Commit Graph

40396 Commits

Author SHA1 Message Date
Leo Famulari eebf6380a4
gnu: go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg: Update to 0.4.1.
* gnu/packages/syncthing.scm
(go-github-com-prometheus-common-internal-bitbucket-org-ww-goautoneg):
Update to 0.4.1.
2019-07-29 14:57:06 -04:00
Leo Famulari a85a78eb24
gnu: go-github-com-golang-protobuf-proto: Update to 1.3.1.
* gnu/packages/syncthing.scm (go-github-com-golang-protobuf-proto):
Update to 1.3.1.
2019-07-29 14:57:05 -04:00
Leo Famulari 371b704299
gnu: go-github-com-prometheus-client-model-go: Update to 0.0.2-1.fd36f42.
* gnu/packages/syncthing.scm (go-github-com-prometheus-client-model-go):
Update to 0.0.2-1.fd36f42.
2019-07-29 14:57:05 -04:00
Leo Famulari 307f2c44af
gnu: Go standard library 'net' packages: Update to 0.0.0-3.d28f0bd.
* gnu/packages/golang.scm (go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf,
go-golang-org-x-net-context, go-golang-org-x-net-internal-socks,
go-golang-org-x-net-internal-socket, go-golang-org-x-net-internal-iana,
go-golang-org-x-net-ipv6, go-golang-org-x-net-proxy): Update to 0.0.0-3.d28f0bd.
(go-golang-org-x-net-ipv4, go-golang-org-x-net-bpf,
go-golang-org-x-net-internal-socket,
go-golang-org-x-net-ipv6)[propagated-inputs]: Add go-golang-org-x-sys-unix
2019-07-29 14:57:05 -04:00
Leo Famulari 957e6f7289
gnu: Go standard 'sys' packages: Update to 0.0.0-3.5ed2794.
* gnu/packages/golang.scm (go-golang-org-x-sys-unix,
go-golang-org-x-sys-cpu): Update to 0.0.0-3.5ed2794.
2019-07-29 14:57:05 -04:00
Leo Famulari a2dbcfdd9d
gnu: go-gopkg-in-check-v1: Update to v1-1.0.0-1.788fd78.
* gnu/packages/golang.scm (go-gopkg-in-check-v1): Update to v1-1.0.0-1.788fd78.
2019-07-29 14:57:05 -04:00
Leo Famulari c17e69b3aa
gnu: go-gopkg-in-yaml-v2: Update to 2.2.2.
* gnu/packages/golang.scm (go-gopkg-in-yaml-v2): Update to 2.2.2.
2019-07-29 14:57:04 -04:00
Leo Famulari 8629d8eda7
gnu: Prometheus Go client: Update to 0.9.4.
* gnu/packages/syncthing.scm
(go-github-com-client-golang-prometheus-promhttp,
go-github-com-prometheus-client-golang-prometheus): Update to 0.9.4.
2019-07-29 14:57:04 -04:00
Leo Famulari a93e2392ca
gnu: go-github-com-syndtr-goleveldb: Update to 1.0.1-3.c3a204f.
* gnu/packages/syncthing.scm (go-github-com-syndtr-goleveldb): Update to
1.0.1-3.c3a204f.
2019-07-29 14:57:04 -04:00
Leo Famulari 48e1cbdf6e
gnu: Add go-github-com-ccding-go-stun.
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): New variable.
2019-07-29 14:57:04 -04:00
Leo Famulari 7cb9c4e2e1
gnu: Add go-github-com-audriusbutkevicius-pfilter.
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-pfilter):
New variable.
2019-07-29 14:57:03 -04:00
Leo Famulari e5906bb440
gnu: Go Prometheus tools: Update to 0.9.3.
* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus-promhttp,
go-github-com-prometheus-client-golang-prometheus): Update to 0.9.3.
2019-07-29 14:57:03 -04:00
Leo Famulari d0ced446d0
gnu: Add go-github-com-maruel-panicparse.
