Commit Graph

1868 Commits

Author SHA1 Message Date
Ricardo Wurmus 12d38e8d43 build: Add bioconductor-uri procedure.
* guix/build-system/r.scm (bioconductor-uri): New procedure.
2015-12-21 22:32:01 +01:00
Ricardo Wurmus be036757bd import: Drop empty list items.
* guix/import/cran.scm (listify): Remove empty strings from result list.
2015-12-21 15:24:54 +01:00
Ricardo Wurmus 0cb5bc2cff http-client: Support basic authentication.
* guix/http-client.scm (http-fetch): Add Authorization header to request
  when the URI contains userinfo.
2015-12-21 15:24:44 +01:00
Ludovic Courtès c5b303c57f lint: The CPE name of GRUB is "grub2".
Reported by Leo Famulari.

* guix/scripts/lint.scm (package-name->cpe-name): Add "grub".
2015-12-20 22:34:22 +01:00
Ludovic Courtès ccda8f7d7f profiles: Honor search paths of propagated inputs.
Fixes <http://bugs.gnu.org/22073>.
Reported by Federico Beffa <beffa@ieee.org>.

* guix/profiles.scm (package->manifest-entry): Use
'package-transitive-native-search-paths' when computing
'search-paths' field.
* tests/profiles.scm ("package->manifest-entry, search paths"): New test.
2015-12-20 22:34:22 +01:00
Ludovic Courtès aa8e051532 packages: Add 'package-transitive-native-search-paths'.
* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
2015-12-20 22:34:22 +01:00
Ludovic Courtès 9d3994f700 gexp: 'local-file' resolves relative file names.
* guix/gexp.scm (<local-file>): Rename constructor to '%%local-file'.
Add 'absolute' field.
(%local-file, extract-directory, absolute-file-name): New procedures.
(current-source-directory): New macro.
(local-file): Adjust call to '%local-file'.
(local-file-absolute-file-name): New procedure.
(local-file-compiler): Force the 'absolute' field.
* tests/guix-system.sh: Test whether 'local-file' canonicalization
works.
* doc/guix.texi (G-Expressions): Adjust.
2015-12-14 19:57:42 +01:00
Ludovic Courtès 4fef1e850e profiles: Silence Info installation.
* guix/profiles.scm (info-dir-file)[build]: Pass --silent to
'install-info'.
2015-12-14 19:57:42 +01:00
Ludovic Courtès 20464dde13 guix build: Gracefully handle type errors in -e and -f.
* guix/scripts/build.scm (options->things-to-build)[validate-type]: New
procedure.
[ensure-list]: Use it.
2015-12-13 21:13:16 +01:00
Ludovic Courtès ee2a7e3fd2 guix build: Remove dead code.
* guix/scripts/build.scm (options->things-to-build): Remove unused
'match' clause.
2015-12-13 21:04:56 +01:00
Ricardo Wurmus 0f6b9e9828 import: cran: Parse DESCRIPTION instead of HTML.
* guix/import/cran.scm (description->alist, listify,
  beautify-description, description->package): New procedures.
(table-datum, downloads->url, nodes->text, cran-sxml->sexp): Remove
proceduces.
(latest-release): Use parsed DESCRIPTION instead of SXML.
* tests/cran.scm: Rewrite to match importer.
2015-12-11 15:35:07 +01:00
Ricardo Wurmus b6a222757b import: cran: Match more license strings.
* guix/import/cran.scm (string->license): Match more license strings to
  license symbols.
2015-12-11 15:35:07 +01:00
Ludovic Courtès 873d0ff2cd gnu-maintenance: Really find the latest GNOME releases.
Reported by Efraim Flashner <efraim@flashner.co.il>
at <https://lists.gnu.org/archive/html/guix-devel/2015-12/msg00202.html>.

