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30817 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice c3a17ab7af
gnu: perl-sub-quote: Update to 2.005001. 
* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
 2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 9b8e38ae3d
gnu: perl-capture-tiny: Update to 0.48. 
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48.
 2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 085a95a71c
gnu: perl-b-hooks-endofscope: Update to 0.24. 
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 9960ed6291
gnu: perl-file-sharedir-install: Update to 0.13. 
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice a7999e2d63
gnu: perl-test-notabs: Update to 2.02. 
* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 93a554a0d9
gnu: python-simplejson: Update to 3.14.0. 
* gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
 2018-04-27 02:56:40 +02:00
Tobias Geerinckx-Rice e3e74e4022
gnu: python2-ndg-httpsclient: Fix build. 
This might be a follow-up to a39cc01632
from 2016, which would be neat.

* gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use
SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
 2018-04-27 02:56:17 +02:00
Christopher Lemmer Webber ae9877fed3
gnu: paperkey: Update to 1.5. 
* gnu/packages/gnupg.scm (paperkey): Update to 1.5.
 2018-04-26 19:11:27 -05:00
Roel Janssen b43a9eb361
gnu: bedops: Update to 2.4.33. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33.
 2018-04-27 01:11:57 +02:00
Roel Janssen c829c5ea85
gnu: samtools: Update to 1.8. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.8.
 2018-04-27 01:11:47 +02:00
Roel Janssen cbd9f91c32
gnu: bcftools: Update to 1.8. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8.
* gnu/local.mk: Remove patch.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
 2018-04-27 01:11:42 +02:00
Roel Janssen 8df0267ad4
gnu: htslib: Update to 1.8. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.8.
 2018-04-27 01:11:24 +02:00
Leo Famulari 16ef3368da
gnu: PackageKit: Update to 1.1.10 [fixes CVE-2018-1106]. 
* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.10.
 2018-04-26 16:10:54 -04:00
Alex Kost 1f22a544c2
gnu: emacs-magit-popup: Update to 2.12.3. 
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.3.
 2018-04-26 23:03:51 +03:00
Alex Kost cec021d16a
gnu: emacs-with-editor: Update to 2.7.2. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.7.2.
 2018-04-26 23:03:51 +03:00
Alex Kost e9c3a780d1
gnu: geiser: Update to 0.10. 
* gnu/packages/emacs.scm (geiser): Update to 0.10.
 2018-04-26 23:03:51 +03:00
Leo Famulari 205044b9c1
gnu: python-josepy: Update to 1.1.0. 
* gnu/packages/python-crypto.scm (python-josepy, python2-josepy): Update
to 1.1.0.
 2018-04-26 15:41:40 -04:00
Tobias Geerinckx-Rice d1f1a7a0b1
gnu: python-qrcode: Update to 6.0. 
* gnu/packages/python.scm (python-qrcode): Update to 6.0.
 2018-04-26 21:09:00 +02:00
Tobias Geerinckx-Rice c10176649f
gnu: python2-pathlib2: Update to 2.3.2. 
* gnu/packages/python.scm (python2-pathlib2): Update to 2.3.2.
 2018-04-26 21:09:00 +02:00
Tobias Geerinckx-Rice 5cf24cde18
gnu: python-rst.linker: Update to 1.9. 
* gnu/packages/python.scm (python-rst.linker): Update to 1.9.
 2018-04-26 21:09:00 +02:00
Tobias Geerinckx-Rice 9052324d72
gnu: python-sphinx@1.6: Update to 1.6.4. 
* gnu/packages/python.scm (python-sphinx-1.6): Update to 1.6.4.
 2018-04-26 21:09:00 +02:00
Tobias Geerinckx-Rice ebf09e77dc
gnu: python-ndg-httpsclient: Update to 0.5.0. 
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.5.0.
 2018-04-26 21:08:59 +02:00
Tobias Geerinckx-Rice 9616e86aa0
gnu: r-ztable: Update to 0.1.8. 
* gnu/packages/statistics.scm (r-ztable): Update to 0.1.8.
 2018-04-26 21:08:59 +02:00
Tobias Geerinckx-Rice 9b4d3c1d02
gnu: r-sn: Update to 1.5-2. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-2.
 2018-04-26 21:08:59 +02:00
Tobias Geerinckx-Rice 442ce03acc
gnu: r-sourcetools: Update to 0.1.7. 
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.7.
 2018-04-26 21:08:59 +02:00
Tobias Geerinckx-Rice 5e517e9b98
gnu: python-html5-parser: Update to 0.4.5. 
* gnu/packages/python-web.scm (python-html5-parser): Update to 0.4.5.
 2018-04-26 21:08:58 +02:00
Tobias Geerinckx-Rice a4d8b386ac
gnu: mg: Update to 20180408. 
* gnu/packages/text-editors.scm (mg): Update to 20180408.
[source]: Switch from discontinued proper releases to a git tag.
 2018-04-26 21:08:58 +02:00
Tobias Geerinckx-Rice 11edb2474c
gnu: mg: Find ncurses through pkg-config. 
* gnu/packages/text-editors.scm (mg)[arguments]: Remove explicit
‘CURSES_LIBS=-lncurses’ setting from #:make-flags.