* gnu/packages/golang.scm (go-github-com-maruel-panicparse): New variable.
2019-07-29 14:57:03 -04:00
Leo Famulari 8ffc727e38
gnu: go-github-com-getsentry-raven-go: Update to 0.2.0-0.5c24d51.
* gnu/packages/golang.scm (go-github-com-getsentry-raven-go): Update to
0.2.0-0.5c24d51.
(propagated-inputs): Add go-github-com-certifi-gocertifi and
go-github-com-pkg-errors.
2019-07-29 14:57:03 -04:00
Leo Famulari ea22aa1faf
gnu: Add go-github-com-certifi-gocertifi.
* gnu/packages/tls.scm (go-github-com-certifi-gocertifi): New variable.
2019-07-29 14:57:03 -04:00
Leo Famulari 8c6be10aba
gnu: go-github-com-pkg-errors: Update to 0.8.1-0.27936f6.
* gnu/packages/golang.scm (go-github-com-pkg-errors): Update to 0.8.1-0.27936f6.
2019-07-29 14:57:03 -04:00
Leo Famulari 2da5275f81
gnu: Move go-github-com-pkg-errors to the Golang package module.
* gnu/packages/syncthing.scm (go-github-com-pkg-errors): Move ...
* gnu/packages/golang.scm (go-github-com-pkg-errors): ... here.
2019-07-29 14:57:02 -04:00
Leo Famulari 6d766bec44
gnu: Add go-github-com-lucas-clemente-quic-go.
* gnu/packages/golang.scm (go-github-com-lucas-clemente-quic-go: New variable.
2019-07-29 14:57:02 -04:00
Leo Famulari 8201afdf0c
gnu: Add go-github-com-cheekybits-genny.
* gnu/packages/golang.scm (go-github-com-cheekybits-genny): New variable.
2019-07-29 14:57:02 -04:00
Leo Famulari a3b1dc49bb
gnu: Add go-github-com-marten-seemann-qtls.
* gnu/packages/golang.scm (go-github-com-marten-seemann-qtls): New variable.
2019-07-29 14:57:02 -04:00
Leo Famulari 5bbf203c34
gnu: Add go-golang-org-x-crypto.
* gnu/packages/golang.scm (go-golang-org-x-crypto): New variable.
2019-07-29 14:57:02 -04:00
Leo Famulari 33b67efeb4
gnu: Add go-golang-org-x-tools.
* gnu/packages/golang.scm (go-golang-org-x-tools): New variable.
2019-07-29 14:57:02 -04:00
Brian Leung cb3625bcd7
gnu: Add go-github-com-junegunn-fzf.
* gnu/packages/terminals.scm (go-github-com-junegunn-fzf): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:17:22 +02:00
Brian Leung f81573500e
gnu: Add go-github-com-mattn-go-shellwords.
* gnu/packages/golang.scm (go-github-com-mattn-go-shellwords): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:10:21 +02:00
Brian Leung a6689b99ef
gnu: Add go-github-com-gdamore-tcell.
* gnu/packages/golang.scm (go-github-com-gdamore-tcell): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:10:13 +02:00
Brian Leung d050000a44
gnu: go-github.com-mattn-go-runewidth: Update to 0.0.4-1.703b5e6.
* gnu/packages/textutils.scm (go-github.com-mattn-go-runewidth): Update to
0.0.4-1.703b5e6.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:09:39 +02:00
Brian Leung 42a0cfee60
gnu: Add go-github-com-gdamore-encoding.
* gnu/packages/golang.scm (go-github-com-gdamore-encoding): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:09:27 +02:00
Brian Leung a881a087e5
gnu: Add go-golang-org-colorful.
* gnu/packages/golang.scm (go-golang-org-colorful): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:09:18 +02:00
Brian Leung be42a38a5b
gnu: Add go-golang-org-sql-mock.
