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8282 Commits

Author SHA1 Message Date
Vicente Vera Parra 0661b4db2e gnu: Add r-pryr. 
* gnu/packages/statistics.scm (r-pryr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 1cf1cbb0ac gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 4f0e84845d gnu: Add r-microbenchmark. 
* gnu/packages/statistics.scm (r-microbenchmark): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 213656b95b gnu: Add r-knitr. 
* gnu/packages/statistics.scm (r-knitr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra ea3a80957a gnu: Add r-yaml. 
* gnu/packages/statistics.scm (r-yaml): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 3f8ac35330 gnu: Add r-markdown. 
* gnu/packages/statistics.scm (r-markdown): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra acbb40fa20 gnu: Add r-mime. 
* gnu/packages/statistics.scm (r-mime): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra ad3f005bdd gnu: Add r-highr. 
* gnu/packages/statistics.scm (r-highr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra c5bf3abe34 gnu: Add r-formatr. 
* gnu/packages/statistics.scm (r-formatr): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 256ccc926c gnu: Add r-evaluate. 
* gnu/packages/statistics.scm (r-evaluate): New variable.
 2015-09-21 10:48:26 +02:00
Vicente Vera Parra 675c9f447b gnu: Add r-bh. 
* gnu/packages/statistics.scm (r-bh): New variable.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus 9cda36227b gnu: Use cran-uri in source expressions. 
* gnu/packages/statistics.scm (r-colorspace, r-dichromat, r-digest,
  r-gtable, r-labeling, r-magrittr, r-munsell, r-rcpp, r-plyr, r-proto,
  r-rcolorbrewer, r-stringi, r-stringr, r-reshape2, r-scales, r-ggplot2,
  r-assertthat, r-lazyeval, r-dbi): Use cran-uri in source expressions.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus a52b625152 import: cran-sxml->sexp: Use cran-uri in package expression. 
* guix/import/cran.scm (cran-sxml->sexp): Use the cran-uri procedure in
  the generated package expression.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus 5546114e73 build: Add cran-uri procedure. 
* guix/build-system/r.scm (cran-uri): New procedure.
 2015-09-21 10:48:26 +02:00
Ricardo Wurmus fed5a6898b gnu: Add shotwell. 
* gnu/packages/gnome.scm (shotwell): New variable.
 2015-09-21 07:45:20 +02:00
Ricardo Wurmus b0f9c4b86c gnu: Add gexiv2. 
* gnu/packages/gnome.scm (gexiv2): New variable.
 2015-09-21 07:31:50 +02:00
Ricardo Wurmus af8f9f231e gnu: Add libgee. 
* gnu/packages/gnome.scm (libgee): New variable.
 2015-09-21 07:31:42 +02:00
Eric Bavier da494dad8e gnu: autogen: Update to 5.18.6. 
* gnu/packages/autogen.scm (autogen): Update to 5.18.6.
 2015-09-20 15:09:52 -05:00
Eric Bavier f210647da2 gnu: gnu-pw-mgr: Update to 1.5. 
* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.5.
 2015-09-20 15:09:51 -05:00
Ludovic Courtès 8fcac19975 Thank Petter. 2015-09-20 22:06:48 +02:00
Ludovic Courtès 07779d0add linux-initrd: Add LUKS/dm-crypt modules to the initrd. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.

Partly fixes <http://bugs.gnu.org/19190>.

* gnu/system/linux-initrd.scm (base-initrd)[linux-modules]: Add dm-crypt
  and xts.
 2015-09-20 22:05:50 +02:00
Ludovic Courtès cc0e575a94 linux-boot: Mount /dev as a devtmpfs from the start. 
Suggested by Petter <petter@mykolab.ch>
and Mark H Weaver <mhw@netris.org>.
Reported by Duncan Keall <duncan@duncankeall.com>.

Partly fixes <http://bugs.gnu.org/19190> by populating /dev/mapper
early enough.