 2018-04-26 21:08:58 +02:00
Tobias Geerinckx-Rice 1cc3e26b6a
gnu: fio: Use INVOKE. 
* gnu/packages/benchmark.scm (fio)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with explicit #t.
 2018-04-26 21:08:58 +02:00
Tobias Geerinckx-Rice d2caedf08d
gnu: ghostwriter: Update to 1.6.2. 
* gnu/packages/text-editors.scm (ghostwriter): Update to 1.6.2.
 2018-04-26 21:08:58 +02:00
Tobias Geerinckx-Rice 3b8064734e
gnu: youtube-viewer: Update to 3.3.4. 
* gnu/packages/video.scm (youtube-viewer): Update to 3.3.4.
 2018-04-26 21:08:57 +02:00
Tobias Geerinckx-Rice a3cbd75bb3
gnu: openvpn: Update to 2.4.6. 
* gnu/packages/vpn.scm (openvpn): Update to 2.4.6.
 2018-04-26 21:08:57 +02:00
Tobias Geerinckx-Rice b6617a1ed8
gnu: perl-text-glob: Update to 0.11. 
* gnu/packages/perl.scm (perl-text-glob): Update to 0.11.
 2018-04-26 21:08:57 +02:00
Tobias Geerinckx-Rice 4e7ec8c06e
gnu: perl-task-weaken: Update to 1.06. 
* gnu/packages/perl.scm (perl-task-weaken): Update to 1.06.
 2018-04-26 21:08:57 +02:00
Tobias Geerinckx-Rice 4f1f1592a6
gnu: perl-module-find: Update to 0.13. 
* gnu/packages/perl.scm (perl-module-find): Update to 0.13.
 2018-04-26 21:08:56 +02:00
Tobias Geerinckx-Rice dbfbe2b0c8
gnu: perl-mime-types: Update to 2.17. 
* gnu/packages/perl.scm (perl-mime-types): Update to 2.17.
 2018-04-26 21:08:56 +02:00
Tobias Geerinckx-Rice 4844ccb2fe
gnu: perl-file-sharedir-install: Update to 0.12. 
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.12.
 2018-04-26 21:08:56 +02:00
Tobias Geerinckx-Rice 39a915c2bf
gnu: perl-devel-overloadinfo: Update to 0.005. 
* gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.005.
 2018-04-26 21:08:56 +02:00
Tobias Geerinckx-Rice ff8b52bad9
gnu: perl-class-inspector: Update to 1.32. 
* gnu/packages/perl.scm (perl-class-inspector): Update to 1.32.
 2018-04-26 21:08:55 +02:00
Tobias Geerinckx-Rice ea1db49a89
gnu: perl-file-find-rule: Update to 0.34. 
* gnu/packages/perl.scm (perl-file-find-rule): Update to 0.34.
 2018-04-26 21:08:55 +02:00
Tobias Geerinckx-Rice 8c8771c375
gnu: perl-error: Update to 0.17025. 
* gnu/packages/perl-.scm (perl-error): Update to 0.17025.
 2018-04-26 21:08:55 +02:00
Tobias Geerinckx-Rice 41b937cd5f
gnu: perl-test-simple: Update to 1.302136. 
* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302136.
 2018-04-26 21:08:55 +02:00
Tobias Geerinckx-Rice 8cb722028c
gnu: perl-test-output: Update to 1.031. 
* gnu/packages/perl-check.scm (perl-test-output): Update to 1.031.
 2018-04-26 21:08:54 +02:00
Tobias Geerinckx-Rice 23da2107f9
gnu: perl-test-differences: Update to 0.64. 
* gnu/packages/perl-check.scm (perl-test-differences): Update to 0.64.
 2018-04-26 21:08:54 +02:00
Tobias Geerinckx-Rice cb6fb537dd
gnu: perl-test-pod: Update to 1.52. 
* gnu/packages/perl-check.scm (perl-test-pod): Update to 1.52.
 2018-04-26 21:08:54 +02:00
Tobias Geerinckx-Rice 79a9dee62d
gnu: perl-test-base: Update to 0.89. 
* gnu/packages/perl-check.scm (perl-test-base): Update to 0.89.
 2018-04-26 21:08:54 +02:00
Leo Famulari 379848ed31
gnu: zsh: Update to 5.5.1. 
* gnu/packages/shells.scm (zsh): Update to 5.5.1.
[source]: Remove obsolete patches.
* gnu/packages/patches/zsh-CVE-2018-7548.patch,
gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-04-26 15:06:03 -04:00
Rouby Pierre-Antoine 2690b6ce7d
gnu: Add libpfm4. 
* gnu/packages/linux.scm (libpfm4): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-04-26 16:10:30 +02:00
Rouby Pierre-Antoine 25637b770e
gnu: Add psm2. 
* gnu/packages/linux.scm (psm2): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-04-26 16:10:30 +02:00
Marius Bakke 28cae33891
gnu: perl@5.26.2: Don't export variable. 
This prevents it from ending up in user profiles, which would fail due to
wrong search paths as reported in <https://bugs.gnu.org/31216#43>.

* gnu/packages/perl.scm (perl-5.26.2): Use DEFINE instead of DEFINE-PUBLIC.
 2018-04-26 12:52:45 +02:00