077d66ed42
gnu: mcrl2: Build with modular qt.
...
* gnu/packages/maths.scm (mcrl2)[inputs]: Replace qt with qtbase.
2018-07-29 20:00:30 +03:00
6465497fb9
gnu: Remove duplicated python-pafy.
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It was first added in 02f8f804f02dd12924cf
2018-07-29 17:57:53 +01:00
3b4b6667af
gnu: Remove duplicated perl-extutils-depends.
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This was first added in 84e8b19fe1017b014ce4
2018-07-29 17:57:53 +01:00
f694b4ba9c
gnu: Remove duplicated ghc-time-locale-compat.
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It was first added in 5e51bcf7b3c56a30b3ba
2018-07-29 17:57:52 +01:00
89b4882176
gnu: Remove duplicated ghc-th-lift-instances.
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It was first added in a6d1c4e75aff7dd11f0a
2018-07-29 17:57:52 +01:00
cfa6cc4d9a
gnu: Remove duplicated r-psych package.
...
It was first added in cdc129dc53db80dd4a1d
2018-07-29 17:57:52 +01:00
d493d59a7f
gnu: Remove duplicated emacs-load-relative.
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It was first added in fa1a17b786f8a88f223e
2018-07-29 17:57:52 +01:00
26b8cd1a5a
gnu: Remove duplicated emacs-csv-mode.
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It was first added in 9faa46ee488bc8efc753
2018-07-29 17:57:52 +01:00
3f8c82e6d3
gnu: taxtastic: Add missing propagated-inputs.
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* gnu/packages/bioinformatics.scm (taxtastic)[propagated-inputs]: Add
python-psycopg2, python-fastalite, python-pyyaml, python-six, python-jinja2,
python-dendropy.
2018-07-29 22:53:10 +10:00
9e0c135c39
gnu: python-dendropy: Update to 4.4.0.
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* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy):
Update to 4.4.0.
[source]: Use GitHub URI. Remove patch.
[properties]: Remove field.
(python2-dendropy)[arguments]: Run tests with setup.py.
[native-inputs]: Remove 'python2-nose.
* gnu/packages/patches/python-dendropy-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete it.
2018-07-29 22:53:10 +10:00
19601e895b
gnu: python2-psycopg2: Update to 2.7.5.
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* gnu/packages/bioinformatics.scm (python2-psycopg2): Update to 2.7.5.
2018-07-29 22:53:10 +10:00
5d5a02dd4c
gnu: Add python-fastalite.
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* gnu/packages/bioinformatics.scm (python-fastalite, python2-fastalite):
New variables.
2018-07-29 21:58:00 +10:00
10d5315361
gnu: Add chroma.
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* gnu/packages/games.scm (chroma): New variable.
2018-07-29 09:37:20 +02:00
f8e2df9851
gnu: linux-libre: Update to 4.17.11.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.11.
(%linux-libre-hash): Update hash.
2018-07-29 03:32:03 -04:00
c85a76cc00
gnu: linux-libre@4.14: Update to 4.14.59.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.59.
(%linux-libre-4.14-hash): Update hash.
2018-07-29 03:31:10 -04:00
8b30bc82dc
gnu: linux-libre@4.9: Update to 4.9.116.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.116.
2018-07-29 03:30:32 -04:00
4262a491ce
gnu: linux-libre@4.4: Update to 4.4.145.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.145.
2018-07-29 03:29:42 -04:00
6219685922
gnu: clojure: Fix index generation.
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* gnu/packages/java.scm (clojure)[arguments]: Add phase 'fix-manifest-classpath to remove
offending directory entry making indexing fail.
2018-07-29 08:41:34 +02:00
48d7ac175f
gnu: openlibm: Update to 0.6.0.
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* gnu/packages/maths.scm (openlibm): Update to 0.6.0.
2018-07-28 18:12:13 +02:00
46bda5eb7a
gnu: glm: Update home page.
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* gnu/packages/maths.scm (glm)[home-page]: Use HTTPS.
2018-07-28 17:56:59 +02:00
5ea4b5943d
gnu: glm: Update to 0.9.9.0.
...
* gnu/packages/maths.scm (glm): Update to 0.9.9.0.
[source](uri): Change to new download location.
2018-07-28 17:55:04 +02:00
71de61c353
gnu: libjpeg-turbo: Update license.
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* gnu/packages/image.scm (libjpeg-turbo)[license]: Add ZLIB.
2018-07-28 17:27:16 +02:00
6871121be0
gnu: libjpeg-turbo: Update to 2.0.0.
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* gnu/packages/image.scm (libjpeg-turbo): Update to 2.0.0.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
2018-07-28 17:27:16 +02:00
0981ec1300
gnu: accountsservice: Update to 0.6.50.
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* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.50.
[arguments]: Add "--enable-elogind" and "--disable-systemd" to #:configure-flags.
[inputs]: Add ELOGIND.
2018-07-28 17:27:15 +02:00
35fa923d8b
gnu: dconf: Update to 0.28.0.
...
* gnu/packages/gnome.scm (dconf): Update to 0.28.0.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[arguments]: Adjust accordingly.
[native-inputs]: Add VALA and GLIB:BIN.
2018-07-28 17:27:15 +02:00
e20e6b4061
gnu: dconf: Update license.
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* gnu/packages/gnome.scm (dconf)[license]: Change from LGPL2.1 to LGPL2.1+.
2018-07-28 17:27:15 +02:00
03676d6f35
gnu: dconf: Install GTK documentation.
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* gnu/packages/gnome.scm (dconf)[native-inputs]: Add GTK-DOC.
[arguments]: Adjust #:configure-flags accordingly.
