561965941c
gnu: Add libxml++.
...
* gnu/packages/gnome.scm (libxml++): New variable.
2015-11-20 20:23:03 +01:00
9cf5245497
gnu: slepc: Update to 3.6.2.
...
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
[arguments]: Append "/lib" to arpack configure flag. Use 'inputs'
rather than '%build-inputs' in 'configure phase.
2015-11-20 11:58:40 -06:00
32187d99bb
gnu: petsc: Update to 3.6.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
2015-11-20 11:58:40 -06:00
c69fa4380a
gnu: mumps: Update to 5.0.1.
...
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
2015-11-20 11:58:40 -06:00
ac356fd6ab
gnu: openmpi: Update to 1.10.1.
...
* gnu/packages/mpi.scm (openmpi): Update to 1.10.1.
[arguments]: Remove now-unsupported configure flags. Add
--enable-builtin-atomics. Remove development-oriented
--enable-debug.
2015-11-20 11:58:40 -06:00
2f5b6a1f18
gnu: hwloc: Update to 1.11.1.
...
* gnu/packages/mpi.scm (hwloc): Update to 1.11.1.
[source]: Remove patch.
* gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 11:58:40 -06:00
0297966495
gnu: guitarix: Update to 0.34.0.
...
* gnu/packages/audio.scm (guitarix): Update to 0.34.0.
[source]: Remove patch.
[inputs]: Add webkitgtk/gtk+-2.
* gnu/packages/patches/guitarix-c++11: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-11-20 18:19:30 +01:00
3307c7877e
gnu: Add emulation-station.
...
* gnu/packages/games.scm (emulation-station): New variable.
2015-11-20 09:27:15 -05:00
b49c5a58dc
gnu: preseq: Update to 2.0.
...
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
file.
* gnu-system.am (dist_patch_DATA): Remove them.
2015-11-20 15:22:06 +01:00
c6a24d6e92
gnu: Add smithlab-cpp.
...
* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
2015-11-20 15:22:06 +01:00
3d51ec919e
gnu: edirect: Update home page.
...
* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
slash to home page.
2015-11-20 15:21:24 +01:00
c52a382c4a
gnu: sra-tools: Update to 2.5.4.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
9e5ef614aa
gnu: ncbi-vdb: Update to 2.5.4.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
2015-11-20 15:21:24 +01:00
614a8977cb
gnu: ngs-java: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
2015-11-20 15:21:24 +01:00
d6a1cd7cae
gnu: ngs-sdk: Update to 1.2.2.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
2015-11-20 15:21:24 +01:00
2c84ba7e11
gnu: Add ruby-net-ssh.
...
* gnu/packages/ruby.scm (ruby-net-ssh): New variable.
2015-11-20 15:21:24 +01:00
4f2a52aeb5
gnu: Add ruby-mocha.
...
* gnu/packages/ruby.scm (ruby-mocha): New variable.
2015-11-20 15:21:24 +01:00
d93062fd5c
gnu: Add ruby-redcarpet.
...
* gnu/packages/ruby.scm (ruby-redcarpet): New variable.
2015-11-20 15:21:24 +01:00
97aee8d3eb
gnu: Add ruby-introspection.
...
* gnu/packages/ruby.scm (ruby-introspection): New variable.
2015-11-20 15:21:24 +01:00
4016ba3fd0
gnu: Add ruby-instantiator.
...
* gnu/packages/ruby.scm (ruby-instantiator): New variable.
2015-11-20 15:21:24 +01:00
21f7b7bd80
gnu: Add ruby-blankslate.
...
* gnu/packages/ruby.scm (ruby-blankslate): New variable.
2015-11-20 15:21:24 +01:00
25d6d49b3e
gnu: Add ruby-metaclass.
...
* gnu/packages/ruby.scm (ruby-metaclass): New variable.
2015-11-20 15:21:24 +01:00
3383f5bdab
gnu: Add ruby-test-unit.
...
* gnu/packages/ruby.scm (ruby-test-unit): New variable.
2015-11-20 15:21:24 +01:00
cc5aeb8c7d
gnu: Add ruby-packnga.
...
* gnu/packages/ruby.scm (ruby-packnga): New variable.