* gnu/packages/golang.scm (go-golang-org-sql-mock): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:09:05 +02:00
Brian Leung bd184dc6eb
gnu: go-golang-org-x-text-unicode-norm: Inherit from related package.
* gnu/packages/golang.scm (go-golang-org-x-text-unicode-norm): Inherit from
go-golang-org-x-text-encoding.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:08:48 +02:00
Brian Leung 7e6da91fa7
gnu: go-golang-org-x-text-transform: Inherit from related package.
* gnu/packages/golang.scm (go-golang-org-x-text-transform): Inherit from
go-golang-org-x-text-encoding.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:08:33 +02:00
Brian Leung 06c2d0e6c1
gnu: Add go-golang-org-x-text-encoding.
* gnu/packages/golang.scm (go-golang-org-x-text-encoding): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-07-29 16:08:18 +02:00
Rutger Helling 767a0a18d8
gnu: btrfs-progs: Update to 5.2.1.
* gnu/packages/linux.scm (btrfs-progs): Update to 5.2.1.
2019-07-29 13:55:00 +02:00
Mark H Weaver ab20b3ed91
gnu: linux-libre: Update to 5.2.4.
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.4.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
2019-07-28 19:00:12 -04:00
Mark H Weaver b64b66b890
gnu: linux-libre@4.19: Update to 4.19.62.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.62.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
2019-07-28 18:58:44 -04:00
Kei Kebreau 2cf1e37c10
gnu: gnome-maps: Update to 3.30.3.1.
* gnu/packages/geo.scm (gnome-maps): Update to 3.30.3.1.
[inputs]: Replace gdk-pixbuf with gdk-pixbuf+svg and gnome-online-accounts
with gnome-online-accounts:lib.
[arguments]: Adjust 'wrap' phase accordingly.
2019-07-28 08:59:17 -04:00
Rutger Helling 7e5eda0c08
gnu: unbound: Update to 1.9.2.
* gnu/packages/dns.scm (unbound): Update to 1.9.2.
2019-07-28 11:06:59 +02:00
Marius Bakke b23579d0da
gnu: signify: Update to 26.
* gnu/packages/crypto.scm (signify): Update to 26.
[source]: Change to URL-FETCH to get the shiny new release tarball.
2019-07-27 23:58:49 +02:00
Marius Bakke 9b7f721db9
gnu: feh: Update to 3.2.1.
* gnu/packages/image-viewers.scm (feh): Update to 3.2.1.
2019-07-27 23:58:49 +02:00
Marius Bakke d5571bc652
gnu: nginx: Update to 1.17.2. 2019-07-27 23:58:49 +02:00
Marius Bakke bfbc2d876a
gnu: zstd: Update to 1.4.2. 2019-07-27 23:58:49 +02:00
Marius Bakke eca0a885e7
gnu: kodi: Update to 18.3.
* gnu/packages/kodi.scm (kodi): Update to 18.3.
2019-07-27 23:58:49 +02:00
Arne Babenhauserheide 85a4531f64
gnu: pngcrush: Edit description.
* gnu/packages/image.scm (pngcrush)[description]: Fix typo.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-07-27 23:25:22 +02:00
Tobias Geerinckx-Rice 3563220e1e
gnu: Add libva-utils.
* gnu/packages/video.scm (libva-utils): New public variable.
2019-07-27 23:25:22 +02:00
Tobias Geerinckx-Rice d8d7565b82
gnu: Add intel-vaapi-driver.
* gnu/packages/video.scm (intel-vaapi-driver): New public variable.
2019-07-27 23:25:21 +02:00
Mark H Weaver 76b96720e2
gnu: linux-libre: Update to 5.2.3.
* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.3.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
2019-07-27 17:07:58 -04:00
Mark H Weaver d83514baf2
gnu: linux-libre@4.19: Update to 4.19.61.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.61.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
2019-07-27 17:07:55 -04:00
Mark H Weaver e78c2b50df
gnu: linux-libre: Update deblobbing scripts.
