Commit Graph

32617 Commits (03439df66fc2699b22e5786b33324e5432cfe8cf)

Author SHA1 Message Date
Efraim Flashner 03439df66f
gnu: libgcrypt: Fix CVE-2018-0495.
* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
2018-06-14 11:06:48 +03:00
Clément Lassieur 85d79a79e4
gnu: Add python-dns-lexicon.
* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
2018-06-14 08:18:06 +02:00
Clément Lassieur b863b50d80
gnu: Add python-pynamecheap.
* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
2018-06-14 08:18:02 +02:00
Clément Lassieur f4adbe7405
gnu: Add python-tldextract.
* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
2018-06-14 08:17:59 +02:00
Clément Lassieur 0dc572380b
gnu: Add python-requests-file.
* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
2018-06-14 08:17:55 +02:00
Arun Isaac 40c1b61aac
gnu: Add tmate.
* gnu/packages/terminals.scm (tmate): New variable.
2018-06-14 11:20:31 +05:30
Tobias Geerinckx-Rice 0975ca3fd4
services: tor: Mark end of auto-generated configuration block.
* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
2018-06-14 05:21:35 +02:00
Tobias Geerinckx-Rice 0b5c16c07f
Fix typo in (gnu packages gtk) header.
* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
2018-06-14 04:30:50 +02:00
Tobias Geerinckx-Rice b262aba733
gnu: python-gnupg: Return #t from phase.
* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
2018-06-14 04:02:14 +02:00
Tobias Geerinckx-Rice ff76a1e9ca
gnu: python-gnupg: Update to 0.4.3.
* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
2018-06-14 04:01:21 +02:00
Tobias Geerinckx-Rice 2b78360138
gnu: sssd: Update to 1.16.2.
* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
2018-06-14 00:52:30 +02:00
Ludovic Courtès e2f8be0664
pull: Add '--list-generations'.
* guix/scripts/pull.scm (show-help, %options): Add '--list-generations'.
(display-profile-content, process-query): New procedures.
(guix-pull): Honor '--list-generations'.
2018-06-13 23:41:21 +02:00
Ricardo Wurmus 844cc1c8f3
gnu: pigx-scrnaseq: Update to 0.0.5.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
2018-06-13 22:30:55 +02:00
Nicolas Goaziou 4bf474b243
gnu: emacs-orgalist: Update to 1.8.
* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
2018-06-13 21:38:18 +02:00
Kei Kebreau 935cb931b5
gnu: emacspeak: Update to 48.0.
* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'.  In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
2018-06-13 14:44:13 -04:00
Julien Lepiller 8c655f31db
nls: Update 'fr' translation. 2018-06-13 18:50:41 +02:00
Ricardo Wurmus 6ccd88e8cb
gnu: r-factoextra: Fix syntax error.
* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
2018-06-13 16:42:29 +02:00
Ricardo Wurmus 13b8dcf589
gnu: r-seurat: Update to 2.3.2.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b2a339e19
gnu: r-s4vectors: Update to 0.18.3.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5b730eba3e
gnu: r-biocviews: Update to 1.48.1.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus c812f46817
gnu: r-rjson: Update to 0.2.20.
* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 242ffd6c80
gnu: r-zoo: Update to 1.8-2.
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 6221de1879
gnu: r-rmarkdown: Update to 1.10.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus d086829d39
gnu: r-highr: Update to 0.7.
* gnu/packages/statistics.scm (r-highr): Update to 0.7.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 26a53dd957
gnu: r-stringi: Update to 1.2.3.
* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 3399dc97fc
gnu: r-munsell: Update to 0.5.0.
* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0357db53c8
gnu: r-rgooglemaps: Update to 1.4.2.
* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1df9a0cf47
gnu: r-reticulate: Update to 1.8.
* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus fa7236f1b3
gnu: r-later: Update to 0.7.3.
* gnu/packages/cran.scm (r-later): Update to 0.7.3.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 36dc359186
gnu: r-radiant-data: Update to 0.9.5.
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 014818b691
gnu: r-cubature: Update to 1.3-13.
* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 8d2f8aeddf
gnu: r-extradistr: Update to 1.8.9.
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 1268a995da
gnu: r-statnet-common: Update to 4.1.2.
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 2bce7795c1
gnu: r-stringdist: Update to 0.9.5.1.
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus d0396c8ea1
gnu: r-rcpproll: Update to 0.3.0.
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus a151f1e60a
gnu: r-extremes: Update to 2.0-9.
* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus d87130cb2e
gnu: r-sp: Update to 1.3-1.
* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 5fa9be1118
gnu: r-getoptlong: Update to 0.1.7.
* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 7b60ab3df7
gnu: r-circlize: Update to 0.4.4.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 693b4d0ba5
gnu: r-globaloptions: Update to 0.1.0.
* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 846325a8d8
gnu: Add r-writexl.
* gnu/packages/cran.scm (r-writexl): New variable.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 546fc4aa55
gnu: Add r-hdf5r.
* gnu/packages/cran.scm (r-hdf5r): New variable.
2018-06-13 15:14:37 +02:00
Ricardo Wurmus 0c9868aa5b
gnu: Add r-nbclust.
* gnu/packages/cran.scm (r-nbclust): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus f22bfee945
gnu: Add r-factoextra.
* gnu/packages/cran.scm (r-factoextra): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus e83841a296
gnu: Add r-factominer.
* gnu/packages/cran.scm (r-factominer): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus cbf6017d83
gnu: Add r-flashclust.
* gnu/packages/cran.scm (r-flashclust): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus 141e43bd4e
gnu: Add r-ellipse.
* gnu/packages/cran.scm (r-ellipse): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5cbaaee83f
gnu: Add r-ggpubr.
* gnu/packages/cran.scm (r-ggpubr): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus 5219c5c585
gnu: Add r-ggsignif.
* gnu/packages/cran.scm (r-ggsignif): New variable.
2018-06-13 11:51:28 +02:00
Ricardo Wurmus 85df1a8631
gnu: Add r-ggsci.
* gnu/packages/cran.scm (r-ggsci): New variable.
2018-06-13 11:51:28 +02:00