import.scm: Add "elpa" to 'importers'.
* guix/scripts/import/elpa.scm: New file.
* Makefile.am (MODULES): Add 'guix/import/elpa.scm' and
'guix/scripts/import/elpa.scm'.
(SCM_TESTS): Add 'tests/elpa.scm'.
* doc/guix.texi (Invoking guix import): Document it.
* tests/elpa.scm: New file.
* po/guix/POTFILES.in: Add 'guix/scripts/import/elpa.scm'.
2015-07-08 10:53:05 +02:00
ff986890ec
import: pypi: Detect inputs.
...
* guix/import/pypi.scm (python->package-name, maybe-inputs, compute-inputs,
guess-requirements): New procedures.
* guix/import/pypi.scm (guix-hash-url): Now takes a filename instead of an
URL as input.
* guix/import/pypi.scm (make-pypi-sexp): Now tries to generate the inputs
automagically.
* tests/pypi.scm: Update the test.
2015-06-24 22:47:59 +02:00
a415474873
import: hackage: Refactor parsing code and add new options.
...
* guix/import/cabal.scm: New file.
* guix/import/hackage.scm: Update to use the new Cabal parsing module.
* tests/hackage.scm: Update tests.
* guix/scripts/import/hackage.scm: Add new '--cabal-environment' and '--stdin'
options.
* doc/guix.texi: ... and document them.
* Makefile.am (MODULES): Add 'guix/import/cabal.scm',
'guix/import/hackage.scm' and 'guix/scripts/import/hackage.scm'.
(SCM_TESTS): Add 'tests/hackage.scm'.
2015-06-09 09:48:38 +02:00
47945cf353
import: cpan: Fix license string for Artistic license.
...
* guix/import/cpan.scm (string->license): Remove extraneous "_0"
suffix for Artistics licenses.
2015-04-19 19:48:52 -05:00
b29455cfe7
import: Add hackage importer.
...
* guix/import/hackage.scm: New file.
* tests/hackage.scm: New file.
2015-04-08 17:31:11 +02:00
431b28d9dc
import: cpan: Change %corelist into a promise.
...
Fixes compilation failures in 'guix pull'.
* guix/import/cpan.scm (%corelist): Change it to a promise by wrapping it with
'delay'.
(cpan-module->sexp): Adapt uses of %corelist by wrapping with 'force'.
2015-02-20 16:28:05 -05:00
e92a4ad928
import: cpan: Use cpan mirror url.
...
* guix/import/cpan.scm (cpan-module->sexp)[source-url]: Substitute cpan mirror
url.
2015-02-18 23:53:46 -06:00
a0c2c4b45b
import: cpan: Sort inputs.
...
* guix/import/cpan.scm (cpan-module->sexp)[convert-inputs]: Sort returned list
of inputs.
2015-02-18 23:53:46 -06:00
2491d58962
import: cpan: Adjust licenses.
...
* guix/import/cpan.scm (string->license): Add artistic2.0. Use
'(package-license perl) for "perl_5" as is our convention.
2015-02-18 23:53:46 -06:00
66392e475d
import: cpan: Use corelist to filter dependencies.
...
* guix/import/cpan.scm (%corelist): New variable.
(module->dist-name, core-module?): New procedures.
(cpan-module->sexp)[convert-inputs]: Use them. Include "test" dependencies
in converted inputs.
* doc/guix.texi (Invoking guix import)[cpan]: Mention corelist filtering.
2015-02-18 23:53:46 -06:00
d45dc6da5c
import: Add CPAN importer.
...
* guix/import/cpan.scm, guix/scripts/import/cpan.scm, tests/cpan.scm:
New files.
* Makefile.am (MODULE)[HAVE_GUILE_JSON]: Add them.
* guix/scripts/import.scm (importers): Add cpan.
* doc/guix.texi (Requirements): Mention `guix import cpan` as a user
of guile-json.
(Invoking guix import): Document new `guix import cpan` command.