* gnu/packages/linux.scm (deblob-scripts-5.2, deblob-scripts-4.19): Update
to versions 5.2.3 and 4.19.61 respectively, and update the hashes.
(deblob-scripts-4.14, deblob-scripts-4.9, deblob-scripts-4.4): Update to
versions 4.14.134, 4.9.186, and 4.4.186 respectively, although the scripts
themselves are unchanged.
2019-07-27 17:07:53 -04:00
Mark H Weaver d0aff87337
gnu: linux-libre: Verbosely pack the deblobbed linux-libre tarball.
This works around timeouts that sometimes occur after 1 hour of silence
while packing the linux-libre source tarball on slower machines.

* gnu/packages/linux.scm (make-linux-libre-source): Pass 'v' to 'tar'
when packing the result tarball.
2019-07-27 17:07:51 -04:00
Tobias Geerinckx-Rice 24446ce299
gnu: linux-libre: Restrict ‘dmesg’ to privileged users.
* gnu/packages/linux.scm (%default-extra-linux-options):
Set CONFIG_SECURITY_DMESG_RESTRICT.
2019-07-27 01:18:24 +02:00
Ludovic Courtès 4b0356590a
gnu: hpcguix-web: Update to f39c90b.
* gnu/packages/web.scm (hpcguix-web): Update to f39c90b.
[propagated-inputs]: Use GUILE-JSON-3 instead of GUILE-JSON-1.
2019-07-27 01:04:57 +02:00
Jens Mølgaard 1a2d0d294b
gnu: Add emacs-mastodon.
* gnu/packages/emacs-xyz.scm (emacs-mastodon): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 01:00:03 +02:00
Jens Mølgaard d3f2f86a7f
gnu: Add emacs-wc-mode.
* gnu/packages/emacs-xyz.scm (emacs-wc-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 01:00:03 +02:00
Jens Mølgaard 40c4c0058f
gnu: Add emacs-ox-pandoc.
* gnu/packages/emacs-xyz.scm (emacs-ox-pandoc): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 01:00:03 +02:00
Jens Mølgaard 9f0ae848e2
gnu: Add emacs-ox-epub.
* gnu/packages/emacs-xyz.scm (emacs-ox-epub): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 01:00:03 +02:00
Jens Mølgaard 74a2489009
Add emacs-gnus-alias.
* gnu/packages/emacs-xyz.scm (emacs-gnus-alias): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 00:59:47 +02:00
Jens Mølgaard c1cae86de3
gnu: Add emacs-bug-hunter.
* gnu/packages/emacs-xyz.scm (emacs-bug-hunter): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-27 00:59:41 +02:00
Jakob L. Kreuze d23a00b599
tests: Add reconfigure system test.
[[PGP Signed Part:No public key for F506FD169D8FD95A created at 2019-07-24T18:35:10+0200 using RSA]]
* gnu/tests/reconfigure.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-26 19:19:49 +02:00
Jakob L. Kreuze 5c793753b3
guix system: Add 'reconfigure' module.
* guix/scripts/system/reconfigure.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/system.scm (bootloader-installer-script): Export variable.
* gnu/machine/ssh.scm (switch-to-system, upgrade-shepherd-services)
(install-bootloader): Delete variable.
* gnu/machine/ssh.scm (deploy-managed-host): Rewrite procedure.
* gnu/services/herd.scm (live-service): Export variable.
* gnu/services/herd.scm (live-service-canonical-name): New variable.
* tests/services.scm (live-service): Delete variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-07-26 19:19:49 +02:00
Rutger Helling 20269b6e08
gnu: sdl2: Update to 2.0.10.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.10.
2019-07-26 19:08:46 +02:00
Ludovic Courtès 422e187fb4
gnu: jami-client-gnome: Rename to 'jami'.
* gnu/packages/telephony.scm (jami-client-gnome): Rename to...
(jami): ... this.  Update 'name' field accordingly.
(jami-client-gnome): New variable.