2018-07-28 17:27:15 +02:00
bc036f4c99
gnu: dconf: Adjust inputs and remove obsolete workaround.
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* gnu/packages/gnome.scm (dconf)[inputs]: Remove GLIB and LIBXML2.
[propagated-inputs]: Add GLIB.
[native-inputs]: Add LIBXML2. Remove INTLTOOL.
[arguments]: Remove #:phases.
2018-07-28 17:27:15 +02:00
c95c9032b4
gnu: x265: Fix compilation on ARMv7.
...
* gnu/packages/patches/x265-arm-asm-primitives.patch: New file.
* gnu/packages/video.scm (x265)[sources](patches): Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-28 15:08:07 +02:00
5193ae64ca
gnu: mariadb: Work around GCC ICE on armhf-linux.
...
* gnu/packages/patches/mariadb-gcc-ice.patch: New file.
* gnu/packages/databases.scm (mariadb)[arguments]: Conditionally add
'apply-patch' phase.
[native-inputs]: Conditionally add "gcc-ice-patch" input.
2018-07-28 15:08:07 +02:00
b15a020dd5
gnu: allegro: Update to 5.2.4.0.
...
* gnu/packages/game-development.scm (allegro): Update to 5.2.4.0.
[source]: Update URL.
2018-07-27 14:30:49 -04:00
74a4fa5040
gnu: gcc@8: Update to 8.2.0.
...
* gnu/packages/gcc.scm (gcc-8): Update to 8.2.0.
2018-07-27 18:52:58 +02:00
f00d66b12c
gnu: Add font-blackfoundry-inria.
...
* gnu/packages/fonts.scm (font-blackfoundry-inria): New file.
2018-07-27 18:00:06 +02:00
223779c4c5
gnu: emacs-flycheck: Don't rely on pkg-info.el for 'flycheck-version'.
...
* gnu/packages/emacs.scm (flycheck)[source]: Add 'modules' and
'snippet'.
2018-07-27 18:00:06 +02:00
26fd7b24ec
gnu: pigx-scrnaseq: Disable another expensive test.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Disable multiqc
test.
2018-07-27 15:44:23 +02:00
ed2dfe3955
gnu: Add snakemake-4.
...
* gnu/packages/python.scm (snakemake-4): New variable.
* gnu/packages/bioinformatics.scm (pigx-bsseq, pigx-rnaseq, pigx-scrnaseq,
pigx-chipseq)[inputs]: Use it.
2018-07-27 15:30:38 +02:00
269f100330
gnu: snakemake: Add missing dependencies.
...
* gnu/packages/python.scm (snakemake)[propagated-inputs]: Add python-datrie,
python-docutils, python-jinja2, python-jsonschema, and python-networkx.
2018-07-27 15:30:38 +02:00
216a72a957
gnu: Add python-datrie.
...
* gnu/packages/python.scm (python-datrie): New variable.
2018-07-27 15:30:38 +02:00
beb8511c73
gnu: imagemagick: Update to 6.9.10-8.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-8.
2018-07-27 14:43:43 +02:00
2fcbc572f9
gnu: mbedtls-apache: Update to 2.7.5.
...
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.5.
2018-07-27 14:43:43 +02:00
b62715aa82
gnu: snakemake: Update to 5.2.0.
...
* gnu/packages/python.scm (snakemake): Update to 5.2.0.
2018-07-27 14:19:43 +02:00
22305f859b
gnu: guile-sdl2: Update to 0.3.0.
...
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.0.
[arguments]: Remove "patch-makefile" phase.
2018-07-27 14:19:33 +02:00
9dafb64711
gnu: tiled: Update to 1.1.6.
...
* gnu/packages/game-development.scm (tiled): Update to 1.1.6.
[arguments]: Substitute invoke for system*.
2018-07-27 00:17:06 -04:00
6e92fba4b0
gnu: python-xsge: Update to 2018.02.26.
...
* gnu/packages/game-development.scm (python-xsge, python2-xsge): Update to
2018.02.26.
[arguments]: Substitute invoke for system*.
2018-07-26 23:35:45 -04:00
d36b98ad95
gnu: freeciv: Update to 2.6.0.
...
* gnu/packages/games.scm (freeciv): Update to 2.6.0.
2018-07-26 14:43:10 -04:00
e8ec2dda08
gnu: ecryptfs-utils: Patch more hardcoded paths.
...
* gnu/packages/linux.scm (ecryptfs-utils): [arguments]: Add an additional file
to be patched that was missing in the last fix. Ecryptfs will now find the
umount binary path as well as mount and others. Re-sort the list of files to be
substituted.
Signed-off-by: Leo Famulari <leo@famulari.name>
2018-07-26 13:19:57 -04:00
92526ade57
gnu: cabextract: Delete bundled libmspack.
...
* gnu/packages/compression.scm (cabextract)[source](modules, snippet): New field.
2018-07-26 17:30:18 +02:00
e0a98e7bd5
gnu: cabextract: Update to 1.7.
...
* gnu/packages/compression.scm (cabextract): Update to 1.7.
2018-07-26 17:28:35 +02:00
4bda2274a5
gnu: fuse: Update source hash.
...
The fuse 2.9.8 tarball and signature was modified in place. Both are signed
by the same key, at different dates, and the only differences are directory
timestamps and a ChangeLog update.
* gnu/packages/linux.scm (fuse)[source](sha256): Update.
2018-07-26 17:17:45 +02:00
a9446dde2b
gnu: make-u-boot-package: Don't install "sunxi-spl-with-ecc.bin".
...
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]<#:phases>
[install]: Don't install "sunxi-spl-with-ecc.bin".
2018-07-26 15:54:52 +02:00
Efraim Flashner