2015-11-20 15:21:24 +01:00
c1f52261e2
gnu: Add ruby-gettext.
...
* gnu/packages/ruby.scm (ruby-gettext): New variable.
2015-11-20 15:21:24 +01:00
e2333ea391
gnu: Add ruby-text.
...
* gnu/packages/ruby.scm (ruby-text): New variable.
2015-11-20 15:21:24 +01:00
347eb21e1d
gnu: Add ruby-locale.
...
* gnu/packages/ruby.scm (ruby-locale): New variable.
2015-11-20 15:21:24 +01:00
f88bacaf6f
gnu: Add ruby-power-assert.
...
* gnu/packages/ruby.scm (ruby-power-assert): New variable.
2015-11-20 15:21:24 +01:00
9641a89957
gnu: bless: Build only for x86_64.
...
* gnu/packages/bioinformatics.scm (bless): Add supported-systems field.
2015-11-20 11:32:32 +01:00
0536727efe
gnu: htseq: Propagate numpy.
...
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Move python2-numpy
from here ...
[propagated-inputs]: ... to here.
2015-11-20 11:32:32 +01:00
dffdef0f0f
gnu: ant: Update to 1.9.6.
...
* gnu/packages/java.scm (ant): Update to 1.9.6.
2015-11-20 11:32:32 +01:00
b2a72238b9
gnu: guix: Update development snapshot to 5c36edc.
...
* gnu/packages/package-management.scm (guix-devel): Update to 5c36edc
2015-11-19 22:33:01 +01:00
bc8bf605fc
gnu: jack-2: Fix jack_control script.
...
* gnu/packages/audio.scm (jack-2)[inputs]: Add python2-dbus.
[arguments]: Use python-2 and add build phase to wrap jack_control
Python script.
2015-11-19 16:10:52 +01:00
c3c61a781c
gnu: ghc-unordered-containers: Enable tests.
...
* gnu/packages/haskell.scm (ghc-unordered-containers)
[arguments]: Remove.
[inputs]: Add ghc-chasingbottoms, ghc-test-framework,
ghc-test-framework-hunit, and ghc-test-framework-quickcheck2.
2015-11-19 03:13:20 -06:00
4eca62be49
gnu: Add ghc-chasingbottoms.
...
* gnu/packages/haskell.scm (ghc-chasingbottoms): New variable.
2015-11-19 03:13:20 -06:00
19206f5eb8
gnu: ghc-attoparsec: Enable tests.
...
* gnu/packages/haskell.scm (ghc-attoparsec)[arguments]: Remove.
[inputs]: Add ghc-quickcheck, ghc-quickcheck-unicode,
ghc-test-framework, and ghc-test-framework-quickcheck2.
2015-11-19 03:13:19 -06:00
ab715ec9ae
gnu: Add ghc-test-framework-quickcheck2.
...
* gnu/packages/haskell.scm (ghc-test-framework-quickcheck2): New
variable.
2015-11-19 03:13:19 -06:00
e1c1b71c38
gnu: ghc-async: Enable tests.
...
* gnu/packages/haskell.scm (ghc-async)[arguments]: Remove.
[inputs]: Add ghc-hunit, ghc-test-framework, and
ghc-test-framework-hunit.
2015-11-19 03:13:19 -06:00
0eeaa169a0
gnu: ghc-regex-posix: Propagate inputs.
...
* gnu/packages/haskell.scm (ghc-regex-posix): Propagate ghc-regex-base
input.
2015-11-19 03:13:19 -06:00
1fe25c573a
gnu: Add ghc-test-framework-hunit.
...
* gnu/packages/haskell.scm (ghc-test-framework-hunit): New variable.
2015-11-19 03:13:19 -06:00
09655c676b
gnu: Add ghc-test-framework.
...
* gnu/packages/haskell.scm (ghc-test-framework): New variable.
2015-11-19 03:13:19 -06:00
1472ba2546
gnu: Add ghc-libxml.
...
* gnu/packages/haskell.scm (ghc-libxml): New variable.
2015-11-19 03:13:19 -06:00
ccd7b30872
gnu: Add ghc-hostname.
...
* gnu/packages/haskell.scm (ghc-hostname): New variable.