* guix/gnu-maintenance.scm (latest-ftp-release): Call KEEP-FILE? on
directories too.
(latest-gnome-release)[even-minor-version?]: Protect again MINOR being
false; change pattern to match VERSION with two or more numbers.  Remove
use of 'version-major+minor'.
[even-numbered-tarball?]: Rename to...
[even-numbered?]: ... this.  Use 'package-name->name+version'.  When
VERSION is #f, check NAME.
2015-12-09 22:18:47 +01:00
Ludovic Courtès a8d65643fb guix build: Add '--check'.
* guix/derivations.scm (build-derivations): Add optional 'mode'
parameter.
* guix/scripts/build.scm (%default-options): Add 'build-mode'.
(show-help, %options): Add '--check'.
(guix-build): Honor 'build-mode' key of OPTS.  Pass it to
'show-what-to-build' and 'build-derivations'.
* doc/guix.texi (Invoking guix build): Document it.
(Substitutes): Mention it.
2015-12-09 14:29:41 +01:00
Ludovic Courtès 58c08df054 derivations: Determine what's built in 'check' mode.
* guix/derivations.scm (substitution-oracle): Add #:mode parameter and
honor it.
(derivation-prerequisites-to-build): Likewise.
[derivation-built?]: Take it into account.
* guix/ui.scm (show-what-to-build): Add #:mode parameter.  Pass it to
'substitute-oracle' and 'derivations-prerequisites-to-build'.
* tests/derivations.scm ("derivation-prerequisites-to-build in 'check'
mode"): New test.
2015-12-09 14:29:41 +01:00
Ludovic Courtès 5b74fe065b guix build: Add '--rounds'.
* guix/scripts/build.scm (show-build-options-help)
(%standard-build-options): Add --rounds.
(set-build-options-from-command-line): Honor it.
* doc/guix.texi (Invoking guix build): Document it.
* doc/contributing.texi (Submitting Patches): Mention it.
2015-12-08 23:58:12 +01:00
Ludovic Courtès 2fba87ac7c store: Allow clients to request multiple builds.
* guix/store.scm (set-build-options): Add #:rounds parameter and honor it.
* tests/store.scm ("build multiple times"): New test.
2015-12-08 23:58:12 +01:00
Ludovic Courtès c499125704 gnu-maintenance: Exclude development releases from GNOME update candidates.
Suggested by Efraim Flashner <efraim@flashner.co.il>.

* guix/gnu-maintenance.scm (latest-ftp-release): Add #:keep-file?
parameter and honor it.
(latest-gnome-release)[%not-dot]: New variable.
[even-minor-version?, even-numbered-tarball?]: New procedures.
Pass EVEN-NUMBERED-TARBALL? as #:keep-file? argument.
2015-12-08 16:09:33 +01:00
Ludovic Courtès 6efa6f7645 gnu-maintenance: ftp.gnome.org does not provide signatures.
* guix/gnu-maintenance.scm (latest-ftp-release): Add #:file->signature
parameter.  Honor it.
(latest-gnome-release): Pass #:file->signature.
* guix/upstream.scm (coalesce-sources): Keep 'signature-urls' as #f
unless both sources provide it.
2015-12-07 23:57:20 +01:00
Ludovic Courtès e80c0f85ba gnu-maintenance: Add GNOME updater.
* guix/gnu-maintenance.scm (ftp-server/directory)[quirks]: Remove glib.
(false-if-ftp-error): New macro.
(latest-release*): Use it.
(non-emacs-gnu-package?): Rename to...
(pure-gnu-package?): ... this.  Add call to 'gnome-package?'.
(%gnu-updater): Adjust accordingly.
(gnome-package?, latest-gnome-release): New procedures.
(%gnome-updater): New variable.
* guix/scripts/refresh.scm (%updaters): Add %GNOME-UPDATER.
* doc/guix.texi (Invoking guix refresh): Mention it.
2015-12-07 23:32:01 +01:00
Ludovic Courtès e946f2ec92 gnu-maintenance: Generalize 'latest-ftp-release'.
* guix/gnu-maintenance.scm (latest-release): Rename to...
(latest-ftp-release): ... this.  Add #:server and #:directory
parameters.
(latest-release): New procedure.
2015-12-07 23:32:01 +01:00
Ludovic Courtès fba607b129 refresh: Bail out when asked for a nonexistent updater.
* guix/scripts/refresh.scm (lookup-updater): Call 'leave' when 'find'
returns #f.
2015-12-07 23:32:01 +01:00
Ludovic Courtès e3cc793e7c gnu-maintenance: Do not look for releases in "w32" sub-directories.
* guix/gnu-maintenance.scm (latest-release): Filter out "w32"
directories.
2015-12-07 23:32:01 +01:00
Ludovic Courtès 202440e07a gnu-maintenance: Add tests for 'release-file?'.
* tests/gnu-maintenance.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* guix/gnu-maintenance.scm (release-file?): Export.
2015-12-07 23:32:01 +01:00
Ludovic Courtès fa04a04f18 gnu-maintenance: Properly handle TeXmacs.
* guix/gnu-maintenance.scm (ftp-server/directory): Add comment.
(release-file?): Use 'string-ci=?' instead of 'equal?' when comparing
project names.
2015-12-07 23:32:01 +01:00
Ludovic Courtès f00dccf441 gnu-maintenance: Adjust tarball regexp for IceCat tarballs.
* guix/gnu-maintenance.scm (%tarball-rx): Tweak to match IceCat tarball
patterns.
2015-12-07 23:32:01 +01:00
Ludovic Courtès b6124f00b8 gnu-maintenance: Fix URLs returned by 'latest-release' for deep trees.
With this, (latest-release "gcc") returns an <upstream-source> with URL:

  ftp://ftp.gnu.org/gnu/gcc/gcc-5.3.0/gcc-5.3.0.tar.gz

Previous it would omit "gcc-5.3.0/" from the URL.

Fixes a regression introduced in 0a7c5a0.

* guix/gnu-maintenance.scm (latest-release)[file->url, file->source]:
Add 'directory' parameter.  Update users.
2015-12-07 23:32:01 +01:00
Mathieu Lirzin cd08fe4259 edit: Don't assume that an emacs daemon is running.
* guix/scripts/edit.scm (%editor): Use Emacs as a default value.
2015-12-06 17:23:25 +01:00
Mathieu Lirzin b16dbd1311 edit: Allow command line arguments in $VISUAL and $EDITOR.
* guix/scripts/edit.scm (guix-edit): Fix the assumption that %editor is
a one word command.
2015-12-06 17:23:21 +01:00
Ludovic Courtès 2aacd9179c profiles: Silence GTK+ icon cache creation.
Suggested by Ricardo Wurmus <rekado@elephly.net>.

* guix/profiles.scm (gtk-icon-themes)[build]: Pass --quiet to
'gtk-update-icon-cache'.
2015-12-04 23:12:02 +01:00
Ludovic Courtès 4bddf74ef2 profiles: Silence GTK+ icon theme union.
Suggested by Ricardo Wurmus <rekado@elephly.net>.

* guix/profiles.scm (gtk-icon-themes)[build]: Pass 'union-build' a
  #:log-port argument.
2015-12-04 23:12:02 +01:00
Ludovic Courtès 2734cbb895 store: 'build-things' now supports older daemon protocols.
This is a followup to d203d3d.

* guix/store.scm (build-things): Add 'build/old'.  Use it when STORE's
minor version is less than 15.
2015-12-04 11:34:18 +02:00
Ludovic Courtès 07e70f4846 store: Add mode parameter to 'build-paths'.
* guix/store.scm (%protocol-version): Set minor to 15.
(build-mode): New enumerate type.
(build-things): Add 'mode' parameter; pass it to the RPC.
* tests/store.scm ("build-things, check mode"): New check.
2015-12-03 19:09:53 +02:00
Ludovic Courtès d203d3d4cb store: Update to the new daemon protocol.
* guix/store.scm (%protocol-version): Set minor to 14.
(open-connection): Add 'cpu-affinity' parameter and honor it.
2015-12-03 19:09:53 +02:00
Ludovic Courtès 85dce718cb import: pypi: Updater silently ignores packages without source.
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00764.html>.