2015-01-09 10:38:26 -06:00
1ff2619bc1
import: Factorize utility functions.
...
* guix/import/pypi.scm (hash-table->alist, flatten, assoc-ref*,
url-fetch, json-fetch): Pull procedures from here into...
* guix/import/utils.scm: Here and...
* guix/import/json.scm: Here. New file.
* Makefile.am (MODULE)[HAVE_GUILE_JSON]: Add it.
* guix/import/gnu.scm (file-sha256): Move from here to...
* guix/hash.scm: Here.
* tests/pypi.scm (pypi->guix-package): Update mock module reference.
2015-01-09 10:33:24 -06:00
c6cb82f5d5
import: gnu: Propagate the key-download argument.
...
* guix/import/gnu.scm (gnu->guix-package): Pass the key-download
argument on to gnu-package->sexp.
2015-01-09 10:33:24 -06:00
2cdda52b1a
import: gnu: Write the hash in nix-base32 format.
...
* guix/import/gnu.scm (gnu-package->sexp): Use
'bytevector->nix-base32-string', not 'bytevector->base32-string'.
2014-11-25 18:01:59 +01:00
7047133f07
import: Add GNU importer.
...
Suggested by Karl Berry <karl@gnu.org>
and Andreas Enge <andreas@enge.fr>.
* guix/import/gnu.scm, guix/scripts/import/gnu.scm: New files.
* Makefile.am (MODULES): Add them.
* guix/scripts/import.scm (importers): Add "gnu".
* guix/gnu-maintenance.scm (gnu-release-archive-types): New procedure.
(download-tarball): Export.
2014-11-11 15:31:35 +01:00
467a3c93db
import: pypi: Gracefully handle non-existent packages.
...
Fixes <http://bugs.gnu.org/18831 >.
Reported by Ian Denhardt <ian@zenhack.net>.
* guix/import/pypi.scm (url-fetch, json-fetch, pypi-fetch): Augment
docstring to mention #f on failure.
(pypi->guix-package): Likewise, and actually return #f on failure.
* guix/scripts/import/pypi.scm (guix-import-pypi): Call 'leave' when
'pypi->guix-package' returns #f.
2014-11-05 17:56:39 +01:00
7dbe096c63
import: snix: Handle license attributes.
...
* guix/import/snix.scm (snix-derivation->guix-package)[license-variable]:
Move to...
(license-variable): ... here. Handle license attributes.
2014-10-29 14:03:46 +01:00
68b18aae6a
guix import pypi: Fix a typo in a docstring.
...
* guix/import/pypi.scm (snake-case): Fix documentation.
2014-10-22 02:47:29 +02:00
a5ffa812b8
guix import pypi: do not add "python-" to a package name if it's already there.
...
* guix/import/pypi.scm (make-pypi-sexp): test whether the package name starts
with "python-" before modifying it.
2014-10-22 02:47:29 +02:00
cf690129b4
guix import pypi: add the Apache License 2.0
...
* guix/import/pypi.scm (string->license): add ASL2.0.
2014-10-22 02:47:29 +02:00
1b3e968512
import: Add PyPI importer.
...
* guix/snix.scm: Delete.
* guix/import/snix.scm: New file.
* guix/import/pypi.scm: New file.
* guix/import/utils.scm: New file.
* guix/scripts/import/nix.scm: New file.
* guix/scripts/import/pypi.scm: New file.
* tests/pypi.scm: New file.
* tests/snix.scm: Import (guix import snix) module.
* guix/scripts/import.scm (%default-options, %options): Delete.
(%standard-import-options, importers): New variables.
(show-help): List importers.
(guix-import): Factor out Nix-specific logic. Delegate to correct importer
based upon first argument.
* configure.ac (HAVE_GUILE_JSON): New conditional.
* Makefile.am (MODULES): Add new files and remove 'guix/snix.scm'.
(SCM_TESTS): Add 'tests/pypi.scm' if guile-json is installed.
2014-09-29 19:30:28 -04:00
Ricardo Wurmus