2015-11-19 03:13:19 -06:00
d2a5210844
gnu: tilda: Update to 1.3.0.
...
* gnu/packages/terminals.scm (tilda): Update to 1.3.0.
[inputs]: Switch vte from 0.36 to 0.40, remove zip.
2015-11-19 14:45:45 +02:00
e30be98653
gnu: youtube-dl: Update to 2015.11.18.
...
* gnu/packages/video.scm (youtube-dl): Update to 2015.11.18.
2015-11-19 09:48:41 +02:00
3470fe002c
gnu: libsndfile: Add fixes for CVE-2014-9496 and CVE-2015-7805.
...
* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
gnu/packages/patches/libsndfile-CVE-2015-7805.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Add patches.
2015-11-18 17:47:40 -05:00
b4a88dc25f
gnu: libxslt: Add fix for CVE-2015-7995.
...
* gnu/packages/patches/libxslt-CVE-2015-7995.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/xml.scm (libxslt)[source]: Add patch.
2015-11-18 17:47:40 -05:00
ee6bb0cc76
gnu: libxml2: Add fixes for CVE-2015-{1819,7941,7942,8035} and other bugs.
...
* gnu/packages/patches/libxml2-CVE-2015-1819.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7941-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt1.patch,
gnu/packages/patches/libxml2-CVE-2015-7942-pt2.patch,
gnu/packages/patches/libxml2-CVE-2015-8035.patch,
gnu/packages/patches/libxml2-bug-737840.patch,
gnu/packages/patches/libxml2-bug-738805.patch,
gnu/packages/patches/libxml2-bug-746048.patch,
gnu/packages/patches/libxml2-bug-747437.patch,
gnu/packages/patches/libxml2-bug-751603.patch,
gnu/packages/patches/libxml2-bug-751631.patch,
gnu/packages/patches/libxml2-bug-754946.patch,
gnu/packages/patches/libxml2-bug-754947.patch,
gnu/packages/patches/libxml2-bug-755857.patch,
gnu/packages/patches/libxml2-fix-catalog-corruption.patch,
gnu/packages/patches/libxml2-id-attrs-in-xmlSetTreeDoc.patch,
gnu/packages/patches/libxml2-node-sort-order-pt1.patch,
gnu/packages/patches/libxml2-node-sort-order-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[source]: Add patches.
2015-11-18 17:47:40 -05:00
328a14e869
gnu: libpng: Update to 1.5.24 [fixes CVE-2015-8126].
...
* gnu/packages/image.scm (libpng): Update to 1.5.24.
2015-11-18 17:47:40 -05:00
21ef9843e4
Revert "gnu: libpng: Use 1.5.24 as a replacement [fixes CVE-2015-8126]."
...
This reverts commit 1b076e630f
2015-11-18 17:47:17 -05:00
7be4a4b0ae
gnu: weechat: Fix patching of assignments to 'python2_bin'.
...
Fixes a regression introduced in a9346fa
2015-11-18 18:01:50 +01:00
b567abcf1a
gnu: weechat: Encode as UTF-8.
...
* gnu/packages/weechat.scm: Reencode as UTF-8.
2015-11-18 18:01:30 +01:00
a9346faee6
gnu: weechat: Record the absolute file name of 'python'.
...
Fixes <http://bugs.gnu.org/21879 >.
Reported by Luis Felipe López Acevedo <felipe.lopez@openmailbox.org>.
* gnu/packages/weechat.scm (weechat)[arguments]: Add
'set-python-file-name' phase.
2015-11-18 17:47:09 +01:00
e33cf9a69a
gnu: weechat: Use 'modify-phases'.
...
* gnu/packages/weechat.scm (weechat)[arguments]: Use 'modify-phases'.
Remove 'fix-file' phase.
2015-11-18 17:47:09 +01:00
f4a4a71885
gnu: python-tornado: Use the preferred home-page.
...
* gnu/packages/python.scm (python-tornado)[home-page]: Use the preferred
one.
2015-11-18 09:45:47 -05:00
7f51b663b0
gnu: python-cryptography: Update to 1.0.2.
...
* gnu/packages/python.scm (python-cryptography): Update to 1.0.2.
2015-11-18 09:30:01 -05:00
3698a77588
gnu: python-cryptography-vectors: Update to 1.0.2.