* guix/import/pypi.scm (&missing-source-error): New error type.
(latest-source-release): Raise it instead of using 'error'.
(pypi->guix-package): Guard against it and use 'leave' to report the
error.
(latest-release): Guard against it and return #f when caught.
2015-12-01 23:18:48 +01:00
Ludovic Courtès 64ec0e2912 guix build: Modularize transformation handling.
* guix/scripts/build.scm (options/resolve-packages): Remove.
(options->things-to-build, transform-package-source): New procedure.
(%transformations): New variable.
(options->transformation): New procedure.
(options->derivations): Rewrite to use 'options->things-to-build' and
'options->transformation'.
2015-12-01 00:02:54 +02:00
Ludovic Courtès 27b91d7851 guix package: Refactor 'options->installable'.
* guix/scripts/package.scm (options->upgrade-predicate)
(store-item->manifest-entry): New procedures.
* guix/scripts/package.scm (options->installable): Use them.  Remove the
'packages-to-upgrade' and 'packages-to-install' variables by getting rid
of a level of indirection.
2015-12-01 00:02:54 +02:00
Ludovic Courtès 6e37017506 guix package: Move 'process-actions' out of sight.
* guix/scripts/package.scm (process-actions): New procedure, moved
from...
(guix-package): ... here.  Adjust accordingly.
2015-12-01 00:02:54 +02:00
Ludovic Courtès 590558953b guix package: Formalize the list of actions.
* guix/scripts/package.scm (roll-back-action, switch-generation-action)
(delete-generations-action, manifest-action): New procedures.
(%actions): New variable.
* guix/scripts/package.scm (guix-package)[process-action]: Rewrite to
traverse %ACTIONS.
2015-12-01 00:02:54 +02:00
Ludovic Courtès d1ac5c0775 guix package: Move 'build-and-use-profile' out of sight.
* guix/scripts/package.scm (build-and-use-profile): New procedure.
Adapted and moved from...
(guix-package)[process-actions]: ... here.  Adjust call sites.
2015-12-01 00:02:54 +02:00
Ludovic Courtès 2cc10077f3 guix package: Move a couple of procedures out of sight.
* guix/scripts/package.scm (ensure-default-profile, process-query): New
procedures, moved from...
(guix-package): ... here.
2015-12-01 00:02:54 +02:00
Ludovic Courtès 0993f94267 guix package: Remove unnecessary use of (%store).
* guix/scripts/package.scm (delete-matching-generations): Use STORE
instead of (%store).
2015-12-01 00:02:54 +02:00
Ludovic Courtès a665996f58 gnu: python: Set SOURCE_DATE_EPOCH to 1 instead of 0.
* gnu/packages/python.scm (python-2)[arguments]: Set SOURCE_DATE_EPOCH
  to 1 to match what the daemon does.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): Likewise.
2015-11-29 22:59:28 +01:00
Ludovic Courtès dedc832070 gnu: python-2: Honor 'SOURCE_DATE_EPOCH'.
* gnu/packages/patches/python-2.7-source-date-epoch.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
  [arguments]: Set SOURCE_DATE_EPOCH in 'patch-lib-shells' phase.
* guix/build/python-build-system.scm (set-SOURCE-DATE-EPOCH): New
  procedure.
  (%standard-phases): Add it.
* gnu-system.am (dist_patch_DATA): Add patch.
2015-11-29 22:59:28 +01:00
Ludovic Courtès 26059753ae refresh: Check updater availability at run time.
This is a followup to b68d2db, which added a check for updaters at
macro-expansion time.  The problem is that, when running 'guix pull',
Guile-JSON is found, so the PyPi updater (say) is added to %UPDATERS,
but then at run time Guile-JSON might be missing.

Reported by orbea on #guix.

* guix/scripts/refresh.scm (maybe-updater): Rewrite as 'syntax-rules'.
Produce code that checks conditions at run time.
(list-updaters): Update docstring.
2015-11-29 22:56:29 +01:00
Ludovic Courtès 25d188ce12 http-client: 'http-fetch' converts strings to URIs.
* guix/http-client.scm (http-fetch): Use 'string->uri' if URI is a
string.  Fixes a regression introduced in 8a5063f.
2015-11-29 17:46:11 +01:00
Ludovic Courtès 841cb43c6b guix build: Factorize build log query.
* guix/scripts/build.scm (show-build-log): New procedure.
(guix-build): New variable 'items'.  Use it and 'show-build-log'.
2015-11-29 17:42:01 +01:00
Ludovic Courtès 471cdfdb19 environment: Set build options early on.
This fixes a bug whereby some options, such as #:substitute-urls, would
be passed to the daemon too late to have an effect.

* guix/scripts/environment.scm (build-inputs): Remove call to
'set-build-options-from-command-line*'.
(guix-environment): Add call to 'set-build-options-from-command-line' as
early as possible.
2015-11-28 21:53:51 +01:00
Ludovic Courtès 4e70fe4d0e lint: Do not report already-patched vulnerabilities.
* guix/scripts/lint.scm (patch-file-name): New procedure.
(check-vulnerabilities): Use it to filter out patched vulnerabilities.
* tests/lint.scm ("cve: one patched vulnerability"): New test.
2015-11-28 16:15:31 +01:00
Ludovic Courtès ae4427e3f3 substitute: Warn upon store prefix mismatches.
Suggested by Hynek Urban <hynek.urban@gmail.com>.

* guix/scripts/substitute.scm (fetch-narinfos): Move body to...
[do-fetch]: ... here.  New procedure.
Emit a warning when CACHE-INFO's prefix does not match.
2015-11-28 00:02:23 +01:00