2019-07-26 11:21:36 +02:00
Tobias Geerinckx-Rice cf40f8e4d7
gnu: vlc: Update to 3.0.7.1.
* gnu/packages/video.scm (vlc): Update to 3.0.7.1.
2019-07-26 09:48:37 +02:00
Tobias Geerinckx-Rice 332a276503
gnu: clusterssh: Run.
* gnu/packages/admin.scm (clusterssh)[arguments]:
Add ’augment-library-path’ phase so libraries are found.
[propagated-inputs]: Make all of these…
[inputs]: …regular.
2019-07-26 09:48:37 +02:00
Tobias Geerinckx-Rice 3d909a0acf
gnu: youtube-dl: Update to 2019.07.16.
* gnu/packages/video.scm (youtube-dl): Update to 2019.07.16.
2019-07-26 01:16:40 +02:00
Tobias Geerinckx-Rice 28e4c3bbb0
gnu: dkimproxy: Fix dkim_responder.pl.
* gnu/packages/mail.scm (dkimproxy)[arguments]: Wrap dkim_responder.pl.
[inputs]: Add perl-mime-tools and perl-timedate.
2019-07-26 01:16:40 +02:00
Tobias Geerinckx-Rice 8c07824c52
gnu: dkimproxy: Factorise wrapping.
This is a follow-up to 66e39000c6, in a
way, since it adds the forgotten *6 inputs.

* gnu/packages/mail.scm (dkimproxy)[arguments]: Refactor ’make-wrapper’ phase.
Add perl-io-socket-inet6 and perl-socket6 to the list.
2019-07-26 01:16:39 +02:00
Tobias Geerinckx-Rice d045dce16d
gnu: dkimproxy: Keyword-stuff descriptions.
* gnu/packages/mail.scm (dkimproxy)[synopsis]: Do so.
[description]: Also.
2019-07-26 01:16:39 +02:00
Tobias Geerinckx-Rice 858be79474
gnu: perl-net-dns-resolver-mock: Edit synopsis & description.
* gnu/packages/networking.scm (perl-net-dns-resolver-mock)[synopsis]:
Remove unfortunate ‘a’.
[description]: Fix typo.  Edit for clarity.
2019-07-25 22:42:40 +02:00
Tobias Geerinckx-Rice ce3a71c619
gnu: perl-net-dns-resolver-mock: Unpropagate perl-net-dns.
* gnu/packages/networking.scm (perl-net-dns-resolver-mock)[inputs]:
Move perl-net-dns to here…
[propagated-inputs]: …from here.
2019-07-25 22:42:40 +02:00
Tobias Geerinckx-Rice 2b456dd836
gnu: dkimproxy: Correct licence.
* gnu/packages/mail.scm (dkimproxy)[license]: Change to gpl2+.
2019-07-25 22:42:39 +02:00
Tobias Geerinckx-Rice 66e39000c6
gnu: dkimproxy: Add IPv6 support.
* gnu/packages/mail.scm (dkimproxy)[source]: Add patch.
* gnu/packages/patches/dkimproxy-add-ipv6-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-07-25 22:42:39 +02:00
Tobias Geerinckx-Rice 41097b2dee
gnu: libvirt: Don't use bogus cgroup.
Should fix <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36634>.

* gnu/packages/virtualization.scm (libvirt)[source]: Add patch.
* gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-07-25 21:59:07 +02:00
Tobias Geerinckx-Rice 12ea257122
gnu: clusterssh: Don't propagate xterm.
* gnu/packages/admin.scm (clusterssh)[arguments]: Add ‘refer-to-inputs’ and ‘delete-failing-tests’ phases.
[inputs]: Move xterm to here…
[propagated-inputs]: …from here.
2019-07-25 21:59:07 +02:00
Tobias Geerinckx-Rice b07aea69dd
gnu: clustershh: Add missing perl-sort-naturally input.
* gnu/packages/admin.scm (clusterssh)[propagated-inputs]:
Add perl-sort-naturally.