...
* gnu/packages/python.scm (python-cryptography-vectors): Update to 1.0.2.
2015-11-18 09:30:01 -05:00
f836fb8d0c
gnu: zynaddsubfx: Update to 2.5.2.
...
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.2.
2015-11-18 14:07:14 +01:00
f7d17ac756
gnu: Add python-pystache.
...
* gnu/packages/python.scm (python-pystache, python2-pystache): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-11-18 12:21:45 +01:00
49846012f0
Revert "gnu: wget: Update to 1.17."
...
This reverts commit 4ca0234069
2015-11-18 08:36:27 +02:00
4d62a9d304
gnu: Add network-manager-applet.
...
* gnu/packages/gnome.scm (network-manager-applet): New variable.
2015-11-18 09:16:31 +08:00
ba5dd1055f
gnu: Add network-manager.
...
* gnu/packages/gnome.scm (%network-manager-glib-duplicate-test-patch)
(network-manager): New variables.
2015-11-18 09:16:31 +08:00
b494d198cd
gnu: youtube-dl: Update to 2015.11.15.
...
* gnu/packages/video.scm (youtube-dl): Update to 2015.11.15.
2015-11-17 21:32:58 +02:00
3279b7ec47
gnu: Add Scribus.
...
* gnu/packages/scribus.scm: New file
* gnu/packages/patches/scribus-qobject.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES, dist_patch_DATA): Add them.
2015-11-17 08:43:32 +01:00
ac838d0f8e
gnu: Add GraphicsMagick.
...
* gnu/packages/imagemagick.scm (graphicsmagick): New variable.
2015-11-17 08:43:32 +01:00
bf50f7b587
gnu: Add prefix to license imports in (gnu packages imagemagick).
...
* gnu/packages/imagemagick.scm: Import (guix licenses) with prefix
"license:".
2015-11-17 08:43:32 +01:00
ae916e02cb
gnu: Add ppp.
...
* gnu/packages/samba.scm (ppp): New variable.
2015-11-17 10:01:00 +08:00
4ca0234069
gnu: wget: Update to 1.17.
...
* gnu/packages/wget.scm (wget): Update to 1.17.
2015-11-17 00:46:21 +02:00
9832ecf09a
gnu: dovecot: Update to 2.2.19.
...
* gnu/packages/mail.scm (dovecot): Update to 2.2.19.
2015-11-16 13:57:09 -05:00
d3a33fe28d
gnu: eigen: Run 'ctest' in verbose mode.
...
* gnu/packages/algebra.scm (eigen)[arguments]: Add "-V" in
'EIGEN_CTEST_ARGS'.
2015-11-16 16:44:39 +01:00
354f4fe292
gnu: eigen: Use 'modify-phases'.
...
* gnu/packages/algebra.scm (eigen)[arguments]: Use 'modify-phases'
instead of 'alist-cons-before'.
2015-11-16 16:44:39 +01:00
a4eb83b709
gnu: eigen: Fix 'Cflags' value in 'eigen3.pc'.
...
* gnu/packages/algebra.scm (eigen)[source]: Augment snippet to address
<http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114 >.
2015-11-16 16:44:39 +01:00
83a4a70b50
gnu: Add love.
...
* gnu/packages/game-development.scm (love): New variable.
2015-11-16 08:47:23 -05:00
3aab2c839f
gnu: Add devil.
...
* gnu/packages/image.scm (devil): New variable.
* gnu/packages/patches/devil-fix-libpng.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
2015-11-16 08:47:23 -05:00
6a7e1a180b
gnu: Add tilda.
...
* gnu/packages/terminals.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2015-11-16 15:22:37 +02:00
2776d72c7c
gnu: vte: Provide 0.36.5.
...
* gnu/packages/gnome.scm (vte): Add version 0.36.5.
2015-11-16 15:22:37 +02:00
782770d1c2
gnu: mpv: Remove lua configure hack.
...
* gnu/packages/video.scm (mpv)[arguments]: Remove obsolete code that
helped configure find lua.
2015-11-16 15:18:30 +02:00
54567afa13
gnu: mpv: Update to 0.13.0.
...