* gnu/build/linux-boot.scm (mount-essential-file-systems): Mount /dev as
  a devtmpfs.
  (move-essential-file-systems): Add /dev.
  (mount-root-file-system): Mount /rw-root/dev as a devtmpfs instead of
  calling 'make-essential-device-nodes'.
  (boot-system): Remove call to 'make-essential-device-nodes'.
* gnu/system/file-systems.scm (%devtmpfs-file-system): Remove.
* doc/guix.texi (File Systems): Adjust accordingly.
 2015-09-20 22:05:36 +02:00
Ricardo Wurmus 7ee5db15bf gnu: openal: Use full path to audio backend libraries. 
* gnu/packages/audio.scm (openal)[arguments]: Add build phase to patch in the
  full paths to backend audio libraries.
 2015-09-20 13:43:38 +02:00
Ricardo Wurmus 594360f508 gnu: vpnc: Use https for source URL. 
* gnu/packages/vpn.scm (vpnc)[source]: Use https protocol for source URL.
 2015-09-20 11:37:43 +02:00
Ricardo Wurmus 127b04d741 gnu: lilypond: Update to 2.19.27. 
* gnu/packages/music.scm (lilypond): Update to 2.19.27.
  [inputs]: Add font-tex-gyre.
 2015-09-20 11:37:36 +02:00
Ricardo Wurmus 7d1b5022e9 gnu: sfml: Update to 2.3.2. 
* gnu/packages/game-development.scm (sfml): Update to 2.3.2.
  [native-inputs]: Remove.
 2015-09-20 10:08:26 +02:00
Cyril Roelandt d7af106987 gnu: Add python2-keyring. 
* gnu/packages/python.scm (python2-keyring): New variable.
 2015-09-20 04:42:15 +02:00
Cyril Roelandt 7261d9eb16 gnu: Add python2-pyflakes and fix python2-pyflakes-0.8.1. 
* gnu/packages/python.scm (python2-pyflakes): New variable.
* gnu/packages/python.scm (python2-pyflakes-0.8.1): Fix the definition.
 2015-09-20 04:41:51 +02:00
Cyril Roelandt 350ba0a32b gnu: Add python-prettytable 
* gnu/packages/python.scm (python-prettytable,
  python2-prettytable): New variables.
 2015-09-20 04:29:10 +02:00
Andreas Enge a5002ae77c gnu: Add R/qtl. 
* gnu/packages/bioinformatics.scm (r-qtl): New variable.

Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
 2015-09-20 00:32:45 +02:00
Andreas Enge e49b339608 gnu: libmtp: Add additional MTP devices. 
* gnu/packages/patches/libmtp-devices.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/patches/libmtp-devices.patch (libmtp)[source]: Add patch.
 2015-09-19 23:38:51 +02:00
Pjotr Prins edb15985f1 gnu: Add bioruby. 
* gnu/packages/bioinformatics.scm (bioruby): New variable.
 2015-09-19 12:41:52 -04:00
Pjotr Prins 28c5d42d35 gnu: Add ruby-libxml. 
* gnu/packages/ruby.scm (ruby-libxml): New variable.
 2015-09-19 12:31:42 -04:00
Ricardo Wurmus 7ac4610f7e gnu: Add ruby-shindo. 
* gnu/packages/ruby.scm (ruby-shindo): New variable.
 2015-09-19 08:51:27 -04:00
Ricardo Wurmus 8528365b0e gnu: Add ruby-formatador. 
* gnu/packages/ruby.scm (ruby-formatador): New variable.
 2015-09-19 08:51:13 -04:00
Ricardo Wurmus d152162fc1 gnu: Add ruby-notiffany. 
* gnu/packages/ruby.scm (ruby-notiffany): New variable.
 2015-09-19 08:49:11 -04:00
Ricardo Wurmus c5d14d4228 gnu: Add ruby-shellany. 
* gnu/packages/ruby.scm (ruby-shellany): New variable.
 2015-09-19 08:45:12 -04:00
Ricardo Wurmus 70b4cf3818 gnu: Add ruby-nenv. 
* gnu/packages/ruby.scm (ruby-nenv): New variable.
 2015-09-19 08:44:13 -04:00
Ricardo Wurmus ec79018e68 gnu: Add ruby-lumberjack. 
* gnu/packages/ruby.scm (ruby-lumberjack): New variable.
 2015-09-19 08:43:23 -04:00
Pjotr Prins 6aaa815e9f gnu: Add ruby-docile. 
* gnu/packages/ruby.scm (ruby-docile): New variable.
 2015-09-19 08:34:14 -04:00
Ludovic Courtès 8874f7668a gnu: ifstatus: Fix license. 
* gnu/packages/networking.scm (ifstatus)[license]: Set to GPL2+.
 2015-09-18 21:57:53 +02:00
Ludovic Courtès e0566f12f8 lint: Report lonely parentheses. 
* guix/scripts/lint.scm (%hanging-paren-rx): New variable.
  (report-lone-parentheses): New procedure.
  (%formatting-reporters): Use it.
* tests/lint.scm ("formatting: lonely parentheses"): New test.
 2015-09-18 21:54:04 +02:00
Stefan Reichoer 24a848c8e3 gnu: Add ifstatus. 
* gnu/packages/networking.scm (ifstatus): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2015-09-18 21:54:03 +02:00
Alex Kost 4f740b677a store: Add 'set-build-options*'. 
Suggested by: Ludovic Courtès <ludo@gnu.org>.