2019-07-25 21:59:06 +02:00
Julien Lepiller 8582202c5b
gnu: Add dkimproxy.
* gnu/packages/mail.scm (dkimproxy): New variable.
2019-07-25 21:27:27 +02:00
Julien Lepiller 930c52ae66
gnu: Add perl-mail-dkim.
* gnu/packages/mail.scm (perl-mail-dkim): New variable.
2019-07-25 21:27:25 +02:00
Julien Lepiller ac629e625c
gnu: Add perl-net-dns-resolver-mock.
* gnu/packages/networking.scm (perl-net-dns-resolver-mock): New
variable.
2019-07-25 21:27:22 +02:00
Julien Lepiller f115d81748
gnu: Add perl-mail-authenticationresults.
* gnu/packages/mail.scm (perl-mail-authenticationresults): New variable.
2019-07-25 21:26:58 +02:00
Leo Famulari 1074b37073
gnu: Go 1.12: Update to 1.12.7.
*  gnu/packages/golang.scm (go-1.12): Update to 1.12.7.
2019-07-25 13:07:49 -04:00
Leo Famulari ec8c1681e8
gnu: Go 1.11: Update to 1.11.12.
* gnu/packages/golang.scm (go-1.11): Update to 1.11.12.
2019-07-25 13:07:42 -04:00
Tobias Geerinckx-Rice 108edc964b
gnu: exim: Update to 4.92.1 [fixes CVE-2019-13917].
* gnu/packages/mail.scm (exim): Update to 4.92.1.
2019-07-25 17:35:29 +02:00
Rutger Helling 15027b89a8
gnu: xpra: Update to 2.5.3.
* gnu/packages/xorg.scm (xpra): Update to 2.5.3.
2019-07-25 14:24:07 +02:00
Jovany Leandro G.C 7c0411879b
gnu: Add xchm.
* gnu/packages/ebook.scm (xchm): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-25 09:23:17 +02:00
Kei Kebreau 8172ab2dde
gnu: starfighter: Update to 2.0.0.3.
* gnu/packages/games.scm (starfighter): Update to 2.0.0.3.
[source]: Use url-fetch and remove 'file-name' field.
[native-inputs]: Remove autoconf and automake.
2019-07-24 21:48:07 -04:00
Ludovic Courtès 91f55717ab
gnu: Explicitly refer to 'guile-json-1' when needed.
* gnu/packages/bioinformatics.scm (rcas-web)[inputs]: Change
'guile-json' to 'guile-json-1'.
* gnu/packages/ci.scm (cuirass)[inputs]: Likewise.
* gnu/packages/guile-xyz.scm (artanis)[inputs]: Likewise.
* gnu/packages/guile-xyz.scm (jupyter-guile-kernel)[inputs]: Likewise.
* gnu/packages/guile-xyz.scm (guile-mastodon)[inputs]: Likewise.
* gnu/packages/mail.scm (mumi)[inputs]: Likewise.
* gnu/packages/package-management.scm (guix)[inputs]: Likewise.
* gnu/packages/package-management.scm (guix-daemon)[inputs]: Likewise.
* gnu/packages/web.scm (hpcguix-web)[inputs]: Likewise.
2019-07-25 00:18:45 +02:00
Ludovic Courtès 584a3ca3a4
gnu: guile-json: Define 'guile-json-1'.
* gnu/packages/guile.scm (guile-json-1): New variable.
2019-07-25 00:18:45 +02:00
Ludovic Courtès 81c3dc3224
maint: Switch to Guile-JSON 3.x.
Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on
until now: it maps JSON dictionaries to alists (instead of hash tables),
and JSON arrays to vectors (instead of lists).  This commit is about
adjusting all the existing code to this new mapping.

* m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro.
* configure.ac: Use it.
* doc/guix.texi (Requirements): Mention the Guile-JSON version.
* guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3.
* guix/import/cpan.scm (string->license): Expect vectors instead of
lists.