* gnu/packages/video.scm (mpv): Update to 0.13.0.
2015-11-16 15:04:34 +02:00
d6e21589af
gnu: Add r-devtools.
...
* gnu/packages/statistics.scm (r-devtools): New variable.
2015-11-16 11:09:49 +01:00
81a4228b18
gnu: Add r-rstudioapi.
...
* gnu/packages/statistics.scm (r-rstudioapi): New variable.
2015-11-16 11:09:49 +01:00
035711f1f5
gnu: Add r-git2r.
...
* gnu/packages/statistics.scm (r-git2r): New variable.
2015-11-16 11:09:49 +01:00
681e03c12d
gnu: Add r-httr.
...
* gnu/packages/statistics.scm (r-httr): New variable.
2015-11-16 11:09:49 +01:00
167c988263
gnu: Add r-roxygen2.
...
* gnu/packages/statistics.scm (r-roxygen2): New variable.
2015-11-16 11:09:49 +01:00
13d083af59
gnu: Add r-brew.
...
* gnu/packages/statistics.scm (r-brew): New variable.
2015-11-16 11:09:49 +01:00
1a77eccd0e
gnu: Add r-whisker.
...
* gnu/packages/statistics.scm (r-whisker): New variable.
2015-11-16 11:09:49 +01:00
6140747f06
gnu: Add r-rversions.
...
* gnu/packages/statistics.scm (r-rversions): New variable.
2015-11-16 11:09:49 +01:00
67a167fdf7
gnu: Add r-xml2.
...
* gnu/packages/statistics.scm (r-xml2): New variable.
2015-11-16 11:09:49 +01:00
5f4621de1f
gnu: Add r-curl.
...
* gnu/packages/web.scm (r-curl): New variable.
2015-11-16 11:09:49 +01:00
fcc43c1f7b
gnu: images: Add jpegoptim 1.4.3
...
* gnu/packages/images.scm (jpegoptim): New variable jpegoptim
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-11-16 10:03:49 +01:00
1b076e630f
gnu: libpng: Use 1.5.24 as a replacement [fixes CVE-2015-8126].
...
Reported by Leo Famulari <leo@famulari.name>.
* gnu/packages/image.scm (libpng-urls): New procedure.
(libpng)[source]: Use it.
[replacement]: New field.
(libpng-1.5.24): New variable.
2015-11-16 09:51:44 +01:00
b6bbebbcab
gnu: gnucash: Update to 2.6.9.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.9.
[home-page]: Update.
2015-11-16 04:15:02 +01:00
000e36f2ee
gnu: pari-gp: Update to 2.7.5.
...
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.5.
2015-11-16 03:51:34 +01:00
5de56b611c
gnu: enlightenment: Update to 0.19.13.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.19.13.
2015-11-15 11:03:03 +02:00
90b5741869
gnu: evas-generic-loaders: Update to 1.16.0.
...
* gnu/packages/enlightenment.scm (evas-generic-loaders): Update to
1.16.0.
2015-11-15 10:25:16 +02:00
96479cf10d
gnu: emotion-generic-players: Update to 1.16.0.
...
* gnu/packages/enlightenment.scm (emotion-generic-players): Update to
1.16.0.
2015-11-15 10:22:11 +02:00
5fbf590a90
gnu: elementary: Update to 1.16.0.
...
* gnu/packages/enlightenment.scm (elementary): Update to 1.16.0.
2015-11-15 09:46:50 +02:00
1c8a70a350
gnu: efl: Update to 1.16.0.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.16.0.
2015-11-15 09:27:46 +02:00
19a696ed72
gnu: youtube-dl: Update to 2015.11.13.
...
* gnu/packages/video.scm (youtube-dl): Update to 2015.11.13.
2015-11-15 00:07:38 +02:00
511495fb24
gnu: sudo: Build sequentially.
...
Possibly fixes <http://bugs.gnu.org/21918 >.
* gnu/packages/admin.scm (sudo)[arguments]: Add #:parallel-build? #f.
2015-11-14 16:50:21 +01:00
5649c8cd89
gnu: Add guile-sly.
...
* gnu/packages/guile.scm (guile-sly): New variable.
2015-11-14 07:55:34 -05:00
Ricardo Wurmus