* guix/store.scm (set-build-options*): New procedure.
 2015-09-18 21:42:07 +03:00
Alex Kost fa394eb99c ui: Add 'show-derivation-outputs'. 
* guix/scripts/build.scm (guix-build): Extract code from here and move to...
* guix/ui.scm (show-derivation-outputs): ... here.  New procedure.
 2015-09-18 21:42:06 +03:00
Alex Kost 88981dd3e2 Add (guix scripts). 
* guix/ui.scm: Add missing copyright lines.
  (args-fold*, environment-build-options, %default-argument-handler,
  parse-command-line): Move to ...
* guix/scripts.scm: ...here.  New file.
* guix/scripts/archive.scm: Use it.
* guix/scripts/build.scm: Likewise.
* guix/scripts/download.scm: Likewise.
* guix/scripts/edit.scm: Likewise.
* guix/scripts/environment.scm: Likewise.
* guix/scripts/gc.scm: Likewise.
* guix/scripts/graph.scm: Likewise.
* guix/scripts/hash.scm: Likewise.
* guix/scripts/import/cpan.scm: Likewise.
* guix/scripts/import/cran.scm: Likewise.
* guix/scripts/import/elpa.scm: Likewise.
* guix/scripts/import/gem.scm: Likewise.
* guix/scripts/import/gnu.scm: Likewise.
* guix/scripts/import/hackage.scm: Likewise.
* guix/scripts/import/nix.scm: Likewise.
* guix/scripts/import/pypi.scm: Likewise.
* guix/scripts/lint.scm: Likewise.
* guix/scripts/package.scm: Likewise.
* guix/scripts/publish.scm: Likewise.
* guix/scripts/pull.scm: Likewise.
* guix/scripts/refresh.scm: Likewise.
* guix/scripts/size.scm: Likewise.
* guix/scripts/system.scm: Likewise.
* tests/ui.scm (with-environment-variable, "parse-command-line",
  "parse-command-line and --no options"): Move to ...
* tests/scripts.scm: ...here.  New file.
* Makefile.am (MODULES): Add guix/scripts.scm.
  (SCM_TESTS): Add tests/scripts.scm.
* po/guix/POTFILES.in: Add guix/scripts.scm.
 2015-09-18 21:42:06 +03:00
Alex Kost b2cb869cf9 emacs: Replace 'guix-any' with 'cl-some'. 
* emacs/guix-utils.el (guix-any): Remove.
* emacs/guix-command.el (guix-command-improve-argument): Use 'cl-some'
  instead of 'guix-any'.
 2015-09-18 21:41:46 +03:00
Alex Kost eda1cc8b5d emacs: Add commands to show/hide build log phases. 
Suggested by Ludovic Courtès <ludo@gnu.org>.

* emacs/guix-build-log.el (guix-build-log-phase-end-regexp): New
  variable.
  (guix-build-log-phase-start, guix-build-log-phase-end,
  guix-build-log-phase-hide, guix-build-log-phase-show,
  guix-build-log-phase-hidden-p, guix-build-log-phase-toggle-function,
  guix-build-log-phase-toggle, guix-build-log-phase-toggle-all): New functions.
  (guix-build-log-mode-map): Add 'TAB'/'S-TAB' key bindings.
* doc/emacs.texi (Emacs Build Log): Document them.
 2015-09-18 21:41:23 +03:00
Federico Beffa c093f9f63a gnu: Add scmutils. 
* gnu/packages/scheme.scm (scmutils): New variable.
 2015-09-18 14:55:53 +02:00
Pjotr Prins 212d563d26 gnu: Add ruby-bio-logger. 
* gnu/packages/ruby.scm (ruby-bio-logger): New variable.
 2015-09-17 17:41:22 -04:00