(module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'.
(cpan-fetch): Likewise.
* guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list'
for DEPS.
* guix/import/gem.scm (rubygems-fetch): Likewise.
* guix/import/json.scm (json-fetch-alist): Remove.
* guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of
'json-fetch-alist'.
(latest-source-release, latest-wheel-release): Call 'vector->list' on
RELEASES.
* guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch'
instead of 'json-fetch-alist'.
(lts-package-version): Use 'vector->list'.
* guix/import/utils.scm (hash-table->alist): Remove.
(alist->package): Pass 'vector->list' on the inputs fields, and default
to the empty vector.
* guix/scripts/import/json.scm (guix-import-json): Remove call to
'hash-table->alist'.
* guix/swh.scm (define-json-reader): Expect pair? or null? instead of
hash-table?.
[extract-field]: Use 'assoc-ref' instead of 'hash-ref'.
(json->branches): Use 'map' instead of 'hash-map->list'.
(json->checksums): Likewise.
(json->directory-entries, origin-visits): Call 'vector->list' on the
result of 'json->scm'.
* tests/import-utils.scm ("alist->package with dependencies"): New test.
* gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3.
* gnu/installer.scm (installer-program)[installer-builder]: Likewise.
* gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref'
instead of 'hash-ref', and pass vectors through 'vector->list'.
(iso3166->iso3166-territories): Likewise.
* gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3.
* guix/docker.scm (manifest, config): Adjust for Guile-JSON 3.
* guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3.
* guix/import/github.scm (fetch-releases-or-tags): Update docstring.
(latest-released-version): Use 'assoc-ref' instead of 'hash-ref'.  Pass
the result of 'fetch-releases-or-tags' to 'vector->list'.
* guix/import/launchpad.scm (latest-released-version): Likewise.
2019-07-25 00:16:41 +02:00
zimoun a0efa069a1
gnu: Add r-depecher.
* gnu/packages/bioconductor.scm (r-depecher): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun 1adb9cbc5e
gnu: Add r-mixomics.
* gnu/packages/bioconductor.scm (r-mixomics): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun 1502751b32
gnu: Add r-flowsom.
* gnu/packages/bioconductor.scm (r-flowsom): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun e0cb053edb
gnu: Add r-flowmeans.
* gnu/packages/bioconductor.scm (r-flowmeans): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun ed6f49fc41
gnu: Add r-consensusclusterplus.
* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun a0422d18f1
gnu: Add r-flowutils.
* gnu/packages/bioconductor.scm (r-flowutils): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun a6fedf1f37
gnu: Add r-flowcore.
* gnu/packages/bioconductor.scm (r-flowcore): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun ad8f46c69e
gnu: Add r-all.
* gnu/packages/bioconductor.scm (r-all): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:39 +02:00
zimoun 6deb08a359
gnu: Add r-kableextra.
* gnu/packages/cran.scm (r-kableextra): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:38 +02:00
zimoun 1c0b2e7483
gnu: Add r-umap.
* gnu/packages/cran.scm (r-umap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24 23:05:38 +02:00
Jelle Licht 97bc8c47bb
gnu: emacs-gitpatch: Update to 0.5.1.
* gnu/packages/emacs-xyz.scm (emacs-gitpatch): Update to 0.5.1.
2019-07-24 22:23:19 +02:00
Tobias Geerinckx-Rice 8126142baf
gnu: terminator: Propagate gsettings-desktop-schemas.
* gnu/packages/gnome.scm (terminator)[propagated-inputs]: Add gsettings-desktop-schemas.
2019-07-24 21:29:10 +02:00
Tobias Geerinckx-Rice 4f20e0a2f6
gnu: spice-gtk: Update to 0.37.
* gnu/packages/spice.scm (spice-gtk): Update to 0.37.
[propagated-inputs]: Use latest spice-protocol.
(spice-protocol-0.12): Remove unused variable.
2019-07-24 21:29:10 +02:00